Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G016890 Citrullus lanatus HOM05D002866 ORTHO05D008706 1.1e-221 773.1 399 100.0
CsaV3_4G004120 Cucumis sativus L. HOM05D002866 ORTHO05D008706 1.7e-200 702.6 399 91.5
MELO3C017654.2 Cucumis melo HOM05D002866 ORTHO05D008706 3.0e-200 701.8 399 91.7
Sed0026429 Sechium edule HOM05D002866 ORTHO05D008706 2.1e-190 669.1 399 87.2
QL09p028565 Quercus lobata HOM05D002866 ORTHO05D008706 1.0e-163 580.5 398 76.1
CiPaw.07G185900 Carya illinoinensis HOM05D002866 ORTHO05D008706 2.5e-162 575.9 400 76.8
Potri.004G233400 Populus trichocarpa HOM05D002866 ORTHO05D008706 2.3e-160 569.3 399 72.9
Gohir.A12G197200 Gossypium hirsutum HOM05D002866 ORTHO05D008706 1.3e-158 563.5 399 72.9
Gohir.D12G199800 Gossypium hirsutum HOM05D002866 ORTHO05D008706 4.8e-158 561.6 399 72.7
Cfa013555 Carpinus fangiana HOM05D002866 ORTHO05D008706 8.2e-158 560.8 399 73.4
COL.COLO4_14065 Corchorus olitorius HOM05D002866 ORTHO05D008706 3.1e-157 558.9 399 72.7
Atru.chr1.857 Acer truncatum HOM05D002866 ORTHO05D008706 4.5e-156 555.1 399 72.9
TWI39G0340 Tripterygium wilfordii HOM05D002866 ORTHO05D008706 7.7e-156 554.3 399 70.9
Duzib205G1859 Durio zibethinus HOM05D002866 ORTHO05D008706 1.3e-155 553.5 399 71.9
RcHm_v2.0_Chr1g0373901 Rosa chinensis HOM05D002866 ORTHO05D008706 2.9e-155 552.4 399 71.4
Thecc.03G150500 Theobroma cacao HOM05D002866 ORTHO05D008706 2.9e-155 552.4 397 72.3
Rhsim03G0163000 Rhododendron simsii HOM05D002866 ORTHO05D008706 6.5e-155 551.2 433 68.8
Dinv16857 Davidia involucrata HOM05D002866 ORTHO05D000096 1.9e-154 549.7 399 71.9
Haze_22176 Corylus avellana HOM05D002866 ORTHO05D008706 5.5e-154 548.1 399 72.4
CSS0049284 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 7.2e-154 547.7 400 72.0
CSS0019630 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 9.4e-154 547.4 401 71.8
Gorai.008G215000 Gossypium raimondii HOM05D002866 ORTHO05D008706 1.6e-153 546.6 427 67.9
CANSAT56G0863 Cannabis sativa HOM05D002866 ORTHO05D008706 2.1e-153 546.2 399 71.4
TAR629G0107 Trochodendron aralioides HOM05D002866 ORTHO05D008706 6.1e-153 544.7 403 70.7
Ciclev10005197m.g Citrus clementina HOM05D002866 ORTHO05D008706 1.0e-152 543.9 399 71.4
MD07G1250400 Malus domestica HOM05D002866 ORTHO05D008706 1.0e-152 543.9 399 71.9
Sabra01G0178500 Salix brachista HOM05D002866 ORTHO05D008706 1.0e-152 543.9 435 67.8
Eucgr.K00134 Eucalyptus grandis HOM05D002866 ORTHO05D008706 1.8e-152 543.1 399 69.9
Glyma.09G001400 Glycine max HOM05D002866 ORTHO05D008706 2.3e-152 542.7 399 70.9
TAR636G1476 Trochodendron aralioides HOM05D002866 ORTHO05D008706 3.0e-152 542.3 403 70.7
VMungo1127G0600 Vigna mungo HOM05D002866 ORTHO05D008706 8.8e-152 540.8 399 70.4
MSTRG.135 Avicennia marina HOM05D002866 ORTHO05D008706 1.1e-151 540.4 399 69.9
HanXRQChr05g0139511 Helianthus annuus HOM05D002866 ORTHO05D008706 1.5e-151 540.0 399 69.7
Glyma.12G241300 Glycine max HOM05D002866 ORTHO05D008706 2.6e-151 539.3 399 70.7
arahy.Tifrunner.gnm1.ann1.J95VX3 Arachis hypogaea HOM05D002866 ORTHO05D008706 4.4e-151 538.5 422 66.4
arahy.Tifrunner.gnm1.ann1.E5894Z Arachis hypogaea HOM05D002866 ORTHO05D008706 7.4e-151 537.7 428 65.7
CiPaw.08G040800 Carya illinoinensis HOM05D002866 ORTHO05D008706 1.3e-150 537.0 410 71.5
Oeu021695.1 Olea europaea HOM05D002866 ORTHO05D008706 8.2e-150 534.3 399 69.7
vmacro22347 Vaccinium macrocarpon HOM05D002866 ORTHO05D008706 1.8e-149 533.1 397 70.5
FAN06G0893 Fragaria x ananassa HOM05D002866 ORTHO05D008706 3.1e-149 532.3 409 66.7
Lj3g0011743 Lotus japonicus HOM05D002866 ORTHO05D008706 3.1e-149 532.3 399 70.2
Lj1A977T67 Lonicera japonica HOM05D002866 ORTHO05D008706 7.0e-149 531.2 433 66.5
MD01G1178200 Malus domestica HOM05D002866 ORTHO05D008706 1.2e-148 530.4 390 71.0
PGR142G0955 Punica granatum HOM05D002866 ORTHO05D008706 2.0e-148 529.6 399 68.7
Manes.06G132500 Manihot esculenta HOM05D002866 ORTHO05D008706 4.5e-148 528.5 405 68.6
THA.LOC104819416 Tarenaya hassleriana HOM05D002866 ORTHO05D008706 4.5e-148 528.5 399 68.2
FvH4_7g27080 Fragaria vesca HOM05D002866 ORTHO05D008706 1.0e-147 527.3 399 67.9
Lalb_Chr01g0008171 Lupinus albus HOM05D002866 ORTHO05D008706 1.3e-147 526.9 399 68.9
Lsat_1_v5_gn_8_9940 Lactuca sativa HOM05D002866 ORTHO05D008706 2.2e-147 526.2 399 67.7
Cc02_g04580 Coffea canephora HOM05D002866 ORTHO05D008706 2.9e-147 525.8 397 68.3
Ca_19791_v3 Cicer arietinum L. HOM05D002866 ORTHO05D008706 5.0e-147 525.0 399 69.9
Medtr4g029530 Medicago truncatula HOM05D002866 ORTHO05D008706 5.0e-147 525.0 399 68.9
AL8G38230 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 6.5e-147 524.6 399 69.4
TPR.G4977 Trifolium pratense HOM05D002866 ORTHO05D008706 8.5e-147 524.2 399 69.2
Thhalv10005440m.g Eutrema salsugineum HOM05D002866 ORTHO05D008706 1.1e-146 523.9 399 68.9
FAN10G3812 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.1e-146 523.9 399 67.7
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 7.2e-146 521.2 376 72.6
Psat7g229240 Pisum sativum HOM05D002866 ORTHO05D008706 7.2e-146 521.2 399 67.9
Nn6g33864 Nelumbo nucifera HOM05D002866 ORTHO05D008706 2.7e-145 519.2 403 67.7
Peaxi162Scf00271g00837 Petunia axillaris HOM05D002866 ORTHO05D008706 2.7e-145 519.2 399 66.7
BraA03t13839Z Brassica rapa HOM05D002866 ORTHO05D008706 4.7e-145 518.5 399 68.2
Nitab4.5_0002346g0030 Nicotiana tabacum HOM05D002866 ORTHO05D008706 4.7e-145 518.5 399 66.7
Sp2g24730 Schrenkiella parvula HOM05D002866 ORTHO05D008706 4.7e-145 518.5 399 68.2
Carub.0008s2222 Capsella rubella HOM05D002866 ORTHO05D008706 1.4e-144 516.9 399 67.9
Migut.F00510 Erythranthe guttata HOM05D002866 ORTHO05D008706 1.8e-144 516.5 397 67.8
A03p47120 Brassica napus HOM05D002866 ORTHO05D008929 2.3e-144 516.2 397 68.0
EL10Ac3g05867 Beta vulgaris HOM05D002866 ORTHO05D008706 3.0e-144 515.8 401 67.1
PGSC0003DMG400018852 Solanum tuberosum HOM05D002866 ORTHO05D008706 5.2e-144 515.0 399 66.4
Lalb_Chr03g0033851 Lupinus albus HOM05D002866 ORTHO05D008706 6.7e-144 514.6 399 67.2
Ah.07g207580 Amaranthus hybridus HOM05D002866 ORTHO05D008706 8.8e-144 514.2 401 66.3
CAN.G485.11 Capsicum annuum HOM05D002866 ORTHO05D008706 8.8e-144 514.2 400 66.5
Solyc03g093430.3 Solanum lycopersicum HOM05D002866 ORTHO05D008706 2.0e-143 513.1 399 66.4
C07p45230 Brassica napus HOM05D002866 ORTHO05D008929 3.3e-143 512.3 395 67.8
Dinv06581 Davidia involucrata HOM05D002866 ORTHO05D008706 7.4e-143 511.1 382 71.5
CARHR275300 Cardamine hirsuta HOM05D002866 ORTHO05D008706 9.7e-143 510.8 399 67.9
BcaNung01432 Brassica carinata HOM05D002866 ORTHO05D008706 1.1e-141 507.3 399 67.7
A09p07320 Brassica napus HOM05D002866 ORTHO05D008706 1.4e-141 506.9 400 68.2
Aqoxy3G02809 Aquilegia oxysepala HOM05D002866 ORTHO05D008706 1.8e-141 506.5 404 65.6
BraA09t36387Z Brassica rapa HOM05D002866 ORTHO05D008706 5.3e-141 505.0 400 68.0
BcaC04g23445 Brassica carinata HOM05D002866 ORTHO05D008706 1.6e-140 503.4 400 67.8
BolC7t45046H Brassica oleracea HOM05D002866 ORTHO05D008929 1.6e-140 503.4 400 66.8
C09p08260 Brassica napus HOM05D002866 ORTHO05D008706 2.6e-140 502.7 400 67.8
BolC9t53736H Brassica oleracea HOM05D002866 ORTHO05D008706 2.6e-140 502.7 400 67.8
Hund27168 Selenicereus undatus HOM05D002866 ORTHO05D008706 1.0e-139 500.7 479 57.0
SGA_v2.0_scaffold60G20804 Striga asiatica HOM05D006112 ORTHO05D000096 1.0e-139 500.7 424 63.4
FAN01G3021 Fragaria x ananassa HOM05D002866 ORTHO05D008706 5.0e-139 498.4 430 61.9
Nitab4.5_0001267g0040 Nicotiana tabacum HOM05D002866 ORTHO05D008706 1.5e-138 496.9 399 64.2
MBI04_g34101_MAGBIO Magnolia biondii HOM05D002866 ORTHO05D008706 1.2e-137 493.8 407 64.6
PSO063G2361 Papaver somniferum HOM05D002866 ORTHO05D008706 3.6e-137 492.3 399 64.9
Aa31LG11G1890 Aethionema arabicum HOM05D002866 ORTHO05D008706 1.8e-136 490.0 417 64.0
FAN06G0035 Fragaria x ananassa HOM05D002866 ORTHO05D008706 5.2e-136 488.4 399 63.9
unitig_0.g267 Utricularia gibba HOM05D002866 ORTHO05D008706 4.4e-135 485.3 400 64.8
Prupe.2G274000 Prunus persica HOM05D002866 ORTHO05D008706 3.5e-132 475.7 344 71.2
FAN03G0071 Fragaria x ananassa HOM05D002866 ORTHO05D008706 9.4e-130 467.6 399 62.9
Eucgr.A02912 Eucalyptus grandis HOM05D002866 ORTHO05D008706 1.3e-126 457.2 399 60.9
AUR62015444 Chenopodium quinoa HOM05D002866 ORTHO05D008706 2.3e-123 446.4 401 59.6
Sopen03g024260 Solanum pennellii HOM05D002866 ORTHO05D008706 3.8e-123 445.7 351 66.4
AUR62002232 Chenopodium quinoa HOM05D002866 ORTHO05D008706 5.0e-123 445.3 401 58.9
Os07g0486500 Oryza sativa ssp. japonica HOM05D002866 ORTHO05D008706 5.6e-122 441.8 404 59.9
CDE02G3129 Ceratophyllum demersum HOM05D002866 ORTHO05D008706 2.8e-121 439.5 404 59.7
Actinidia13600 Actinidia chinensis HOM05D000164 ORTHO05D000096 1.4e-120 437.2 278 82.7
AT5G61530 Arabidopsis thaliana HOM05D002866 ORTHO05D008706 5.0e-115 418.7 278 77.7
ATR0057G110 Amborella trichopoda HOM05D002866 ORTHO05D008706 1.4e-112 410.6 433 55.0
HPP92_007440 Vanilla planifolia HOM05D002866 ORTHO05D008706 9.8e-111 404.4 407 55.8
Zm00001eb321610 Zea mays HOM05D002866 ORTHO05D008706 1.2e-103 380.9 408 53.9
Zm00001eb105130 Zea mays HOM05D002866 ORTHO05D008706 1.1e-74 284.6 245 61.6
AagrBONN_evm.TU.Sc2ySwM_368.2292 Anthoceros agrestis HOM05D002866 ORTHO05D008706 1.3e-67 261.2 444 39.0
AL6G41360 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.8e-64 250.8 158 78.5
AL4G20970 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 4.5e-63 246.1 158 77.8
AL7G45270 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 3.8e-62 243.0 161 75.8
Mapoly0101s0019 Marchantia polymorpha HOM05D002866 ORTHO05D008706 1.9e-58 230.7 479 34.7
AL9U10640 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 8.7e-51 205.3 161 66.5
GSVIVG01032279001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.1e-48 198.4 148 69.6
CBR_g12377 Chara braunii HOM05D002866 ORTHO05D008706 4.5e-47 193.0 360 37.2
GSVIVG01032275001 Vitis vinifera HOM05D002866 ORTHO05D008706 6.1e-44 182.6 124 74.2
SEGI_37372 Sequoiadendron giganteum HOM05D002866 ORTHO05D008706 8.8e-43 178.7 140 60.7
GSVIVG01005702001 Vitis vinifera HOM05D002866 ORTHO05D008706 7.4e-42 175.6 126 72.2
ECA233G4879 Erigeron canadensis HOM05D000383 ORTHO05D000730 3.1e-32 143.7 105 64.8
Oeu017777.1 Olea europaea HOM05D002866 ORTHO05D008706 2.0e-31 141.0 109 69.7
BcaNung07329 Brassica carinata HOM05D002866 ORTHO05D008706 6.1e-28 129.4 86 79.1
Oeu031440.1 Olea europaea HOM05D002866 ORTHO05D008706 1.7e-25 121.3 104 56.7
GSVIVG01032273001 Vitis vinifera HOM05D002866 ORTHO05D008706 3.7e-25 120.2 95 66.3
SEGI_06793 Sequoiadendron giganteum HOM05D002866 ORTHO05D014815 1.2e-10 72.0 123 39.0
GSVIVG01006058001 Vitis vinifera HOM05D002866 ORTHO05D441252 4.4e-10 70.1 39 89.7
GSVIVG01005989001 Vitis vinifera HOM05D002866 ORTHO05D440186 9.8e-10 68.9 39 87.2
Lj9A174G23 Lonicera japonica HOM05D002866 ORTHO05D234197 6.6e-06 56.2 116 35.3


User provided reference genes

Program Settings