Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 2.2e-92 342.4 192 100.0
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 3.7e-55 218.8 184 73.4
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 1.2e-42 177.2 142 73.9
Sed0003747 Sechium edule HOM05D006962 ORTHO05D008696 2.4e-38 162.9 192 54.2
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 3.2e-27 125.9 204 40.7
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 1.2e-24 117.5 209 37.8
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 9.8e-24 114.4 151 43.7
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 2.2e-23 113.2 192 43.2
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 3.7e-23 112.5 187 39.0
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 4.8e-23 112.1 152 46.1
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 6.3e-23 111.7 152 45.4
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 8.3e-23 111.3 182 43.4
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 1.8e-22 110.2 196 41.3
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 1.2e-21 107.5 158 47.5
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 2.0e-21 106.7 202 37.6
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 4.5e-21 105.5 202 38.1
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 5.9e-21 105.1 197 39.6
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 7.7e-21 104.8 198 37.4
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.0e-20 104.4 194 39.7
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.7e-20 103.6 219 34.2
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 1.7e-20 103.6 192 38.0
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 2.3e-20 103.2 224 35.3
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 2.3e-20 103.2 189 40.2
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 2.9e-20 102.8 154 43.5
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 2.9e-20 102.8 193 38.3
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 3.8e-20 102.4 200 36.0
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 3.8e-20 102.4 209 36.4
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 3.8e-20 102.4 159 40.9
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 6.6e-20 101.7 210 37.6
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 6.6e-20 101.7 204 36.3
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 6.6e-20 101.7 210 35.2
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 1.1e-19 100.9 193 38.9
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 1.5e-19 100.5 195 34.9
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 1.9e-19 100.1 184 37.5
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 2.5e-19 99.8 163 37.4
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 4.2e-19 99.0 210 34.8
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 5.5e-19 98.6 159 42.8
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 1.6e-18 97.1 149 44.3
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 2.8e-18 96.3 193 33.7
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 2.8e-18 96.3 218 31.2
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 2.8e-18 96.3 204 35.3
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 3.6e-18 95.9 191 38.7
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 4.7e-18 95.5 193 33.7
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 8.0e-18 94.7 164 36.6
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 1.0e-17 94.4 159 40.9
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 2.3e-17 93.2 154 39.0
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 2.3e-17 93.2 216 34.3
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 4.0e-17 92.4 163 39.9
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 5.2e-17 92.0 155 41.9
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 6.8e-17 91.7 136 39.7
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 8.9e-17 91.3 194 38.1
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 1.5e-16 90.5 197 32.5
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 3.4e-16 89.4 187 36.9
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 3.4e-16 89.4 190 37.4
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 4.4e-16 89.0 157 36.9
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 4.4e-16 89.0 156 43.6
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 5.7e-16 88.6 156 40.4
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 5.7e-16 88.6 151 41.1
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 5.7e-16 88.6 187 34.2
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 7.5e-16 88.2 187 34.2
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 7.5e-16 88.2 187 34.8
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 9.8e-16 87.8 202 33.7
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 1.7e-15 87.0 195 35.9
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 2.2e-15 86.7 159 35.8
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 2.2e-15 86.7 105 44.8
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 2.2e-15 86.7 158 38.0
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 1.8e-14 83.6 152 39.5
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 1.8e-14 83.6 194 32.5
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 4.1e-14 82.4 148 37.8
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 4.1e-14 82.4 161 34.8
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 5.4e-14 82.0 149 36.9
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 9.2e-14 81.3 181 34.8
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 9.2e-14 81.3 151 36.4
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 9.2e-14 81.3 151 36.4
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 9.2e-14 81.3 107 44.9
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 9.2e-14 81.3 165 35.2
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 1.2e-13 80.9 79 51.9
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 1.6e-13 80.5 155 36.1
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 1.6e-13 80.5 155 36.1
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 2.0e-13 80.1 192 31.8
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 2.7e-13 79.7 148 36.5
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 2.7e-13 79.7 148 36.5
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 2.7e-13 79.7 148 36.5
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 7.8e-13 78.2 147 32.0
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 7.8e-13 78.2 95 42.1
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 7.8e-13 78.2 148 37.8
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.0e-12 77.8 58 62.1
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.0e-12 77.8 58 62.1
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 1.0e-12 77.8 216 32.9
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 1.7e-12 77.0 150 36.0
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 1.7e-12 77.0 192 31.2
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 2.3e-12 76.6 58 58.6
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 2.9e-12 76.3 143 32.9
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 3.8e-12 75.9 107 42.1
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 5.0e-12 75.5 107 42.1
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 1.1e-11 74.3 178 31.5
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 2.5e-11 73.2 147 34.0
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 2.5e-11 73.2 142 32.4
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 4.3e-11 72.4 62 54.8
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 5.6e-11 72.0 147 34.0
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 5.6e-11 72.0 155 35.5
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 5.6e-11 72.0 143 35.0
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 9.5e-11 71.2 192 29.2
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 1.2e-10 70.9 143 35.0
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 4.7e-10 68.9 152 36.2
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.0e-09 67.8 62 54.8
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 1.4e-09 67.4 148 33.8
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 1.4e-09 67.4 148 33.8
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 1.8e-09 67.0 171 28.7
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 3.1e-09 66.2 160 33.1
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 2.0e-08 63.5 83 47.0
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 2.9e-07 59.7 151 33.1
SMO141G0097 Selaginella moellendorffii HOM05D002663 ORTHO05D021316 8.3e-07 58.2 142 26.1


User provided reference genes

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