Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 2.6e-158 562.0 281 100.0
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 1.3e-136 490.0 282 87.2
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 6.0e-131 471.1 282 84.4
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 7.1e-124 447.6 282 81.9
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 6.3e-80 301.6 288 58.3
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 1.8e-79 300.1 305 56.4
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 3.1e-79 299.3 331 52.6
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 1.2e-78 297.4 280 57.5
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 2.7e-78 296.2 272 59.6
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 3.5e-78 295.8 316 51.6
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 4.5e-78 295.4 314 52.9
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 1.0e-77 294.3 274 59.5
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 1.3e-77 293.9 285 57.5
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.3e-77 293.9 298 56.0
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.3e-77 293.9 298 56.0
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.3e-77 293.9 298 56.0
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 1.7e-77 293.5 327 53.5
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 5.0e-77 292.0 295 55.6
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 6.5e-77 291.6 300 55.3
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 6.5e-77 291.6 329 51.1
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 8.5e-77 291.2 270 59.3
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 1.9e-76 290.0 283 55.5
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 4.2e-76 288.9 302 56.6
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 4.2e-76 288.9 299 54.8
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 5.5e-76 288.5 288 55.9
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 5.5e-76 288.5 332 51.8
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 7.2e-76 288.1 306 51.0
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 9.4e-76 287.7 299 54.8
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 1.6e-75 287.0 305 56.1
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 2.1e-75 286.6 299 53.5
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 2.1e-75 286.6 308 54.2
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 2.7e-75 286.2 280 55.4
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 2.7e-75 286.2 289 54.3
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 4.7e-75 285.4 311 53.7
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 1.0e-74 284.3 286 56.3
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 1.8e-74 283.5 319 52.0
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 8.8e-74 281.2 281 56.6
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.2e-73 280.8 280 57.9
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 2.6e-73 279.6 310 52.3
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 2.6e-73 279.6 310 52.3
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 4.4e-73 278.9 286 56.3
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 5.7e-73 278.5 311 54.3
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 9.8e-73 277.7 315 50.8
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 9.8e-73 277.7 291 52.6
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 9.8e-73 277.7 288 54.5
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 2.8e-72 276.2 265 58.5
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 3.7e-72 275.8 310 52.6
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 4.8e-72 275.4 319 50.8
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 4.8e-72 275.4 305 52.1
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.4e-71 273.9 299 52.5
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.8e-71 273.5 277 57.0
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 5.9e-70 268.5 288 54.9
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 1.0e-69 267.7 288 52.4
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 8.6e-69 264.6 265 55.8
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 8.6e-69 264.6 288 53.1
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 1.5e-68 263.8 263 56.3
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 2.5e-68 263.1 307 48.5
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 5.5e-68 261.9 265 55.5
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 5.5e-68 261.9 297 50.2
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 7.2e-68 261.5 271 52.4
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 1.6e-67 260.4 282 51.8
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 1.6e-67 260.4 385 42.6
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 2.1e-67 260.0 280 52.1
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 1.0e-66 257.7 273 51.6
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 1.4e-66 257.3 261 54.0
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 1.4e-66 257.3 277 53.4
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 2.6e-65 253.1 311 48.9
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 4.4e-65 252.3 260 53.1
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 4.9e-64 248.8 263 50.6
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 1.8e-63 246.9 256 52.0
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 3.1e-63 246.1 260 53.5
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 3.1e-63 246.1 262 53.4
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 4.1e-63 245.7 328 46.6
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.6e-62 243.8 260 51.5
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 2.7e-62 243.0 259 52.9
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 7.8e-62 241.5 277 50.9
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.0e-61 241.1 280 45.7
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 2.9e-61 239.6 281 46.3
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 8.6e-61 238.0 266 52.6
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 3.3e-60 236.1 260 50.0
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 4.3e-60 235.7 258 49.6
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 9.5e-60 234.6 262 50.8
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 9.5e-60 234.6 260 49.6
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 1.6e-59 233.8 321 43.9
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 2.1e-59 233.4 258 49.6
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 2.8e-59 233.0 258 48.4
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 3.6e-59 232.6 262 48.1
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 4.7e-59 232.3 282 46.8
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 4.7e-59 232.3 256 49.6
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 8.0e-59 231.5 265 48.3
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 8.0e-59 231.5 258 49.2
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 1.0e-58 231.1 259 48.6
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 1.4e-58 230.7 275 44.7
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 1.4e-58 230.7 275 44.7
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 4.0e-58 229.2 284 46.8
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 5.2e-58 228.8 266 48.5
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 4.9e-56 222.2 259 47.1
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 6.4e-56 221.9 260 48.5
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 1.8e-55 220.3 291 44.0
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 1.0e-53 214.5 248 50.8
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 1.0e-53 214.5 253 50.2
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 3.7e-48 196.1 255 47.8
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 6.6e-45 185.3 229 49.8
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 4.3e-44 182.6 303 37.6
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.1e-43 180.3 218 50.5
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.8e-42 177.2 260 41.9
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 1.2e-41 174.5 364 34.9
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 4.4e-41 172.6 260 40.8
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 4.1e-39 166.0 244 42.2
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 3.9e-37 159.5 363 33.9
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 7.3e-36 155.2 104 70.2
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.2e-35 154.5 258 38.0
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 8.1e-35 151.8 111 65.8
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 1.8e-34 150.6 259 37.5
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 1.8e-34 150.6 259 37.5
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 8.9e-34 148.3 426 29.1
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 1.3e-32 144.4 191 44.0
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 8.4e-32 141.7 133 58.6
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 1.9e-28 130.6 99 61.6
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 6.4e-24 115.5 137 49.6
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 5.1e-21 105.9 78 62.8
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 4.3e-20 102.8 250 30.8
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 2.6e-17 93.6 88 53.4
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 2.1e-11 73.9 42 81.0
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 9.0e-10 68.6 46 69.6
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 1.3e-08 64.7 52 55.8
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 2.9e-08 63.5 43 67.4
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 4.9e-08 62.8 71 45.1
PRCOL_00004343 Prasinoderma coloniale HOM05D004311 ORTHO05D005145 5.5e-07 59.3 222 25.7


User provided reference genes

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