Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G014720 Citrullus lanatus HOM05D007396 ORTHO05D009228 4.3e-172 607.8 294 100.0
CsaV3_4G028760 Cucumis sativus L. HOM05D007396 ORTHO05D009228 1.8e-133 479.6 299 81.9
Sed0010526 Sechium edule HOM05D007396 ORTHO05D009228 1.7e-123 446.4 314 76.1
Prupe.3G025300 Prunus persica HOM05D007396 ORTHO05D009228 5.7e-108 394.8 322 64.9
Solyc03g113510.2 Solanum lycopersicum HOM05D007396 ORTHO05D009228 2.4e-106 389.4 326 63.2
Sopen03g032560 Solanum pennellii HOM05D007396 ORTHO05D009228 4.1e-106 388.7 329 62.6
CAN.G999.17 Capsicum annuum HOM05D007396 ORTHO05D009228 2.0e-105 386.3 328 61.0
PGSC0003DMG400024566 Solanum tuberosum HOM05D007396 ORTHO05D009228 2.0e-105 386.3 326 61.7
FvH4_6g36570 Fragaria vesca HOM05D007396 ORTHO05D009228 1.0e-104 384.0 324 63.9
FAN14G5522 Fragaria x ananassa HOM05D000163 ORTHO05D009228 1.3e-104 383.6 324 63.6
Nitab4.5_0000642g0070 Nicotiana tabacum HOM05D007396 ORTHO05D009228 3.8e-104 382.1 336 61.9
PSO063G4472 Papaver somniferum HOM05D007396 ORTHO05D009228 3.8e-104 382.1 336 62.5
PSO170G5362 Papaver somniferum HOM05D007396 ORTHO05D009228 8.6e-104 380.9 336 62.5
Eucgr.E02270 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.1e-103 380.6 313 63.9
RcHm_v2.0_Chr2g0149061 Rosa chinensis HOM05D007396 ORTHO05D009228 1.1e-103 380.6 324 63.3
Eucgr.E02321 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.9e-103 379.8 313 63.3
Eucgr.E02613 Eucalyptus grandis HOM05D007396 ORTHO05D009228 5.6e-103 378.3 313 63.3
CiPaw.01G206900 Carya illinoinensis HOM05D007396 ORTHO05D009228 1.6e-102 376.7 315 63.2
vmacro00415 Vaccinium macrocarpon HOM05D007396 ORTHO05D009228 2.8e-102 375.9 316 62.0
Eucgr.E02934 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.6e-102 375.6 313 62.9
FAN09G0647 Fragaria x ananassa HOM05D007396 ORTHO05D009228 8.0e-102 374.4 324 63.0
Aqoxy2G02658 Aquilegia oxysepala HOM05D007396 ORTHO05D009228 4.0e-101 372.1 328 58.2
Gorai.003G062400 Gossypium raimondii HOM05D007396 ORTHO05D009228 4.0e-101 372.1 317 62.1
Nn8g41117 Nelumbo nucifera HOM05D007396 ORTHO05D009228 4.0e-101 372.1 340 57.9
Cc02_g09240 Coffea canephora HOM05D007396 ORTHO05D009228 5.2e-101 371.7 319 60.2
Gohir.A02G117900 Gossypium hirsutum HOM05D007396 ORTHO05D009228 5.2e-101 371.7 318 62.3
Manes.06G178800 Manihot esculenta HOM05D007396 ORTHO05D009228 5.2e-101 371.7 315 61.0
Cpa.g.sc176.25 Carica papaya HOM05D007396 ORTHO05D009228 1.5e-100 370.2 326 60.4
Oeu045511.1 Olea europaea HOM05D007396 ORTHO05D009228 1.5e-100 370.2 306 63.4
Ciclev10013937m.g Citrus clementina HOM05D007396 ORTHO05D009228 3.4e-100 369.0 316 61.4
Gohir.D03G058600 Gossypium hirsutum HOM05D007396 ORTHO05D009228 4.4e-100 368.6 317 61.8
FAN02G1321 Fragaria x ananassa HOM05D000163 ORTHO05D000219 1.3e-99 367.1 315 62.5
GSVIVG01029532001 Vitis vinifera HOM05D007396 ORTHO05D009228 8.3e-99 364.4 325 59.1
COL.COLO4_38280 Corchorus olitorius HOM05D007396 ORTHO05D009228 1.4e-98 363.6 320 59.1
Nitab4.5_0005451g0030 Nicotiana tabacum HOM05D007396 ORTHO05D009228 1.2e-97 360.5 320 61.6
Lsat_1_v5_gn_4_106220 Lactuca sativa HOM05D007396 ORTHO05D009228 1.6e-97 360.1 308 60.7
CANSAT01G2937 Cannabis sativa HOM05D007396 ORTHO05D009228 3.5e-97 359.0 334 58.1
Cfa003427 Carpinus fangiana HOM05D007396 ORTHO05D009228 3.5e-97 359.0 313 61.7
AUR62025704 Chenopodium quinoa HOM05D007396 ORTHO05D009228 1.0e-96 357.5 330 58.8
THA.LOC104812337 Tarenaya hassleriana HOM05D007396 ORTHO05D009228 3.0e-96 355.9 319 58.3
CARHR017230 Cardamine hirsuta HOM05D007396 ORTHO05D009228 9.5e-95 350.9 325 57.5
HPP92_017379 Vanilla planifolia HOM05D007396 ORTHO05D009228 9.5e-95 350.9 328 56.1
Sp1g14920 Schrenkiella parvula HOM05D007396 ORTHO05D009228 4.7e-94 348.6 327 56.6
Hund05665 Selenicereus undatus HOM05D007396 ORTHO05D009228 1.0e-93 347.4 330 57.9
AUR62001321 Chenopodium quinoa HOM05D007396 ORTHO05D009228 2.3e-93 346.3 303 61.1
MD17G1161100 Malus domestica HOM05D007396 ORTHO05D009228 2.3e-93 346.3 335 57.0
PGR031G2036 Punica granatum HOM05D007396 ORTHO05D009228 2.3e-93 346.3 318 58.5
Thhalv10009697m.g Eutrema salsugineum HOM05D007396 ORTHO05D009228 5.2e-93 345.1 325 56.6
QL03p030511 Quercus lobata HOM05D007396 ORTHO05D009228 6.8e-93 344.7 286 63.3
ECA233G2395 Erigeron canadensis HOM05D007396 ORTHO05D009228 1.5e-92 343.6 326 57.7
AL1G28940 Arabidopsis lyrata HOM05D007396 ORTHO05D009228 2.6e-92 342.8 324 56.5
Eucgr.E02145 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.4e-92 342.4 311 59.8
Carub.0001s1651 Capsella rubella HOM05D007396 ORTHO05D009228 7.5e-92 341.3 324 56.5
EL10Ac7g18125 Beta vulgaris HOM05D007396 ORTHO05D009228 1.3e-91 340.5 313 58.5
Duzib192G0415 Durio zibethinus HOM05D007396 ORTHO05D009228 1.3e-91 340.5 299 59.9
Sc05g0005440 Simmondsia chinensis HOM05D007396 ORTHO05D009228 3.7e-91 339.0 315 56.8
Psat5g306960 Pisum sativum HOM05D007396 ORTHO05D009228 1.9e-90 336.7 274 64.2
Migut.M00713 Erythranthe guttata HOM05D007396 ORTHO05D009228 5.4e-90 335.1 335 54.9
DCAR_005735 Daucus carota HOM05D007396 ORTHO05D009228 1.2e-89 334.0 320 55.9
BcaB03g13031 Brassica carinata HOM05D007396 ORTHO05D009228 2.0e-89 333.2 308 58.1
Aa31LG7G1230 Aethionema arabicum HOM05D007396 ORTHO05D009228 6.0e-89 331.6 369 50.7
Eucgr.E02947 Eucalyptus grandis HOM05D007396 ORTHO05D009228 6.0e-89 331.6 312 58.0
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 2.1e-86 323.2 304 56.2
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 3.6e-86 322.4 293 58.0
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 2.3e-85 319.7 285 58.9
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 8.9e-85 317.8 293 57.0
SGA_v2.0_scaffold71G23969 Striga asiatica HOM05D000927 ORTHO05D009228 1.5e-84 317.0 324 55.2
CDE06G1120 Ceratophyllum demersum HOM05D007396 ORTHO05D009228 4.4e-84 315.5 285 56.1
CSS0031419 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 1.9e-82 310.1 297 56.9
SalBow6G2527 Salvia bowleyana HOM05D007396 ORTHO05D009228 9.2e-82 307.8 295 53.2
HanXRQChr06g0173121 Helianthus annuus HOM05D007396 ORTHO05D009228 2.7e-81 306.2 280 55.4
Os02g0140800 Oryza sativa ssp. japonica HOM05D007396 ORTHO05D009228 6.0e-81 305.1 359 49.9
TWI12G0468 Tripterygium wilfordii HOM05D007396 ORTHO05D009228 1.4e-77 293.9 268 59.0
BcaC07g38814 Brassica carinata HOM05D007396 ORTHO05D009228 1.8e-77 293.5 269 57.6
Eucgr.E02931 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.3e-77 293.1 297 53.9
SEGI_29070 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 2.6e-76 289.7 334 48.2
MBI13_g34300_MAGBIO Magnolia biondii HOM05D007396 ORTHO05D009228 2.9e-75 286.2 229 63.3
AT1G16770 Arabidopsis thaliana HOM05D007396 ORTHO05D009228 5.4e-74 282.0 276 54.3
MELO3C032656.2 Cucumis melo HOM05D007396 ORTHO05D009228 6.0e-73 278.5 165 84.8
Eucgr.J03193 Eucalyptus grandis HOM05D007396 ORTHO05D009228 6.2e-70 268.5 293 51.5
Haze_16206 Corylus avellana HOM05D007396 ORTHO05D009228 1.8e-69 266.9 206 66.0
Medtr2g105720 Medicago truncatula HOM05D007396 ORTHO05D009228 1.2e-68 264.2 215 65.1
Actinidia31122 Actinidia chinensis HOM05D007396 ORTHO05D009228 8.4e-67 258.1 212 63.7
Potri.014G003300 Populus trichocarpa HOM05D007396 ORTHO05D009228 1.1e-66 257.7 327 47.4
Zm00001eb328020 Zea mays HOM05D007396 ORTHO05D009228 3.2e-66 256.1 298 49.0
Eucgr.E02547 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.2e-65 254.2 266 54.1
Eucgr.E02918 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.5e-63 246.5 219 60.7
Potri.004G169900 Populus trichocarpa HOM05D007396 ORTHO05D009228 9.9e-60 234.6 313 48.2
Eucgr.E02214 Eucalyptus grandis HOM05D007396 ORTHO05D009228 8.4e-59 231.5 313 47.3
Eucgr.E02217 Eucalyptus grandis HOM05D007396 ORTHO05D009228 7.9e-57 224.9 190 61.6
CSS0029409 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 8.7e-56 221.5 178 65.2
Eucgr.E02162 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.6e-54 217.2 300 45.0
BcaC05g25536 Brassica carinata HOM05D007396 ORTHO05D009228 6.2e-54 215.3 269 47.2
Pp3c5_8210 Physcomitrium patens HOM05D007396 ORTHO05D009228 1.3e-51 207.6 367 37.1
unitig_32.g11080 Utricularia gibba HOM05D007396 ORTHO05D009228 1.3e-51 207.6 279 42.7
Eucgr.E02226 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.4e-50 203.4 175 61.7
Eucgr.E02284 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.2e-50 203.0 301 43.5
MELO3C010415.2 Cucumis melo HOM05D007396 ORTHO05D009228 3.9e-48 196.1 127 79.5
ATR0626G334 Amborella trichopoda HOM05D007396 ORTHO05D009228 1.3e-46 191.0 170 57.6
CBR_g41808 Chara braunii HOM05D007396 ORTHO05D009228 1.1e-42 177.9 223 43.9
Thecc.06G054000 Theobroma cacao HOM05D007396 ORTHO05D009228 1.9e-42 177.2 125 69.6
Lj7C720T3 Lonicera japonica HOM05D007396 ORTHO05D009228 9.3e-42 174.9 164 56.1
BcaC07g38815 Brassica carinata HOM05D007396 ORTHO05D009228 5.7e-39 165.6 276 38.8
Mapoly0001s0056 Marchantia polymorpha HOM05D007396 ORTHO05D009228 1.3e-19 101.3 246 28.5
BcaC05g25534 Brassica carinata HOM05D000163 ORTHO05D000219 7.2e-18 95.5 88 56.8
Medtr2g105710 Medicago truncatula HOM05D007396 ORTHO05D009228 3.9e-16 89.7 62 67.7
Sabra14G0002100 Salix brachista HOM05D007396 ORTHO05D009228 3.9e-16 89.7 94 50.0
Actinidia31121 Actinidia chinensis HOM05D007396 ORTHO05D009228 1.3e-14 84.7 67 62.7
SEGI_36165 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 3.0e-08 63.5 55 54.5
SEGI_21917 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 6.3e-06 55.8 39 64.1


User provided reference genes

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