Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G014710 Citrullus lanatus HOM05D007364 ORTHO05D009275 4.6e-77 291.2 151 100.0
MELO3C010416.2 Cucumis melo HOM05D007364 ORTHO05D009275 1.3e-60 236.5 149 83.2
Haze_16200 Corylus avellana HOM05D007364 ORTHO05D009275 1.1e-43 180.3 143 64.3
Cfa003431 Carpinus fangiana HOM05D007364 ORTHO05D009275 1.6e-42 176.4 143 64.3
Lj4g0012611 Lotus japonicus HOM05D007364 ORTHO05D009275 5.3e-41 171.4 138 61.6
QL05p088447 Quercus lobata HOM05D007364 ORTHO05D009275 1.5e-40 169.9 143 62.2
Prupe.3G024300 Prunus persica HOM05D007364 ORTHO05D009275 2.0e-40 169.5 141 63.1
arahy.Tifrunner.gnm1.ann1.TFQ65X Arachis hypogaea HOM05D007364 ORTHO05D009275 5.9e-40 167.9 141 61.7
RcHm_v2.0_Chr2g0149211 Rosa chinensis HOM05D007364 ORTHO05D009275 5.9e-40 167.9 143 60.1
FvH4_6g36820 Fragaria vesca HOM05D007364 ORTHO05D009275 7.6e-40 167.5 141 61.0
FAN02G1908 Fragaria x ananassa HOM05D007364 ORTHO05D009275 7.6e-40 167.5 141 61.0
FAN14G5026 Fragaria x ananassa HOM05D007364 ORTHO05D009275 7.6e-40 167.5 141 61.0
arahy.Tifrunner.gnm1.ann1.A7U39C Arachis hypogaea HOM05D007364 ORTHO05D009275 1.3e-39 166.8 141 61.7
Gohir.A05G115400 Gossypium hirsutum HOM05D007364 ORTHO05D009275 1.3e-39 166.8 145 61.4
Ca_17791_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 1.7e-39 166.4 118 66.9
Ca_29552_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 1.7e-39 166.4 118 66.9
Glyma.05G173100 Glycine max HOM05D007364 ORTHO05D009275 2.9e-39 165.6 133 62.4
CsaV3_4G028750 Cucumis sativus L. HOM05D007364 ORTHO05D009275 5.0e-39 164.9 114 77.2
FAN05G2474 Fragaria x ananassa HOM05D007364 ORTHO05D009275 5.0e-39 164.9 141 60.3
Gohir.D05G115800 Gossypium hirsutum HOM05D007364 ORTHO05D009275 5.0e-39 164.9 145 60.0
Glyma.08G130400 Glycine max HOM05D007364 ORTHO05D009275 8.5e-39 164.1 118 67.8
Lalb_Chr07g0185511 Lupinus albus HOM05D007364 ORTHO05D009275 1.1e-38 163.7 134 60.4
Gorai.009G119800 Gossypium raimondii HOM05D007364 ORTHO05D009275 1.4e-38 163.3 145 59.3
Manes.14G008700 Manihot esculenta HOM05D007364 ORTHO05D009275 1.9e-38 162.9 140 60.0
TPR.G6288 Trifolium pratense HOM05D007364 ORTHO05D009275 1.9e-38 162.9 118 64.4
Duzib235G1177 Durio zibethinus HOM05D007364 ORTHO05D009275 7.2e-38 161.0 145 59.3
Psat7g058640 Pisum sativum HOM05D007364 ORTHO05D009275 9.3e-38 160.6 118 63.6
FAN09G0058 Fragaria x ananassa HOM05D007364 ORTHO05D009275 6.1e-37 157.9 130 63.1
Potri.010G254100 Populus trichocarpa HOM05D007364 ORTHO05D009275 7.9e-37 157.5 145 57.2
VMungo0251G1224 Vigna mungo HOM05D007364 ORTHO05D009275 3.0e-36 155.6 139 56.8
PSO063G5199 Papaver somniferum HOM05D007364 ORTHO05D009275 6.7e-36 154.5 142 54.2
Aqoxy5G03758 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 8.7e-36 154.1 114 59.6
Thecc.06G054700 Theobroma cacao HOM05D007364 ORTHO05D009275 8.7e-36 154.1 146 56.8
TAR625G0136 Trochodendron aralioides HOM05D007364 ORTHO05D009275 1.9e-35 152.9 116 59.5
TAR636G2112 Trochodendron aralioides HOM05D007364 ORTHO05D009275 2.5e-35 152.5 141 53.9
MD09G1166600 Malus domestica HOM05D007364 ORTHO05D009275 3.3e-35 152.1 150 55.3
Sed0001602 Sechium edule HOM05D007364 ORTHO05D009275 7.4e-35 151.0 128 60.2
Phvul.002G258200 Phaseolus vulgaris HOM05D007364 ORTHO05D009275 1.3e-34 150.2 137 53.3
CANSAT78G1269 Cannabis sativa HOM05D007364 ORTHO05D009275 3.7e-34 148.7 121 62.0
Atru.chr1.2614 Acer truncatum HOM05D007364 ORTHO05D009275 1.1e-33 147.1 145 56.6
TWI38G2254 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 1.8e-33 146.4 148 54.1
Ah.15g094280 Amaranthus hybridus HOM05D007364 ORTHO05D009275 3.1e-33 145.6 146 52.7
TWI63G0101 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 3.1e-33 145.6 145 51.7
THA.LOC104812333 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 1.5e-32 143.3 146 54.1
Ciclev10013953m.g Citrus clementina HOM05D007364 ORTHO05D009275 2.0e-32 142.9 139 55.4
EL10Ac7g18129 Beta vulgaris HOM05D007364 ORTHO05D009275 3.4e-32 142.1 115 55.7
AUR62001324 Chenopodium quinoa HOM05D007364 ORTHO05D009275 3.4e-32 142.1 150 48.7
AUR62025707 Chenopodium quinoa HOM05D007364 ORTHO05D009275 7.7e-32 141.0 115 56.5
Aa31LG7G1240 Aethionema arabicum HOM05D007364 ORTHO05D009275 1.1e-30 137.1 150 52.0
PSO170G0377 Papaver somniferum HOM05D007364 ORTHO05D009275 7.2e-30 134.4 112 58.0
CARHR017250 Cardamine hirsuta HOM05D007364 ORTHO05D009275 1.6e-29 133.3 139 53.2
Thhalv10009015m.g Eutrema salsugineum HOM05D007364 ORTHO05D009275 1.6e-29 133.3 146 52.1
AT1G16790 Arabidopsis thaliana HOM05D007364 ORTHO05D009275 2.7e-29 132.5 146 53.4
AL1G28960 Arabidopsis lyrata HOM05D007364 ORTHO05D009275 6.1e-29 131.3 146 52.1
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 7.9e-29 131.0 147 51.0
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 7.9e-29 131.0 116 56.9
Eucgr.J03185 Eucalyptus grandis HOM05D007364 ORTHO05D009275 1.0e-28 130.6 143 47.6
COL.COLO4_38285 Corchorus olitorius HOM05D007364 ORTHO05D009275 1.4e-28 130.2 103 63.1
PGR031G1732 Punica granatum HOM05D007364 ORTHO05D009275 1.4e-28 130.2 137 52.6
Aqoxy2G03840 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 1.8e-28 129.8 100 57.0
BcaC07g38817 Brassica carinata HOM05D007364 ORTHO05D009275 1.8e-28 129.8 147 49.7
MBI16_g18204_MAGBIO Magnolia biondii HOM05D007364 ORTHO05D009275 3.0e-28 129.0 113 55.8
Carub.0001s1652 Capsella rubella HOM05D007364 ORTHO05D009275 3.9e-28 128.6 146 51.4
Sp1g14930 Schrenkiella parvula HOM05D007364 ORTHO05D009275 6.7e-28 127.9 146 50.0
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 8.8e-28 127.5 151 49.0
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 1.5e-27 126.7 151 49.0
BcaB03g13030 Brassica carinata HOM05D007364 ORTHO05D009275 3.3e-27 125.6 147 47.6
Nitab4.5_0011805g0010 Nicotiana tabacum HOM05D007364 ORTHO05D009275 7.4e-27 124.4 142 50.0
C05p15020 Brassica napus HOM05D007364 ORTHO05D009275 9.7e-27 124.0 147 48.3
A06p12720 Brassica napus HOM05D007364 ORTHO05D009275 1.7e-26 123.2 147 49.0
BolC5t30217H Brassica oleracea HOM05D007364 ORTHO05D009275 2.2e-26 122.9 147 47.6
BraA06t24432Z Brassica rapa HOM05D007364 ORTHO05D009275 2.2e-26 122.9 147 49.0
Sopen12g034580 Solanum pennellii HOM05D007364 ORTHO05D009275 4.8e-26 121.7 134 51.5
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 6.3e-26 121.3 128 53.9
PGSC0003DMG400004654 Solanum tuberosum HOM05D007364 ORTHO05D009275 8.2e-26 120.9 134 50.7
Peaxi162Scf00062g00099 Petunia axillaris HOM05D007364 ORTHO05D009275 1.4e-25 120.2 127 49.6
Solyc12g099960.1 Solanum lycopersicum HOM05D007364 ORTHO05D009275 1.8e-25 119.8 121 53.7
Hma1.2p1_0191F.1_g083440 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 3.1e-25 119.0 152 44.1
Hma1.2p1_3076F.1_g332395 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 3.1e-25 119.0 152 44.1
Actinidia21894 Actinidia chinensis HOM05D007364 ORTHO05D009275 9.1e-25 117.5 150 46.7
CAN.G484.12 Capsicum annuum HOM05D007364 ORTHO05D009275 2.0e-24 116.3 139 49.6
Actinidia38815 Actinidia chinensis HOM05D007364 ORTHO05D009275 2.6e-24 115.9 142 47.2
THA.LOC104808105 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 7.7e-24 114.4 114 53.5
CiPaw.01G094100 Carya illinoinensis HOM05D007364 ORTHO05D009275 1.7e-23 113.2 93 58.1
Cc09_g07400 Coffea canephora HOM05D007364 ORTHO05D009275 3.8e-23 112.1 128 49.2
CiPaw.01G207600 Carya illinoinensis HOM05D007364 ORTHO05D009275 1.1e-22 110.5 96 58.3
Nitab4.5_0001925g0240 Nicotiana tabacum HOM05D007364 ORTHO05D009275 1.9e-22 109.8 119 50.4
LjContig00484g0025496 Lotus japonicus HOM05D007364 ORTHO05D009275 2.1e-21 106.3 99 55.6
DCAR_001424 Daucus carota HOM05D007364 ORTHO05D009275 3.6e-21 105.5 116 44.8
HPP92_017109 Vanilla planifolia HOM05D007364 ORTHO05D009275 7.9e-21 104.4 141 43.3
HPP92_017099 Vanilla planifolia HOM05D007364 ORTHO05D009275 1.0e-20 104.0 143 44.1
BcaC05g25538 Brassica carinata HOM05D007364 ORTHO05D009275 1.8e-20 103.2 121 50.4
BcaB02g06675 Brassica carinata HOM05D007364 ORTHO05D009275 5.2e-20 101.7 88 61.4
Lsat_1_v5_gn_4_106261 Lactuca sativa HOM05D007364 ORTHO05D009275 9.7e-19 97.4 117 41.0
Oeu047568.2 Olea europaea HOM05D007364 ORTHO05D009275 5.3e-17 91.7 119 43.7
unitig_26.g10058 Utricularia gibba HOM05D007364 ORTHO05D009275 7.0e-17 91.3 149 37.6
Atru.chr2.3597 Acer truncatum HOM05D007364 ORTHO05D009275 1.2e-16 90.5 72 59.7
HanXRQChr04g0125291 Helianthus annuus HOM05D007364 ORTHO05D009275 1.6e-16 90.1 121 40.5
Migut.I01209 Erythranthe guttata HOM05D007364 ORTHO05D009275 4.5e-16 88.6 125 39.2
Lj9P543T41 Lonicera japonica HOM05D007364 ORTHO05D009275 2.9e-15 85.9 102 45.1
SalBow6G2338 Salvia bowleyana HOM05D007364 ORTHO05D009275 6.5e-15 84.7 98 49.0
ECA232G2752 Erigeron canadensis HOM05D007364 ORTHO05D009275 3.2e-14 82.4 96 40.6
SGA_v2.0_scaffold71G23970 Striga asiatica HOM05D007364 ORTHO05D009275 3.2e-14 82.4 140 38.6
Mapoly0061s0135 Marchantia polymorpha HOM05D007364 ORTHO05D009275 1.7e-10 70.1 115 33.9
SEGI_24559 Sequoiadendron giganteum HOM05D007364 ORTHO05D009275 1.8e-09 66.6 105 35.2
AUR62015398 Chenopodium quinoa HOM05D007364 ORTHO05D009275 9.1e-09 64.3 64 43.8
AUR62040375 Chenopodium quinoa HOM05D007364 ORTHO05D009275 5.9e-08 61.6 60 45.0
Pp3c19_20210 Physcomitrium patens HOM05D007364 ORTHO05D009275 7.7e-08 61.2 147 31.3


User provided reference genes

Program Settings