Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G015580 Citrullus lanatus HOM05D008213 ORTHO05D009787 3.6e-149 531.6 269 100.0
CsaV3_4G003270 Cucumis sativus L. HOM05D008213 ORTHO05D009787 3.3e-94 349.0 279 68.8
MELO3C017723.2 Cucumis melo HOM05D008213 ORTHO05D009787 9.6e-94 347.4 279 69.9
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 8.8e-31 138.3 262 35.5
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 5.7e-30 135.6 304 33.9
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 6.3e-29 132.1 302 35.1
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 3.8e-26 122.9 264 36.0
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 1.5e-25 120.9 307 30.6
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 2.5e-25 120.2 277 33.2
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 2.5e-25 120.2 244 32.8
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 4.3e-25 119.4 280 34.3
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 2.3e-23 113.6 244 30.7
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 2.9e-21 106.7 294 28.9
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 6.4e-21 105.5 273 35.2
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 5.0e-18 95.9 239 30.1
DCAR_017617 Daucus carota HOM05D008213 ORTHO05D009787 1.8e-15 87.4 304 27.6
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 3.4e-14 83.2 271 26.9
VMungo1080G1829 Vigna mungo HOM05D002632 ORTHO05D002881 3.4e-14 83.2 176 35.8
Phvul.011G055300 Phaseolus vulgaris HOM05D010840 ORTHO05D009787 5.8e-14 82.4 235 29.4
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 2.2e-13 80.5 270 28.1
VMungo1127G1898 Vigna mungo HOM05D010840 ORTHO05D009787 2.2e-13 80.5 226 30.1
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 1.9e-12 77.4 188 31.9
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 9.2e-12 75.1 199 31.2
Glyma.12G053300 Glycine max HOM05D010840 ORTHO05D009787 2.0e-11 73.9 239 28.9
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 2.7e-11 73.6 188 30.9
HanXRQChr02g0058051 Helianthus annuus HOM05D008213 ORTHO05D009787 4.6e-11 72.8 188 33.5
ECA248G0875 Erigeron canadensis HOM05D000554 ORTHO05D000860 1.3e-10 71.2 172 32.6
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 3.9e-10 69.7 199 25.1
Glyma.11G128800 Glycine max HOM05D010840 ORTHO05D009787 3.9e-10 69.7 244 29.9
CSS0004350 Camellia sinensis var. sinensis HOM05D008213 ORTHO05D009787 5.0e-10 69.3 212 29.7
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 5.0e-10 69.3 249 24.9
Ah.07g201850 Amaranthus hybridus HOM05D022167 ORTHO05D009787 8.6e-10 68.6 195 30.3
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 8.6e-10 68.6 197 26.4
Sc13g0006830 Simmondsia chinensis HOM05D022167 ORTHO05D009787 1.5e-09 67.8 231 29.4
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 1.9e-09 67.4 180 28.3
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 1.9e-09 67.4 180 28.3
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 5.6e-09 65.9 195 27.7
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 7.3e-09 65.5 180 27.8
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 7.3e-09 65.5 180 27.8
Lj3g0021471 Lotus japonicus HOM05D010840 ORTHO05D009787 7.3e-09 65.5 209 28.2
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 7.3e-09 65.5 198 26.8
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 9.5e-09 65.1 180 27.8
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 1.2e-08 64.7 185 29.7
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 2.1e-08 63.9 189 27.5
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 2.8e-08 63.5 186 28.0
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 2.8e-08 63.5 198 27.8
Lalb_Chr24g0396871 Lupinus albus HOM05D010840 ORTHO05D009787 4.7e-08 62.8 170 30.0
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 8.1e-08 62.0 200 26.5
Glyma.15G030900 Glycine max HOM05D010840 ORTHO05D009787 8.1e-08 62.0 182 33.0
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 1.1e-07 61.6 191 26.2
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 1.1e-07 61.6 191 26.2
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 1.4e-07 61.2 200 26.5
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 1.4e-07 61.2 190 27.4
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 1.8e-07 60.8 180 25.6
Zm00001eb133750 Zea mays HOM05D065009 ORTHO05D009787 1.8e-07 60.8 247 29.1
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 2.3e-07 60.5 192 25.5
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 2.3e-07 60.5 187 27.3
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 2.3e-07 60.5 187 27.3
arahy.Tifrunner.gnm1.ann1.0UQ2B1 Arachis hypogaea HOM05D010840 ORTHO05D009787 3.1e-07 60.1 157 32.5
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 4.0e-07 59.7 192 25.0
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 4.0e-07 59.7 190 27.4
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 4.0e-07 59.7 171 31.6
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 5.2e-07 59.3 199 25.6
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 5.2e-07 59.3 194 26.3
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 8.9e-07 58.5 199 25.6
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 8.9e-07 58.5 199 25.6
AUR62015410 Chenopodium quinoa HOM05D022167 ORTHO05D009787 8.9e-07 58.5 207 26.1
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 1.2e-06 58.2 192 25.0
arahy.Tifrunner.gnm1.ann1.JQ8CCA Arachis hypogaea HOM05D010840 ORTHO05D009787 2.0e-06 57.4 157 31.2
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 2.0e-06 57.4 187 26.7
AUR62002285 Chenopodium quinoa HOM05D022167 ORTHO05D009787 2.0e-06 57.4 230 26.1
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 2.0e-06 57.4 194 26.3
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 2.6e-06 57.0 201 26.4
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 2.6e-06 57.0 194 26.8
ATR0743G282 Amborella trichopoda HOM05D008213 ORTHO05D009787 3.4e-06 56.6 251 22.3
Medtr2g098610 Medicago truncatula HOM05D010840 ORTHO05D009787 5.8e-06 55.8 146 29.5
Aqoxy5G00188 Aquilegia oxysepala HOM05D008213 ORTHO05D009787 9.9e-06 55.1 172 25.6


User provided reference genes

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