Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G015370 Citrullus lanatus HOM05D006978 ORTHO05D008723 2.2e-199 698.7 346 100.0
CsaV3_4G002940 Cucumis sativus L. HOM05D006978 ORTHO05D008723 1.5e-176 622.9 347 89.9
MELO3C017748.2 Cucumis melo HOM05D006978 ORTHO05D008723 3.2e-174 615.1 353 87.8
Sed0026660 Sechium edule HOM05D006978 ORTHO05D008723 4.2e-142 508.4 346 76.3
QL03p051315 Quercus lobata HOM05D006978 ORTHO05D008723 7.6e-136 487.6 326 69.9
Sabra03G0122900 Salix brachista HOM05D006978 ORTHO05D008723 1.7e-135 486.5 313 72.2
Hma1.2p1_0065F.1_g034960 Hydrangea macrophylla HOM05D006978 ORTHO05D008723 2.2e-135 486.1 287 76.7
CiPaw.05G106100 Carya illinoinensis HOM05D006978 ORTHO05D008723 8.5e-135 484.2 344 68.9
FAN07G2913 Fragaria x ananassa HOM05D006978 ORTHO05D008723 1.4e-134 483.4 346 67.6
FvH4_4g23290 Fragaria vesca HOM05D006978 ORTHO05D008723 1.9e-134 483.0 346 67.6
FAN17G0898 Fragaria x ananassa HOM05D006978 ORTHO05D008723 4.2e-134 481.9 346 67.3
Potri.003G167600 Populus trichocarpa HOM05D006978 ORTHO05D008723 9.3e-134 480.7 310 71.0
RcHm_v2.0_Chr4g0429651 Rosa chinensis HOM05D006978 ORTHO05D008723 2.1e-133 479.6 311 71.1
Dinv11704 Davidia involucrata HOM05D006978 ORTHO05D008723 3.6e-133 478.8 334 68.3
TWI36G1146 Tripterygium wilfordii HOM05D006978 ORTHO05D008723 6.1e-133 478.0 302 72.8
Cfa009396 Carpinus fangiana HOM05D006978 ORTHO05D008723 1.0e-132 477.2 351 68.1
FAN12G0972 Fragaria x ananassa HOM05D006978 ORTHO05D008723 1.0e-132 477.2 346 67.1
Lj3A1073G42 Lonicera japonica HOM05D006978 ORTHO05D008723 2.3e-132 476.1 300 73.0
GSVIVG01000920001 Vitis vinifera HOM05D006978 ORTHO05D008723 2.3e-132 476.1 297 73.7
Ciclev10031990m.g Citrus clementina HOM05D006978 ORTHO05D008723 3.0e-132 475.7 350 67.4
Nn3g16378 Nelumbo nucifera HOM05D006978 ORTHO05D008723 5.1e-132 474.9 301 71.8
TAR371G0953 Trochodendron aralioides HOM05D006978 ORTHO05D008723 6.7e-132 474.6 324 69.4
Thecc.02G200200 Theobroma cacao HOM05D006978 ORTHO05D008723 1.5e-131 473.4 309 70.9
PSO017G5946 Papaver somniferum HOM05D006978 ORTHO05D008723 2.5e-131 472.6 311 70.7
Actinidia09621 Actinidia chinensis HOM05D006978 ORTHO05D008723 1.3e-130 470.3 348 64.7
CSS0048975 Camellia sinensis var. sinensis HOM05D006978 ORTHO05D008723 1.3e-130 470.3 334 67.7
PGR102G2599 Punica granatum HOM05D006978 ORTHO05D008723 2.4e-129 466.1 343 67.3
Prupe.1G221700 Prunus persica HOM05D006978 ORTHO05D008723 6.9e-129 464.5 312 68.9
Solyc01g009970.3 Solanum lycopersicum HOM05D006978 ORTHO05D008723 6.9e-129 464.5 286 72.7
TPR.G2900 Trifolium pratense HOM05D006978 ORTHO05D008723 9.1e-129 464.2 305 71.5
HanXRQChr08g0210001 Helianthus annuus HOM05D006978 ORTHO05D008723 1.2e-128 463.8 338 63.6
PGSC0003DMG400005222 Solanum tuberosum HOM05D006978 ORTHO05D008723 1.2e-128 463.8 286 72.7
Medtr7g022480 Medicago truncatula HOM05D006978 ORTHO05D008723 1.5e-128 463.4 310 70.0
Lj1g0015384 Lotus japonicus HOM05D006978 ORTHO05D008723 3.4e-128 462.2 285 75.4
EL10Ac6g13545 Beta vulgaris HOM05D006978 ORTHO05D008723 4.5e-128 461.8 336 65.8
Duzib248G1034 Durio zibethinus HOM05D006978 ORTHO05D008723 5.9e-128 461.5 311 67.8
Psat3g186920 Pisum sativum HOM05D006978 ORTHO05D008723 5.9e-128 461.5 316 69.3
AUR62028894 Chenopodium quinoa HOM05D006978 ORTHO05D008723 1.0e-127 460.7 286 72.4
CAN.G373.1 Capsicum annuum HOM05D006978 ORTHO05D008723 1.3e-127 460.3 284 71.8
CANSAT01G1132 Cannabis sativa HOM05D006978 ORTHO05D008723 1.7e-127 459.9 346 65.3
PSO478G2402 Papaver somniferum HOM05D006978 ORTHO05D008723 2.9e-127 459.1 311 69.5
Migut.K01011 Erythranthe guttata HOM05D006978 ORTHO05D008723 3.8e-127 458.8 310 67.7
Gorai.005G194100 Gossypium raimondii HOM05D006978 ORTHO05D008723 3.8e-127 458.8 326 66.6
Gohir.A03G149500 Gossypium hirsutum HOM05D006978 ORTHO05D008723 6.5e-127 458.0 326 66.6
CARHR129600 Cardamine hirsuta HOM05D006978 ORTHO05D008723 1.4e-126 456.8 298 71.5
Ca_07142_v3 Cicer arietinum L. HOM05D006978 ORTHO05D008723 1.9e-126 456.4 343 65.6
VMungo1383G2882 Vigna mungo HOM05D000485 ORTHO05D000341 1.9e-126 456.4 286 73.8
MD16G1123900 Malus domestica HOM05D006978 ORTHO05D008723 2.5e-126 456.1 350 65.7
Gohir.D02G172400 Gossypium hirsutum HOM05D006978 ORTHO05D008723 4.2e-126 455.3 326 66.3
Sopen01g005540 Solanum pennellii HOM05D006978 ORTHO05D008723 4.2e-126 455.3 323 65.6
AUR62005659 Chenopodium quinoa HOM05D006978 ORTHO05D008723 1.6e-125 453.4 328 65.9
AL4G31500 Arabidopsis lyrata HOM05D006978 ORTHO05D008723 2.7e-125 452.6 298 70.1
Nitab4.5_0001771g0130 Nicotiana tabacum HOM05D006978 ORTHO05D008723 2.7e-125 452.6 283 71.7
Cc11_g17300 Coffea canephora HOM05D006978 ORTHO05D008723 3.6e-125 452.2 290 69.7
AT2G35450 Arabidopsis thaliana HOM05D006978 ORTHO05D008723 7.9e-125 451.1 297 71.4
ECA233G0335 Erigeron canadensis HOM05D006978 ORTHO05D008723 7.9e-125 451.1 284 71.8
Sp4g17670 Schrenkiella parvula HOM05D006978 ORTHO05D008723 1.8e-124 449.9 350 64.6
Thhalv10016892m.g Eutrema salsugineum HOM05D006978 ORTHO05D008723 2.3e-124 449.5 336 66.1
Oeu011352.1 Olea europaea HOM05D006978 ORTHO05D008723 2.3e-124 449.5 290 70.7
Carub.0004s1713 Capsella rubella HOM05D006978 ORTHO05D008723 3.0e-124 449.1 350 64.9
BcaC02g11649 Brassica carinata HOM05D006978 ORTHO05D008723 3.9e-124 448.7 348 64.4
DCAR_031207 Daucus carota HOM05D006978 ORTHO05D008723 3.9e-124 448.7 299 67.2
Aqoxy5G03257 Aquilegia oxysepala HOM05D006978 ORTHO05D008723 6.7e-124 448.0 318 65.7
Eucgr.B03530 Eucalyptus grandis HOM05D006978 ORTHO05D008723 1.1e-123 447.2 346 65.0
BcaB02g09429 Brassica carinata HOM05D006978 ORTHO05D008723 2.6e-123 446.0 349 63.0
Nitab4.5_0004878g0040 Nicotiana tabacum HOM05D006978 ORTHO05D008723 5.7e-123 444.9 337 62.6
A05p10300 Brassica napus HOM05D006978 ORTHO05D008723 1.7e-122 443.4 350 63.4
BolC4t22921H Brassica oleracea HOM05D006978 ORTHO05D008723 1.7e-122 443.4 349 64.2
arahy.Tifrunner.gnm1.ann1.2517Z7 Arachis hypogaea HOM05D006978 ORTHO05D008723 3.7e-122 442.2 341 63.9
arahy.Tifrunner.gnm1.ann1.HCE1UU Arachis hypogaea HOM05D006978 ORTHO05D008723 3.7e-122 442.2 341 63.9
C04p12730 Brassica napus HOM05D006978 ORTHO05D008723 3.7e-122 442.2 349 63.9
Lalb_Chr10g0092011 Lupinus albus HOM05D006978 ORTHO05D008723 8.2e-122 441.0 306 68.6
BraA05t19968Z Brassica rapa HOM05D006978 ORTHO05D008723 1.1e-121 440.7 350 63.7
THA.LOC104814198 Tarenaya hassleriana HOM05D006978 ORTHO05D008723 1.8e-121 439.9 318 64.8
Glyma.18G285000 Glycine max HOM05D006978 ORTHO05D008723 1.2e-120 437.2 300 66.7
Atru.BG.287.p Acer truncatum HOM05D006978 ORTHO05D008723 1.7e-119 433.3 271 72.7
Os04g0391900 Oryza sativa ssp. japonica HOM05D006978 ORTHO05D008723 2.2e-119 433.0 285 67.7
Aa31LG9G13360 Aethionema arabicum HOM05D006978 ORTHO05D008723 3.8e-119 432.2 348 61.5
SalBow2G2397 Salvia bowleyana HOM05D006978 ORTHO05D008723 1.0e-116 424.1 332 61.7
vmacro16091 Vaccinium macrocarpon HOM05D006978 ORTHO05D008723 1.3e-114 417.2 359 58.8
Sc11g0000330 Simmondsia chinensis HOM05D006978 ORTHO05D008723 4.8e-114 415.2 280 67.9
SEGI_15057 Sequoiadendron giganteum HOM05D006978 ORTHO05D008723 5.3e-113 411.8 327 60.2
Haze_12456 Corylus avellana HOM05D006978 ORTHO05D008723 5.0e-111 405.2 297 69.0
Hund06110 Selenicereus undatus HOM05D006978 ORTHO05D008723 1.9e-110 403.3 347 60.2
Glyma.18G284800 Glycine max HOM05D006978 ORTHO05D008723 2.3e-108 396.4 299 63.2
Phvul.008G016700 Phaseolus vulgaris HOM05D006978 ORTHO05D008723 8.8e-108 394.4 244 73.4
Atru.chr11.2376 Acer truncatum HOM05D006978 ORTHO05D008723 2.2e-106 389.8 245 71.8
Peaxi162Scf00255g00025 Petunia axillaris HOM05D006978 ORTHO05D008723 2.2e-106 389.8 248 69.8
Mapoly0133s0049 Marchantia polymorpha HOM05D006978 ORTHO05D008723 1.4e-105 387.1 298 58.4
Pp3c1_20610 Physcomitrium patens HOM05D006978 ORTHO05D008723 3.1e-105 386.0 285 61.8
SMO118G0021 Selaginella moellendorffii HOM05D006978 ORTHO05D008723 1.7e-103 380.2 289 59.9
ATR0582G006 Amborella trichopoda HOM05D006978 ORTHO05D008723 1.4e-100 370.5 246 67.1
CDE06G2364 Ceratophyllum demersum HOM05D006978 ORTHO05D008723 2.0e-96 356.7 309 58.3
Ah.02g130990 Amaranthus hybridus HOM05D006978 ORTHO05D008723 3.5e-96 355.9 325 57.5
AagrBONN_evm.TU.Sc2ySwM_117.2371 Anthoceros agrestis HOM05D006978 ORTHO05D008723 8.6e-95 351.3 282 57.4
Manes.13G007900 Manihot esculenta HOM05D006978 ORTHO05D008723 2.0e-91 340.1 255 65.5
Zm00001eb421220 Zea mays HOM05D006978 ORTHO05D008723 1.9e-78 297.0 195 67.2
MCO09G507 Micromonas commoda HOM05D006978 ORTHO05D008723 6.0e-72 275.4 309 46.3
MSTRG.476 Avicennia marina HOM05D006978 ORTHO05D008723 1.6e-64 250.8 155 74.2
Cpa.g.sc99.56 Carica papaya HOM05D006978 ORTHO05D008723 1.9e-54 217.2 144 66.7
MBI11_g38268_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 4.6e-48 196.1 110 75.5
Glyma.02G096500 Glycine max HOM05D006978 ORTHO05D008723 2.3e-47 193.7 114 70.2
Hma1.2p1_0065F.1_g034970 Hydrangea macrophylla HOM05D006978 ORTHO05D008723 3.1e-44 183.3 99 83.8
PRCOL_00001136 Prasinoderma coloniale HOM05D006978 ORTHO05D008723 3.1e-44 183.3 288 38.2
SalBow2G1646 Salvia bowleyana HOM05D006978 ORTHO05D008723 2.9e-42 176.8 105 77.1
MBI11_g38269_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 9.3e-33 145.2 111 58.6
Actinidia34017 Actinidia chinensis HOM05D006978 ORTHO05D008723 1.1e-28 131.7 156 44.2
arahy.Tifrunner.gnm1.ann1.5L80US Arachis hypogaea HOM05D006978 ORTHO05D008723 1.1e-28 131.7 92 72.8
Rhsim12G0096200 Rhododendron simsii HOM05D006978 ORTHO05D008723 2.2e-26 124.0 113 54.9
Cpa.g.sc99.55 Carica papaya HOM05D006978 ORTHO05D008723 1.7e-18 97.8 134 44.8
Peaxi162Scf00255g00026 Petunia axillaris HOM05D006978 ORTHO05D008723 6.9e-12 75.9 82 52.4
arahy.Tifrunner.gnm1.ann1.0RBU3Z Arachis hypogaea HOM05D006978 ORTHO05D008723 1.2e-11 75.1 55 52.7
MBI11_g31938_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 1.9e-09 67.8 49 61.2
RcHm_v2.0_Chr2g0135531 Rosa chinensis HOM05D006978 ORTHO05D008723 1.9e-09 67.8 39 74.4
MBI11_g31937_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 1.2e-08 65.1 42 64.3


User provided reference genes

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