Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 1.7e-93 346.3 208 100.0
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 1.0e-90 337.0 208 94.2
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 2.5e-89 332.4 208 88.5
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 4.1e-76 288.5 192 88.0
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 1.6e-75 286.6 196 79.6
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 3.8e-74 282.0 196 77.6
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 5.0e-74 281.6 203 79.3
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 5.0e-74 281.6 201 85.6
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.1e-73 280.4 203 76.8
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 1.9e-73 279.6 206 75.2
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 1.9e-73 279.6 203 67.5
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 1.9e-73 279.6 196 81.1
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 4.2e-73 278.5 203 67.5
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 2.7e-72 275.8 210 79.0
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 4.7e-72 275.0 198 69.7
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 8.0e-72 274.2 195 73.8
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 8.8e-71 270.8 203 75.4
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 1.2e-70 270.4 192 77.6
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 1.2e-70 270.4 199 69.3
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 2.0e-70 269.6 192 86.5
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 2.6e-70 269.2 205 79.0
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 2.6e-70 269.2 207 66.2
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 3.4e-70 268.9 184 88.6
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 4.4e-70 268.5 193 85.5
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 4.4e-70 268.5 195 83.6
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 5.7e-70 268.1 205 75.1
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 5.7e-70 268.1 205 70.2
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 5.7e-70 268.1 195 84.1
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 5.7e-70 268.1 201 68.7
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 7.5e-70 267.7 192 84.9
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 1.3e-69 266.9 196 66.8
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 1.3e-69 266.9 203 70.9
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 1.3e-69 266.9 195 71.3
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 1.3e-69 266.9 186 80.6
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 1.7e-69 266.5 201 67.7
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 2.2e-69 266.2 196 66.3
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 2.2e-69 266.2 205 66.3
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 2.8e-69 265.8 207 65.7
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 1.1e-68 263.8 206 75.7
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 1.4e-68 263.5 206 68.4
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.4e-68 263.5 197 73.1
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 1.8e-68 263.1 207 79.2
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 1.8e-68 263.1 201 66.7
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 2.4e-68 262.7 204 74.0
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 5.4e-68 261.5 202 64.4
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 7.0e-68 261.2 190 82.6
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 7.0e-68 261.2 191 66.5
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 1.2e-67 260.4 192 65.6
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 1.6e-67 260.0 194 74.2
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 2.0e-67 259.6 203 66.5
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 2.0e-67 259.6 186 83.9
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 4.5e-67 258.5 203 64.0
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 5.9e-67 258.1 194 75.8
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 5.9e-67 258.1 204 66.2
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 5.9e-67 258.1 215 60.9
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 5.9e-67 258.1 206 68.0
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 5.9e-67 258.1 194 75.3
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 7.7e-67 257.7 191 67.5
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 7.7e-67 257.7 188 77.7
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 2.3e-66 256.1 176 81.8
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 2.9e-66 255.8 192 67.2
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 2.9e-66 255.8 203 63.5
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 5.0e-66 255.0 192 69.3
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.0e-66 255.0 192 65.6
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 1.1e-65 253.8 208 74.5
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 1.9e-65 253.1 200 63.0
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 1.9e-65 253.1 194 64.9
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.5e-65 252.7 183 67.8
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 3.3e-65 252.3 204 70.1
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.2e-65 251.9 194 64.9
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 4.2e-65 251.9 190 68.4
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 5.5e-65 251.5 195 81.0
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 1.2e-64 250.4 203 67.5
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 1.6e-64 250.0 197 73.6
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 2.1e-64 249.6 197 72.1
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 2.1e-64 249.6 205 71.7
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 2.1e-64 249.6 197 72.1
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 2.8e-64 249.2 196 72.4
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 2.8e-64 249.2 193 66.3
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 6.1e-64 248.1 203 70.0
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 8.0e-64 247.7 204 70.1
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 8.0e-64 247.7 196 76.0
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 1.0e-63 247.3 203 80.3
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 2.3e-63 246.1 195 76.4
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 4.0e-63 245.4 203 80.8
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 6.8e-63 244.6 196 64.8
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 8.9e-63 244.2 196 75.5
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 1.2e-62 243.8 192 64.6
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 1.5e-62 243.4 196 64.3
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 2.0e-62 243.0 187 78.6
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 2.6e-62 242.7 206 72.3
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 3.4e-62 242.3 191 69.6
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 5.7e-62 241.5 203 72.9
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 1.3e-61 240.4 187 74.9
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.7e-61 240.0 195 70.8
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 1.7e-61 240.0 201 72.1
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 1.0e-58 230.7 123 85.4
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.0e-58 230.7 123 85.4
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 5.0e-58 228.4 191 73.8
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.1e-57 227.3 123 84.6
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 1.9e-57 226.5 133 79.7
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 1.9e-57 226.5 195 60.0
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 9.5e-57 224.2 126 81.7
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 3.6e-56 222.2 200 72.5
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 8.0e-56 221.1 194 65.5
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.2e-55 218.4 122 82.0
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 1.2e-54 217.2 114 84.2
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 2.6e-54 216.1 195 77.4
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 2.4e-52 209.5 203 59.1
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 2.7e-51 206.1 112 83.9
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 4.6e-51 205.3 129 73.6
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 3.0e-50 202.6 159 84.9
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 1.9e-49 199.9 152 70.4
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 3.3e-49 199.1 191 64.9
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 1.2e-48 197.2 116 77.6
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 6.2e-48 194.9 108 84.3
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 8.9e-47 191.0 100 85.0
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.3e-45 187.2 91 93.4
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 6.4e-45 184.9 155 60.0
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 1.3e-34 150.6 82 82.9
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 6.8e-31 138.3 206 51.5
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 2.9e-29 132.9 101 56.4
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 3.2e-28 129.4 121 74.4
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 2.5e-25 119.8 59 89.8
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 5.6e-25 118.6 121 53.7
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 5.3e-23 112.1 93 53.8
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.9e-21 106.3 195 47.7
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 1.6e-19 100.5 97 47.4
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 5.6e-17 92.0 83 55.4
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 1.1e-12 77.8 100 40.0
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 2.7e-11 73.2 41 80.5
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 3.5e-11 72.8 82 86.6
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 1.0e-10 71.2 82 47.6
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.0e-10 69.7 45 68.9
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.8e-08 63.2 96 43.8
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 1.4e-07 60.8 83 44.6
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 5.3e-07 58.9 34 73.5


User provided reference genes

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