Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G016910 Citrullus lanatus HOM05D002866 ORTHO05D008929 5.8e-155 550.8 271 100.0
CsaV3_4G004140 Cucumis sativus L. HOM05D002866 ORTHO05D008929 6.2e-125 451.1 270 84.4
Sed0016729 Sechium edule HOM05D002866 ORTHO05D008929 2.0e-123 446.0 270 82.2
QL05p020902 Quercus lobata HOM05D002866 ORTHO05D008929 1.0e-95 354.0 254 70.5
FvH4_7g27050 Fragaria vesca HOM05D002866 ORTHO05D008929 3.9e-95 352.1 254 68.9
QL05p021044 Quercus lobata HOM05D002866 ORTHO05D008929 1.5e-94 350.1 254 70.1
FAN10G2637 Fragaria x ananassa HOM05D002866 ORTHO05D008929 1.9e-94 349.7 254 68.5
GSVIVG01013991001 Vitis vinifera HOM05D002866 ORTHO05D008929 1.9e-94 349.7 258 65.9
Haze_22179 Corylus avellana HOM05D002866 ORTHO05D000055 2.5e-94 349.4 257 67.7
FAN03G0702 Fragaria x ananassa HOM05D002866 ORTHO05D008929 4.3e-94 348.6 254 68.1
Prupe.2G273700 Prunus persica HOM05D002866 ORTHO05D008929 5.7e-94 348.2 254 67.7
RcHm_v2.0_Chr1g0373871 Rosa chinensis HOM05D002866 ORTHO05D008929 9.7e-94 347.4 254 68.1
Atru.chr1.858_Atru.chr1.859 Acer truncatum HOM05D002866 ORTHO05D008929 8.2e-93 344.4 240 69.2
FAN06G4646 Fragaria x ananassa HOM05D002866 ORTHO05D008929 8.2e-93 344.4 238 70.2
Lalb_Chr15g0079681 Lupinus albus HOM05D002866 ORTHO05D008929 1.1e-92 344.0 235 71.5
Cfa013559 Carpinus fangiana HOM05D002866 ORTHO05D008929 1.8e-92 343.2 254 67.3
MD07G1250300 Malus domestica HOM05D002866 ORTHO05D008929 2.4e-92 342.8 264 65.5
Manes.06G132400 Manihot esculenta HOM05D002866 ORTHO05D008929 1.2e-91 340.5 240 69.2
CiPaw.07G051200 Carya illinoinensis HOM05D002866 ORTHO05D008929 4.5e-91 338.6 263 63.5
Dinv06581 Davidia involucrata HOM05D002866 ORTHO05D008706 5.9e-91 338.2 240 69.2
Eucgr.A02913 Eucalyptus grandis HOM05D002866 ORTHO05D008929 5.9e-91 338.2 251 68.1
Potri.014G191900 Populus trichocarpa HOM05D002866 ORTHO05D008929 1.0e-90 337.4 264 63.3
CSS0005256 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008929 1.3e-90 337.0 264 62.9
CSS0048324 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008929 1.3e-90 337.0 264 62.9
Duzib084G0424 Durio zibethinus HOM05D002866 ORTHO05D008929 1.3e-90 337.0 240 66.7
Lj1A976T81 Lonicera japonica HOM05D002866 ORTHO05D008929 1.3e-90 337.0 254 66.1
Nn6g33860 Nelumbo nucifera HOM05D002866 ORTHO05D008929 1.3e-90 337.0 256 65.6
PGR042G0411 Punica granatum HOM05D002866 ORTHO05D008929 1.7e-90 336.7 254 66.5
Thecc.03G150200 Theobroma cacao HOM05D002866 ORTHO05D008929 2.2e-90 336.3 254 63.8
Cpa.g.sc13.272 Carica papaya HOM05D002866 ORTHO05D008929 3.8e-90 335.5 263 65.0
arahy.Tifrunner.gnm1.ann1.DW86GH Arachis hypogaea HOM05D002866 ORTHO05D008929 1.4e-89 333.6 265 63.8
Ciclev10005302m.g Citrus clementina HOM05D002866 ORTHO05D008929 3.2e-89 332.4 254 63.4
Gorai.008G214900 Gossypium raimondii HOM05D002866 ORTHO05D008929 3.2e-89 332.4 258 64.7
Oeu021694.1 Olea europaea HOM05D002866 ORTHO05D008929 4.2e-89 332.0 265 63.8
SalBow2G0523 Salvia bowleyana HOM05D002866 ORTHO05D008929 5.5e-89 331.6 265 62.6
Psat5g228760 Pisum sativum HOM05D002866 ORTHO05D008929 7.2e-89 331.3 263 64.6
Aqoxy3G02801 Aquilegia oxysepala HOM05D002866 ORTHO05D008929 9.4e-89 330.9 241 68.9
Actinidia24979 Actinidia chinensis HOM05D002866 ORTHO05D008929 1.2e-88 330.5 238 66.8
TAR629G2248 Trochodendron aralioides HOM05D002866 ORTHO05D008929 1.2e-88 330.5 257 64.2
TPR.G12157 Trifolium pratense HOM05D002866 ORTHO05D008929 1.6e-88 330.1 264 64.8
CANSAT56G0775 Cannabis sativa HOM05D002866 ORTHO05D008929 2.7e-88 329.3 252 67.1
Medtr3g008180 Medicago truncatula HOM05D002866 ORTHO05D008929 3.6e-88 328.9 252 66.7
Ca_14047_v3 Cicer arietinum L. HOM05D002866 ORTHO05D008929 4.7e-88 328.6 261 63.6
Gohir.A12G197100 Gossypium hirsutum HOM05D002866 ORTHO05D008929 4.7e-88 328.6 258 64.3
PGSC0003DMG400018851 Solanum tuberosum HOM05D002866 ORTHO05D008929 1.4e-87 327.0 236 67.8
Gohir.D12G199700 Gossypium hirsutum HOM05D002866 ORTHO05D008929 1.8e-87 326.6 258 63.6
Sabra14G0144000 Salix brachista HOM05D002866 ORTHO05D008929 1.8e-87 326.6 255 63.1
COL.COLO4_14062 Corchorus olitorius HOM05D002866 ORTHO05D008929 3.9e-87 325.5 266 60.9
Lj3g0001933 Lotus japonicus HOM05D002866 ORTHO05D008929 3.9e-87 325.5 252 67.1
Glyma.06G317300 Glycine max HOM05D002866 ORTHO05D008929 6.7e-87 324.7 254 65.7
Solyc03g093440.4 Solanum lycopersicum HOM05D002866 ORTHO05D008929 6.7e-87 324.7 235 67.7
Peaxi162Scf00271g00827 Petunia axillaris HOM05D002866 ORTHO05D008929 3.3e-86 322.4 240 66.7
EL10Ac3g05868 Beta vulgaris HOM05D002866 ORTHO05D008929 5.7e-86 321.6 263 58.9
MBI04_g34103_MAGBIO Magnolia biondii HOM05D002866 ORTHO05D008929 5.7e-86 321.6 263 63.1
Sp2g24740 Schrenkiella parvula HOM05D002866 ORTHO05D008929 5.7e-86 321.6 259 64.9
vmacro22348 Vaccinium macrocarpon HOM05D002866 ORTHO05D008929 1.7e-85 320.1 266 61.7
PSO063G6150 Papaver somniferum HOM05D002866 ORTHO05D008929 3.7e-85 318.9 260 63.1
Lsat_1_v5_gn_2_127761 Lactuca sativa HOM05D002866 ORTHO05D008929 4.8e-85 318.5 258 60.9
AUR62002233 Chenopodium quinoa HOM05D002866 ORTHO05D008929 8.2e-85 317.8 256 60.9
Nitab4.5_0001267g0010 Nicotiana tabacum HOM05D002866 ORTHO05D008929 8.2e-85 317.8 259 63.7
ECA238G1321 Erigeron canadensis HOM05D002866 ORTHO05D008929 1.1e-84 317.4 254 60.2
VMungo1080G1351 Vigna mungo HOM05D002866 ORTHO05D008929 1.1e-84 317.4 257 63.8
Actinidia13601 Actinidia chinensis HOM05D002866 ORTHO05D008929 1.8e-84 316.6 266 60.9
CAN.G485.17 Capsicum annuum HOM05D002866 ORTHO05D008929 2.4e-84 316.2 258 62.8
Rhsim03G0162900 Rhododendron simsii HOM05D002866 ORTHO05D008929 3.1e-84 315.8 259 60.2
THA.LOC104818311 Tarenaya hassleriana HOM05D002866 ORTHO05D008929 3.1e-84 315.8 253 64.0
AUR62015445 Chenopodium quinoa HOM05D002866 ORTHO05D008929 4.1e-84 315.5 256 60.2
Phvul.005G009200 Phaseolus vulgaris HOM05D002866 ORTHO05D008929 4.1e-84 315.5 265 62.3
Hund11850 Selenicereus undatus HOM05D002866 ORTHO05D008929 7.0e-84 314.7 268 60.1
HanXRQChr14g0461261 Helianthus annuus HOM05D002866 ORTHO05D008929 1.2e-83 313.9 254 60.6
Thhalv10004474m.g Eutrema salsugineum HOM05D002866 ORTHO05D008929 2.6e-83 312.8 255 63.5
Migut.F01192 Erythranthe guttata HOM05D002866 ORTHO05D008929 3.4e-83 312.4 234 66.2
Hund11848 Selenicereus undatus HOM05D002866 ORTHO05D008929 5.9e-83 311.6 268 59.7
Cc02_g04590 Coffea canephora HOM05D002866 ORTHO05D008929 1.3e-82 310.5 241 65.6
AL8G38240 Arabidopsis lyrata HOM05D002866 ORTHO05D008929 2.9e-82 309.3 260 61.5
AT5G61540 Arabidopsis thaliana HOM05D002866 ORTHO05D008929 2.9e-82 309.3 260 61.2
Carub.0008s2223 Capsella rubella HOM05D002866 ORTHO05D008929 2.9e-82 309.3 255 62.0
HPP92_027439 Vanilla planifolia HOM05D002866 ORTHO05D008929 3.8e-82 308.9 256 60.9
Aa31LG11G1880 Aethionema arabicum HOM05D002866 ORTHO05D008929 2.5e-81 306.2 256 62.1
TWI14G1303 Tripterygium wilfordii HOM05D002866 ORTHO05D008929 4.2e-81 305.4 261 60.9
HPP92_021029 Vanilla planifolia HOM05D002866 ORTHO05D008929 5.5e-81 305.1 256 60.2
ATR0767G136 Amborella trichopoda HOM05D002866 ORTHO05D008929 1.6e-80 303.5 270 59.3
A03p47120 Brassica napus HOM05D002866 ORTHO05D008929 4.7e-80 302.0 256 61.7
BraA03t13840Z Brassica rapa HOM05D002866 ORTHO05D008929 4.7e-80 302.0 256 61.7
Ah.07g207570 Amaranthus hybridus HOM05D002866 ORTHO05D008929 6.1e-80 301.6 235 62.1
Sc13g0007920 Simmondsia chinensis HOM05D002866 ORTHO05D008929 3.9e-79 298.9 253 60.5
BolC7t45046H Brassica oleracea HOM05D002866 ORTHO05D008929 1.7e-77 293.5 256 60.2
C07p45230 Brassica napus HOM05D002866 ORTHO05D008929 2.2e-77 293.1 258 60.1
Zm00001eb074820 Zea mays HOM05D002866 ORTHO05D008929 5.3e-76 288.5 239 62.3
Os04g0549300 Oryza sativa ssp. japonica HOM05D002866 ORTHO05D008929 1.6e-75 287.0 258 58.5
unitig_60.g25662 Utricularia gibba HOM05D002866 ORTHO05D008929 1.3e-74 283.9 235 60.9
ATR0057G117 Amborella trichopoda HOM05D002866 ORTHO05D008929 8.5e-74 281.2 237 61.6
Nitab4.5_0002346g0020 Nicotiana tabacum HOM05D002866 ORTHO05D008929 8.5e-66 254.6 173 71.7
Mapoly0043s0091 Marchantia polymorpha HOM05D002866 ORTHO05D008929 1.0e-63 247.7 244 52.0
AagrBONN_evm.TU.Sc2ySwM_228.4013 Anthoceros agrestis HOM05D002866 ORTHO05D008929 8.8e-63 244.6 236 54.2
SMO115G0123 Selaginella moellendorffii HOM05D002866 ORTHO05D008929 9.8e-62 241.1 239 53.6
SEGI_24637 Sequoiadendron giganteum HOM05D002866 ORTHO05D008929 5.4e-60 235.3 182 62.6
SEGI_35611 Sequoiadendron giganteum HOM05D002866 ORTHO05D008929 5.4e-60 235.3 182 62.6
MELO3C017653.2 Cucumis melo HOM05D002866 ORTHO05D008929 1.0e-58 231.1 128 85.2
Aqoxy6G00570 Aquilegia oxysepala HOM05D002866 ORTHO05D008929 1.2e-56 224.2 154 70.8
CBR_g51802 Chara braunii HOM05D002866 ORTHO05D000301 4.1e-52 209.1 285 44.2
Sopen03g024270 Solanum pennellii HOM05D002866 ORTHO05D008929 1.6e-51 207.2 156 66.0
Pp3c27_3290 Physcomitrium patens HOM05D002866 ORTHO05D008929 5.9e-51 205.3 221 49.3
CARHR275310 Cardamine hirsuta HOM05D002866 ORTHO05D008929 2.3e-50 203.4 151 66.2
SGA_v2.0_scaffold56G19920 Striga asiatica HOM05D002866 ORTHO05D008929 2.3e-50 203.4 157 63.7
CDE11G0041 Ceratophyllum demersum HOM05D002866 ORTHO05D008929 1.1e-49 201.1 149 65.8
PRCOL_00000617 Prasinoderma coloniale HOM05D002866 ORTHO05D008929 3.0e-42 176.4 235 43.0
Haze_26420 Corylus avellana HOM05D002866 ORTHO05D008929 3.9e-42 176.0 235 42.6
Glyma.14G148200 Glycine max HOM05D002866 ORTHO05D008929 2.3e-34 150.2 100 71.0
RcHm_v2.0_Chr1g0373731 Rosa chinensis HOM05D002866 ORTHO05D015989 8.9e-23 111.7 116 53.4
MD08G1232700 Malus domestica HOM05D002866 ORTHO05D008929 2.5e-17 93.6 103 46.6
arahy.Tifrunner.gnm1.ann1.AMR3HT Arachis hypogaea HOM05D002866 ORTHO05D015989 2.9e-13 80.1 63 63.5
arahy.Tifrunner.gnm1.ann1.BZV88W Arachis hypogaea HOM05D002866 ORTHO05D015989 2.9e-13 80.1 63 63.5
Hund11849 Selenicereus undatus HOM05D025212 ORTHO05D015989 2.9e-13 80.1 55 67.3
Hund09953 Selenicereus undatus HOM05D002101 ORTHO05D002126 1.6e-08 64.3 205 27.3
Solyc03g114790.3 Solanum lycopersicum HOM05D002101 ORTHO05D002126 2.1e-08 63.9 213 29.6
EL10Ac1g00526 Beta vulgaris HOM05D004612 ORTHO05D004940 3.6e-08 63.2 216 25.9
Nitab4.5_0013901g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 4.8e-08 62.8 175 29.7
Sopen03g033870 Solanum pennellii HOM05D002101 ORTHO05D002126 4.8e-08 62.8 213 29.6
BolC1t04781H Brassica oleracea HOM05D002101 ORTHO05D002126 1.1e-07 61.6 200 27.5
A01p37950 Brassica napus HOM05D002101 ORTHO05D002126 1.4e-07 61.2 200 27.5
C01p48170 Brassica napus HOM05D002101 ORTHO05D002126 1.4e-07 61.2 200 27.5
BraA01t03855Z Brassica rapa HOM05D002101 ORTHO05D002126 1.4e-07 61.2 200 27.5
Nitab4.5_0002467g0120 Nicotiana tabacum HOM05D002101 ORTHO05D002126 1.4e-07 61.2 175 28.6
THA.LOC104825759 Tarenaya hassleriana HOM05D002101 ORTHO05D002126 1.4e-07 61.2 231 26.4
PGSC0003DMG400024526 Solanum tuberosum HOM05D002101 ORTHO05D002126 1.8e-07 60.8 175 31.4
CAN.G1592.8 Capsicum annuum HOM05D002101 ORTHO05D002126 2.4e-07 60.5 174 29.9
Phvul.003G182400 Phaseolus vulgaris HOM05D002101 ORTHO05D002126 2.4e-07 60.5 181 27.6
BcaB06g25708 Brassica carinata HOM05D002101 ORTHO05D002126 3.1e-07 60.1 198 27.8
Gohir.A05G206000 Gossypium hirsutum HOM05D002101 ORTHO05D002126 3.1e-07 60.1 199 26.6
Gohir.D05G209300 Gossypium hirsutum HOM05D002101 ORTHO05D002126 3.1e-07 60.1 199 26.6
Gorai.009G215700 Gossypium raimondii HOM05D002101 ORTHO05D002126 3.1e-07 60.1 199 26.6
AT3G16150 Arabidopsis thaliana HOM05D002101 ORTHO05D002126 5.3e-07 59.3 200 27.0
Gohir.A06G021400 Gossypium hirsutum HOM05D002101 ORTHO05D002126 6.9e-07 58.9 200 27.0
Gohir.D06G019081 Gossypium hirsutum HOM05D002101 ORTHO05D002126 6.9e-07 58.9 200 27.0
Gorai.010G023000 Gossypium raimondii HOM05D002101 ORTHO05D002126 6.9e-07 58.9 200 27.0
Thhalv10021131m.g Eutrema salsugineum HOM05D002101 ORTHO05D002126 9.0e-07 58.5 202 26.7
Glyma.05G018300 Glycine max HOM05D002101 ORTHO05D002126 9.0e-07 58.5 181 27.1
Sp3g14510 Schrenkiella parvula HOM05D002101 ORTHO05D002126 1.2e-06 58.2 199 27.1
Aa31LG8G3280 Aethionema arabicum HOM05D002101 ORTHO05D002126 1.5e-06 57.8 201 25.9
Psat4g046120 Pisum sativum HOM05D002101 ORTHO05D002126 2.0e-06 57.4 181 26.5
TPR.G2026 Trifolium pratense HOM05D002101 ORTHO05D002126 2.0e-06 57.4 181 26.0
ATR0827G117 Amborella trichopoda HOM05D002101 ORTHO05D002126 2.6e-06 57.0 175 28.6
Lj4g0024769 Lotus japonicus HOM05D002101 ORTHO05D002126 3.4e-06 56.6 181 26.5
Peaxi162Scf00017g03274 Petunia axillaris HOM05D002101 ORTHO05D002126 3.4e-06 56.6 211 27.5
C05p50340 Brassica napus HOM05D002101 ORTHO05D002126 4.5e-06 56.2 200 26.0
BolC5t33783H Brassica oleracea HOM05D002101 ORTHO05D002126 4.5e-06 56.2 200 26.0
arahy.Tifrunner.gnm1.ann1.I7FZVG Arachis hypogaea HOM05D002101 ORTHO05D002126 7.6e-06 55.5 243 24.3
A05p33340 Brassica napus HOM05D002101 ORTHO05D002126 7.6e-06 55.5 200 26.0
BraA05t22160Z Brassica rapa HOM05D002101 ORTHO05D002126 7.6e-06 55.5 200 26.0
Cpa.g.sc21.150 Carica papaya HOM05D002101 ORTHO05D002126 7.6e-06 55.5 227 25.1
Cpa.g.sc3.238 Carica papaya HOM05D002101 ORTHO05D002126 7.6e-06 55.5 174 27.6
CANSAT80G0948 Cannabis sativa HOM05D002101 ORTHO05D002126 9.9e-06 55.1 166 28.3
Pp3c14_14930 Physcomitrium patens HOM05D002101 ORTHO05D002126 9.9e-06 55.1 217 26.7
Hund05329 Selenicereus undatus HOM05D002101 ORTHO05D002126 9.9e-06 55.1 203 25.1
SGA_v2.0_scaffold42G16057 Striga asiatica HOM05D002101 ORTHO05D002126 9.9e-06 55.1 211 27.0


User provided reference genes

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