Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 4.5e-190 667.9 379 100.0
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 8.4e-144 514.2 379 78.4
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 3.9e-141 505.4 379 77.3
Sed0008321 Sechium edule HOM05D007666 ORTHO05D009567 4.3e-132 475.3 389 74.6
Sed0007649 Sechium edule HOM05D007666 ORTHO05D009567 2.7e-94 349.7 296 69.9
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 2.2e-75 287.0 393 50.1
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 1.3e-72 277.7 383 48.3
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 4.2e-71 272.7 372 48.4
MD06G1105600 Malus domestica HOM05D007666 ORTHO05D009567 1.4e-69 267.7 384 46.6
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 1.7e-67 260.8 376 45.7
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 4.8e-67 259.2 399 47.4
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 1.1e-66 258.1 383 44.6
Ciclev10020669m.g Citrus clementina HOM05D007666 ORTHO05D009567 3.1e-66 256.5 382 46.9
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 7.0e-66 255.4 386 45.1
Manes.01G049375 Manihot esculenta HOM05D007666 ORTHO05D009567 4.2e-63 246.1 258 57.0
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 5.5e-63 245.7 230 57.4
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 7.2e-63 245.4 382 49.2
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 1.2e-62 244.6 395 44.1
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 4.7e-62 242.7 383 45.4
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 1.8e-61 240.7 382 47.9
Actinidia22150 Actinidia chinensis HOM05D007666 ORTHO05D009567 1.3e-59 234.6 251 57.8
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 2.8e-59 233.4 230 55.7
FAN18G2245 Fragaria x ananassa HOM05D007666 ORTHO05D009567 1.4e-58 231.1 391 43.2
FvH4_5g04480 Fragaria vesca HOM05D007666 ORTHO05D009567 2.4e-58 230.3 391 43.0
FAN08G0521 Fragaria x ananassa HOM05D007666 ORTHO05D009567 3.1e-58 229.9 389 42.7
FAN13G3316 Fragaria x ananassa HOM05D007666 ORTHO05D009567 3.1e-58 229.9 391 43.0
RcHm_v2.0_Chr7g0195021 Rosa chinensis HOM05D007666 ORTHO05D009567 7.0e-58 228.8 384 43.2
FAN18G0717 Fragaria x ananassa HOM05D007666 ORTHO05D009567 9.2e-58 228.4 391 42.7
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 3.5e-57 226.5 369 43.4
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 5.9e-57 225.7 385 42.3
Gorai.003G080900 Gossypium raimondii HOM05D007666 ORTHO05D009567 1.0e-56 224.9 260 51.2
Gohir.D03G082600 Gossypium hirsutum HOM05D007666 ORTHO05D009567 2.9e-56 223.4 260 51.2
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 2.3e-53 213.8 382 45.8
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 8.9e-53 211.8 231 54.5
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 3.4e-52 209.9 385 38.2
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 3.4e-52 209.9 403 40.4
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 9.8e-52 208.4 386 40.9
AL2G10470 Arabidopsis lyrata HOM05D007666 ORTHO05D009567 2.9e-51 206.8 266 51.9
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 3.7e-51 206.5 231 52.4
CARHR046550 Cardamine hirsuta HOM05D007666 ORTHO05D009567 8.3e-51 205.3 271 48.7
TAR636G3598 Trochodendron aralioides HOM05D007666 ORTHO05D009567 3.2e-50 203.4 229 49.3
HanXRQChr06g0166511 Helianthus annuus HOM05D007666 ORTHO05D009567 4.1e-50 203.0 383 38.4
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 7.0e-50 202.2 233 51.1
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 1.6e-49 201.1 386 38.1
Gohir.A02G101700 Gossypium hirsutum HOM05D007666 ORTHO05D009567 2.7e-49 200.3 261 48.3
Peaxi162Scf00074g00106 Petunia axillaris HOM05D007666 ORTHO05D009567 3.5e-49 199.9 364 44.0
Lj2C168T16 Lonicera japonica HOM05D007666 ORTHO05D009567 4.6e-49 199.5 207 53.1
Thhalv10023582m.g Eutrema salsugineum HOM05D007666 ORTHO05D009567 8.6e-48 195.3 264 46.6
Carub.0002s0039 Capsella rubella HOM05D007666 ORTHO05D009567 3.3e-47 193.4 266 49.2
THA.LOC104817649 Tarenaya hassleriana HOM05D007666 ORTHO05D009567 3.3e-47 193.4 278 47.5
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 5.6e-47 192.6 365 46.6
Gorai.006G207700 Gossypium raimondii HOM05D007666 ORTHO05D009567 7.3e-47 192.2 222 47.7
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 2.8e-46 190.3 317 44.5
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 6.2e-46 189.1 376 40.4
Hund14226 Selenicereus undatus HOM05D007666 ORTHO05D009567 6.2e-46 189.1 248 46.8
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 8.0e-46 188.7 222 47.7
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 1.1e-45 188.3 253 46.2
Gohir.D09G185200 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.4e-45 188.0 222 47.3
AT1G64385 Arabidopsis thaliana HOM05D007666 ORTHO05D009567 2.3e-45 187.2 388 40.2
vmacro11431 Vaccinium macrocarpon HOM05D007666 ORTHO05D009567 8.9e-45 185.3 512 35.5
SpUn0393_0010 Schrenkiella parvula HOM05D007666 ORTHO05D009567 2.6e-44 183.7 271 48.0
AUR62010832 Chenopodium quinoa HOM05D007666 ORTHO05D009567 2.9e-43 180.3 252 46.4
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 3.2e-42 176.8 401 34.9
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 7.0e-42 175.6 336 39.9
EL10Ac5g12908 Beta vulgaris HOM05D007666 ORTHO05D009567 1.2e-41 174.9 382 38.0
BcaB07g31505 Brassica carinata HOM05D007666 ORTHO05D009567 6.0e-41 172.6 270 47.4
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 6.0e-41 172.6 299 39.8
BraA09t37080Z Brassica rapa HOM05D007666 ORTHO05D009567 1.7e-40 171.0 276 46.4
A09p14330 Brassica napus HOM05D007666 ORTHO05D009567 2.3e-40 170.6 272 44.1
COL.COLO4_10690 Corchorus olitorius HOM05D007666 ORTHO05D009567 2.3e-40 170.6 267 44.2
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 3.0e-40 170.2 254 42.1
DCAR_005041 Daucus carota HOM05D007666 ORTHO05D009567 1.9e-39 167.5 202 46.5
Aa31LG2G1390 Aethionema arabicum HOM05D007666 ORTHO05D009567 5.6e-39 166.0 265 44.9
C09p17230 Brassica napus HOM05D007666 ORTHO05D009567 5.6e-39 166.0 272 44.5
BolC9t54623H Brassica oleracea HOM05D007666 ORTHO05D009567 5.6e-39 166.0 272 44.5
Dinv37538 Davidia involucrata HOM05D007666 ORTHO05D009567 9.5e-39 165.2 254 46.5
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 9.5e-39 165.2 347 37.5
BcaC04g22624 Brassica carinata HOM05D007666 ORTHO05D009567 1.2e-38 164.9 272 43.4
Duzib205G0056 Durio zibethinus HOM05D007666 ORTHO05D009567 1.2e-36 158.3 230 44.8
Lsat_1_v5_gn_3_10540 Lactuca sativa HOM05D007666 ORTHO05D009567 2.0e-36 157.5 403 33.7
AUR62019830 Chenopodium quinoa HOM05D007666 ORTHO05D009567 1.9e-34 151.0 197 48.2
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 2.1e-33 147.5 251 43.4
MD14G1127900 Malus domestica HOM05D007666 ORTHO05D009567 2.7e-33 147.1 186 48.9
HPP92_005518 Vanilla planifolia HOM05D007666 ORTHO05D009567 1.7e-32 144.4 342 34.2
Atru.chr2.3612 Acer truncatum HOM05D007666 ORTHO05D009567 3.0e-32 143.7 159 50.9
Nn3g19029 Nelumbo nucifera HOM05D007666 ORTHO05D009567 7.3e-31 139.0 156 53.2
Actinidia04207 Actinidia chinensis HOM05D007666 ORTHO05D009567 6.8e-29 132.5 251 40.6
Zm00001eb344230 Zea mays HOM05D007666 ORTHO05D009567 1.1e-21 108.6 350 31.4
FAN04G1782 Fragaria x ananassa HOM05D007666 ORTHO05D009567 8.4e-19 99.0 234 36.3
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 2.1e-14 84.3 195 37.4
COL.COLO4_10689 Corchorus olitorius HOM05D007666 ORTHO05D009567 1.4e-13 81.6 94 44.7
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 2.4e-13 80.9 223 32.3
Solyc08g082240.1 Solanum lycopersicum HOM05D007666 ORTHO05D009567 1.2e-12 78.6 99 51.5
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 6.4e-11 72.8 387 27.9
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 3.2e-10 70.5 228 30.7
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 4.6e-09 66.6 222 31.1
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 1.0e-08 65.5 220 30.0
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 1.3e-08 65.1 241 27.4
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 1.8e-08 64.7 264 28.8
Pp3c1_25250 Physcomitrium patens HOM05D029953 ORTHO05D005170 2.3e-08 64.3 241 27.0
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 3.9e-08 63.5 336 28.3
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 8.7e-08 62.4 228 28.1
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 1.1e-07 62.0 244 28.7
Mapoly0014s0172 Marchantia polymorpha HOM05D029953 ORTHO05D009567 1.5e-07 61.6 276 26.8
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 2.5e-07 60.8 258 29.8
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 9.6e-07 58.9 232 29.7
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 8.1e-06 55.8 246 28.5


User provided reference genes

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