Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G015680 Citrullus lanatus HOM05D008235 ORTHO05D009358 3.1e-251 871.3 440 100.0
CsaV3_4G003430 Cucumis sativus L. HOM05D008235 ORTHO05D009358 6.4e-180 634.4 380 85.0
MELO3C017713.2 Cucumis melo HOM05D008235 ORTHO05D009358 6.0e-178 627.9 380 83.9
Sed0015774 Sechium edule HOM05D008235 ORTHO05D009358 1.7e-135 486.9 386 68.4
QL10p049494 Quercus lobata HOM05D008235 ORTHO05D009358 1.4e-49 201.4 401 38.7
Haze_01504 Corylus avellana HOM05D008235 ORTHO05D009358 9.3e-46 188.7 412 36.4
CANSAT78G2326 Cannabis sativa HOM05D008235 ORTHO05D009358 6.7e-36 156.0 403 34.0
MD04G1040900 Malus domestica HOM05D008235 ORTHO05D009358 5.7e-35 152.9 408 33.8
CiPaw.01G099800 Carya illinoinensis HOM05D008235 ORTHO05D009358 2.2e-31 141.0 335 34.3
Dinv22732 Davidia involucrata HOM05D008235 ORTHO05D009358 9.4e-30 135.6 290 35.5
Potri.017G029800 Populus trichocarpa HOM05D008235 ORTHO05D009358 9.4e-30 135.6 394 30.5
Duzib268G0443 Durio zibethinus HOM05D008235 ORTHO05D009358 6.1e-29 132.9 284 35.9
Thecc.04G179500 Theobroma cacao HOM05D008235 ORTHO05D009358 8.8e-28 129.0 410 31.5
Potri.007G128500 Populus trichocarpa HOM05D008235 ORTHO05D009358 2.0e-27 127.9 374 31.0
TAR365G0029 Trochodendron aralioides HOM05D008235 ORTHO05D009358 3.3e-27 127.1 443 30.5
Phvul.011G054200 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 8.2e-26 122.5 389 30.6
Sabra17G0019200 Salix brachista HOM05D008235 ORTHO05D009358 1.1e-25 122.1 368 29.6
Duzib212G0859 Durio zibethinus HOM05D008235 ORTHO05D009358 1.8e-25 121.3 390 31.8
Ciclev10019428m.g Citrus clementina HOM05D008235 ORTHO05D009358 3.1e-25 120.6 396 28.5
CSS0022265 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 9.1e-25 119.0 392 30.9
VMungo1127G1046 Vigna mungo HOM05D008235 ORTHO05D009358 2.9e-23 114.0 390 30.5
Sabra07G0105000 Salix brachista HOM05D008235 ORTHO05D009358 5.0e-23 113.2 272 32.0
CSS0049607 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 1.1e-22 112.1 288 31.6
Ca_20789_v3 Cicer arietinum L. HOM05D008235 ORTHO05D009358 1.5e-22 111.7 390 31.3
Gorai.011G142400 Gossypium raimondii HOM05D008235 ORTHO05D009358 4.2e-22 110.2 393 30.5
arahy.Tifrunner.gnm1.ann1.TK6P88 Arachis hypogaea HOM05D008235 ORTHO05D009358 1.6e-21 108.2 396 27.8
Gohir.D10G129000 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.6e-21 108.2 248 33.9
arahy.Tifrunner.gnm1.ann1.V6VI7P Arachis hypogaea HOM05D008235 ORTHO05D009358 3.6e-21 107.1 396 29.3
Manes.04G042909 Manihot esculenta HOM05D008235 ORTHO05D009358 4.7e-21 106.7 397 31.5
Gorai.005G128900 Gossypium raimondii HOM05D008235 ORTHO05D009358 6.1e-21 106.3 378 29.6
Gohir.D02G114100 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.4e-20 105.1 389 29.3
Glyma.13G344300 Glycine max HOM05D008235 ORTHO05D009358 2.3e-20 104.4 238 30.3
Gohir.A10G137600 Gossypium hirsutum HOM05D008235 ORTHO05D009358 4.0e-20 103.6 248 33.1
Lj3g0014084 Lotus japonicus HOM05D008235 ORTHO05D009358 1.1e-19 102.1 404 29.2
COL.COLO4_07668 Corchorus olitorius HOM05D008235 ORTHO05D009358 2.0e-19 101.3 281 31.0
Gohir.A03G088800 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.7e-18 98.2 375 28.5
GSVIVG01010760001 Vitis vinifera HOM05D008235 ORTHO05D009358 2.2e-18 97.8 367 30.8
Manes.11G121000 Manihot esculenta HOM05D008235 ORTHO05D009358 3.7e-18 97.1 380 29.2
Lalb_Chr22g0352131 Lupinus albus HOM05D008235 ORTHO05D009358 6.3e-18 96.3 387 28.2
Nn1g09629 Nelumbo nucifera HOM05D008235 ORTHO05D009358 8.2e-18 95.9 442 30.1
TAR636G0036 Trochodendron aralioides HOM05D008235 ORTHO05D009358 1.1e-17 95.5 355 29.0
Actinidia35979 Actinidia chinensis HOM05D008235 ORTHO05D009358 1.4e-17 95.1 408 29.4
Dinv44188 Davidia involucrata HOM05D008235 ORTHO05D009358 1.4e-17 95.1 394 28.2
Actinidia34601 Actinidia chinensis HOM05D008235 ORTHO05D009358 2.0e-16 91.3 404 29.2
Glyma.11G127600 Glycine max HOM05D008235 ORTHO05D009358 2.7e-16 90.9 281 27.8
Glyma.12G052200 Glycine max HOM05D008235 ORTHO05D009358 2.7e-16 90.9 373 27.9
vmacro00622 Vaccinium macrocarpon HOM05D008235 ORTHO05D009358 1.9e-14 84.7 282 29.4
Eucgr.A00083 Eucalyptus grandis HOM05D008235 ORTHO05D009358 1.0e-12 79.0 268 26.9
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 5.2e-12 76.6 288 28.5
RhsimUnG0195000 Rhododendron simsii HOM05D008235 ORTHO05D009358 5.2e-12 76.6 288 28.5
THA.LOC104800392 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 1.4e-09 68.6 263 26.6
Psat7g208600 Pisum sativum HOM05D008235 ORTHO05D009358 2.0e-08 64.7 98 36.7
Oeu053824.1 Olea europaea HOM05D008235 ORTHO05D009358 5.9e-08 63.2 367 27.0
Ah.13g072860 Amaranthus hybridus HOM05D019141 ORTHO05D009358 7.7e-08 62.8 348 25.0
Medtr4g067260 Medicago truncatula HOM05D008235 ORTHO05D009358 1.3e-07 62.0 377 25.5
TPR.G34237 Trifolium pratense HOM05D008235 ORTHO05D009358 1.3e-07 62.0 381 25.7
EL10Ac3g05943 Beta vulgaris HOM05D019141 ORTHO05D009358 6.5e-07 59.7 240 27.9
Cpa.g.sc9.283 Carica papaya HOM05D008235 ORTHO05D009358 6.5e-07 59.7 419 25.3
ATR0824G133 Amborella trichopoda HOM05D008235 ORTHO05D009358 1.5e-06 58.5 58 44.8
HPP92_002743 Vanilla planifolia HOM05D028297 ORTHO05D037162 9.4e-06 55.8 279 24.7


User provided reference genes

Program Settings