Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 0.0e+00 1094.7 565 100.0
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 3.0e-262 908.3 500 93.8
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 3.7e-257 891.3 498 92.6
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 1.7e-225 786.2 526 81.0
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 2.1e-220 769.2 490 77.3
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 6.7e-214 747.7 502 74.7
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 2.5e-213 745.7 497 75.5
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 2.4e-211 739.2 503 75.5
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 2.0e-210 736.1 504 75.0
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.9e-209 732.3 480 77.9
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 5.0e-209 731.5 555 70.5
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.1e-208 730.3 483 75.8
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 1.4e-208 729.9 499 75.6
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 1.9e-208 729.6 482 75.9
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 4.2e-208 728.4 491 74.5
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 1.2e-207 726.9 494 74.5
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 1.2e-207 726.9 491 74.9
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 1.6e-207 726.5 488 75.2
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 2.1e-207 726.1 485 75.3
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 2.7e-207 725.7 524 70.2
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 5.1e-206 721.5 488 76.2
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 1.5e-205 719.9 489 75.3
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 2.6e-205 719.2 489 74.8
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 3.3e-205 718.8 522 69.9
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 4.4e-205 718.4 491 73.7
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 7.4e-205 717.6 487 74.7
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 1.7e-204 716.5 504 73.0
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 2.4e-203 712.6 488 74.2
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 1.2e-202 710.3 491 73.9
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 2.9e-201 705.7 487 72.9
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 6.5e-201 704.5 490 73.1
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 6.1e-199 698.0 495 72.1
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 1.0e-198 697.2 491 72.3
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 1.4e-198 696.8 498 70.9
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 1.8e-198 696.4 557 65.7
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 3.0e-198 695.7 498 70.9
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 1.1e-197 693.7 491 71.1
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 2.0e-197 693.0 524 67.4
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 4.4e-197 691.8 480 73.5
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 7.4e-197 691.0 477 73.2
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 4.8e-196 688.3 488 70.9
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 4.8e-196 688.3 494 71.3
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.1e-195 687.2 486 70.8
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 1.1e-195 687.2 485 70.9
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 1.4e-195 686.8 477 73.6
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 1.4e-195 686.8 491 71.3
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 7.0e-195 684.5 482 70.1
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 1.6e-194 683.3 480 72.5
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 4.5e-194 681.8 513 69.2
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 6.1e-191 671.4 491 69.9
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 1.4e-190 670.2 512 66.8
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 3.0e-190 669.1 494 68.4
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.5e-189 666.8 484 70.0
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 9.7e-189 664.1 486 69.5
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 3.1e-187 659.1 498 68.7
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 5.3e-187 658.3 487 69.4
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 7.0e-187 657.9 483 69.8
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 4.5e-186 655.2 495 68.9
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 3.2e-184 649.0 628 56.1
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 8.0e-183 644.4 639 55.2
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 1.4e-182 643.7 483 68.3
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.2e-182 641.7 492 68.5
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 1.5e-181 640.2 440 73.4
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 2.6e-181 639.4 519 64.2
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 1.3e-180 637.1 490 69.2
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 2.8e-180 636.0 496 68.1
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 5.4e-179 631.7 491 69.0
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 7.0e-179 631.3 444 74.1
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 1.0e-177 627.5 466 70.6
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 2.2e-177 626.3 538 60.6
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.1e-171 605.5 430 70.5
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 5.4e-171 605.1 412 73.5
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 1.6e-170 603.6 501 62.5
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 5.9e-170 601.7 491 63.1
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 1.3e-169 600.5 503 63.2
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.3e-169 600.5 503 63.8
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 2.3e-169 599.7 417 73.9
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 1.9e-168 596.7 432 71.5
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 3.6e-167 592.4 500 64.0
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 6.8e-166 588.2 518 61.2
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 1.8e-163 580.1 528 58.9
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 6.2e-159 565.1 501 60.5
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 1.3e-156 557.4 428 67.3
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 3.7e-156 555.8 394 72.1
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 6.4e-156 555.1 421 67.5
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.4e-155 553.9 482 60.6
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.1e-150 537.7 540 55.4
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.1e-150 537.7 483 58.8
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 2.0e-149 533.5 486 58.2
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 3.4e-149 532.7 551 54.3
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 8.3e-148 528.1 485 56.9
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.7e-146 523.1 386 69.7
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 2.7e-146 523.1 398 67.8
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 3.1e-142 509.6 528 54.5
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 8.1e-135 485.0 398 65.6
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 3.1e-134 483.0 411 62.3
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 6.9e-134 481.9 441 59.4
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 3.4e-133 479.6 432 59.5
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 2.4e-131 473.4 441 58.3
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 1.6e-130 470.7 420 58.3
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 4.6e-130 469.2 377 63.4
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.7e-129 467.2 396 63.4
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 3.4e-117 426.4 302 70.5
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 9.3e-115 418.3 500 46.0
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.8e-110 404.1 341 63.9
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 9.3e-107 391.7 360 59.4
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 1.6e-106 391.0 451 49.0
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.9e-104 384.0 271 72.0
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 1.4e-102 377.9 508 43.1
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 6.9e-102 375.6 251 74.5
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 6.7e-97 359.0 315 62.5
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 5.9e-85 319.3 231 71.0
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 6.5e-84 315.8 417 44.1
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 8.5e-76 288.9 450 42.9
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.1e-70 271.9 358 47.5
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 4.5e-69 266.5 180 74.4
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 1.3e-68 265.0 211 67.3
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 3.6e-66 256.9 217 62.2
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 1.2e-64 251.9 219 62.6
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 6.8e-57 226.1 404 38.6
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 9.8e-56 222.2 580 30.7
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.3e-55 221.9 188 61.2
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.6e-53 214.9 198 57.1
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 2.0e-48 198.0 182 59.3
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 3.6e-42 177.2 162 59.9
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 1.5e-40 171.8 133 62.4
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 4.4e-40 170.2 506 31.0
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 1.1e-35 155.6 97 78.4
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.3e-33 147.9 125 54.4
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 6.8e-33 146.4 176 46.0
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.0e-28 132.5 105 66.7
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 2.1e-26 124.8 122 55.7
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 1.8e-25 121.7 103 67.0
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 6.8e-25 119.8 86 66.3
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 6.4e-23 113.2 516 26.7
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.9e-22 111.7 135 48.9
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.9e-22 111.7 135 48.9
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 5.4e-22 110.2 89 70.8
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 1.0e-20 105.9 69 73.9
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.5e-19 102.1 69 75.4
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 6.9e-17 93.2 56 82.1
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 6.9e-17 93.2 66 66.7
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 9.0e-17 92.8 65 64.6
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.6e-16 91.3 62 74.2
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.6e-16 91.3 62 74.2
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 5.8e-16 90.1 64 59.4
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 4.6e-13 80.5 57 59.6
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 6.0e-13 80.1 87 49.4
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.3e-11 74.3 37 91.9
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 4.3e-11 73.9 89 50.6
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 1.6e-10 72.0 73 57.5
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 4.8e-10 70.5 55 65.5
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 7.6e-08 63.2 188 30.3


User provided reference genes

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