Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 2.8e-163 578.6 298 100.0
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 3.0e-149 531.9 298 91.9
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 9.5e-143 510.4 299 88.6
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 3.1e-133 478.8 268 92.5
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 4.2e-114 415.2 300 73.3
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 6.2e-110 401.4 301 72.1
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 1.8e-109 399.8 300 71.0
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 1.6e-105 386.7 299 68.9
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 1.5e-103 380.2 335 66.3
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 2.5e-103 379.4 299 67.6
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 1.3e-102 377.1 299 66.6
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.6e-102 376.7 299 66.9
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 2.8e-102 375.9 304 65.1
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 4.8e-102 375.2 303 66.7
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 6.2e-102 374.8 323 63.8
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 1.1e-101 374.0 330 64.8
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 5.3e-101 371.7 338 62.1
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 5.3e-101 371.7 301 69.1
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 1.5e-100 370.2 313 64.9
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.5e-100 370.2 332 62.0
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 2.0e-100 369.8 301 66.8
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 2.6e-100 369.4 299 66.6
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.6e-100 369.4 301 68.4
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.6e-100 369.4 301 68.4
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 3.4e-100 369.0 230 83.5
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 7.6e-100 367.9 301 66.8
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 9.9e-100 367.5 338 62.4
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 9.9e-100 367.5 301 66.4
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.7e-99 366.7 230 82.2
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 3.8e-99 365.5 229 82.5
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.9e-99 365.2 229 82.5
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 6.4e-99 364.8 248 77.4
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 1.9e-98 363.2 230 82.2
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.9e-98 363.2 229 81.7
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 2.4e-98 362.8 332 63.6
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 5.5e-98 361.7 299 68.6
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 7.9e-97 357.8 334 60.2
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.8e-96 356.7 324 63.6
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 3.0e-96 355.9 322 62.1
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.9e-96 355.5 338 60.4
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 5.1e-96 355.1 244 76.6
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.1e-95 354.0 224 81.2
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 1.9e-95 353.2 330 61.8
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 1.9e-95 353.2 224 81.7
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 9.6e-95 350.9 230 78.7
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 1.6e-94 350.1 229 78.6
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.8e-94 349.4 230 77.4
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.8e-94 349.4 230 78.3
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 4.8e-94 348.6 230 77.8
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 8.1e-94 347.8 230 78.7
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.1e-93 347.4 230 78.3
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.1e-93 347.4 269 68.4
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 1.4e-93 347.1 220 80.0
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 3.1e-93 345.9 209 85.6
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 4.0e-93 345.5 220 80.5
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 6.9e-93 344.7 226 81.4
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 9.0e-93 344.4 224 79.0
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 1.2e-92 344.0 229 78.2
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.5e-92 343.6 334 60.8
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 5.8e-92 341.7 231 77.5
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 7.6e-92 341.3 219 79.9
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 7.6e-92 341.3 269 67.7
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.0e-91 340.9 240 75.0
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.0e-91 340.9 226 79.6
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 1.0e-91 340.9 226 77.9
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.3e-91 340.5 225 79.6
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 1.7e-91 340.1 231 77.9
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 1.7e-91 340.1 301 61.8
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.7e-91 340.1 272 66.2
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 2.9e-91 339.3 234 75.2
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 2.9e-91 339.3 226 79.6
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 4.9e-91 338.6 272 65.8
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 6.5e-91 338.2 230 76.5
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.1e-90 337.4 221 77.8
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 1.9e-90 336.7 268 66.8
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 2.5e-90 336.3 317 62.8
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 2.5e-90 336.3 233 76.8
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 2.5e-90 336.3 231 76.6
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 2.5e-90 336.3 231 76.6
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 2.5e-90 336.3 233 76.8
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 2.5e-90 336.3 272 65.8
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 4.2e-90 335.5 232 77.6
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 4.2e-90 335.5 219 79.0
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 5.5e-90 335.1 225 78.2
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 7.1e-90 334.7 232 77.2
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 7.1e-90 334.7 221 78.7
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 9.3e-90 334.3 221 78.7
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 9.3e-90 334.3 228 75.9
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.2e-89 334.0 294 64.6
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.6e-89 333.6 232 77.2
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 2.1e-89 333.2 232 77.2
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.7e-89 332.8 228 75.9
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 4.6e-89 332.0 235 73.6
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 6.0e-89 331.6 228 76.8
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.8e-88 330.1 221 77.8
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 1.8e-88 330.1 230 74.3
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 1.8e-88 330.1 221 76.9
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 2.3e-88 329.7 221 78.3
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 2.3e-88 329.7 231 74.0
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 3.9e-88 328.9 220 78.6
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 5.1e-88 328.6 226 75.7
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 1.5e-87 327.0 211 79.1
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.9e-87 326.6 219 77.6
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.9e-87 326.6 220 78.2
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 5.7e-87 325.1 224 73.7
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 2.1e-86 323.2 231 72.7
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 6.3e-86 321.6 231 72.7
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.8e-85 320.1 221 75.6
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 9.0e-85 317.8 218 77.5
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 4.5e-84 315.5 228 71.5
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 5.9e-84 315.1 236 69.9
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 1.0e-83 314.3 241 68.5
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 1.3e-83 313.9 231 70.6
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 2.2e-83 313.2 219 74.9
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.4e-82 310.5 221 72.4
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 6.1e-81 305.1 305 58.4
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 6.7e-80 301.6 222 72.1
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 8.7e-80 301.2 231 69.7
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.5e-79 299.7 216 72.2
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 5.7e-79 298.5 216 70.4
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 9.7e-79 297.7 222 71.6
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 6.3e-78 295.0 219 70.3
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 2.6e-76 289.7 177 86.4
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 2.9e-75 286.2 177 81.9
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.5e-71 273.9 169 82.8
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 7.4e-71 271.6 271 57.6
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 6.3e-70 268.5 190 75.3
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 4.1e-69 265.8 186 75.8
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 3.4e-68 262.7 271 56.8
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.3e-67 260.8 166 80.7
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 3.8e-67 259.2 240 62.5
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.1e-65 253.4 218 63.3
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.1e-63 247.7 210 64.8
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.4e-63 245.7 204 66.7
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 1.3e-62 244.2 330 46.4
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.8e-62 243.0 190 71.1
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.4e-61 240.0 173 74.0
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 3.5e-60 236.1 227 57.3
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 3.5e-60 236.1 227 57.3
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.0e-59 234.6 221 59.7
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 3.2e-58 229.6 190 65.3
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 4.1e-53 212.6 158 72.2
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 5.3e-53 212.2 185 59.5
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.2e-52 211.1 184 60.9
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 1.6e-49 200.7 185 56.8
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 4.0e-48 196.1 234 50.0
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 1.6e-44 184.1 153 64.7
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 8.9e-32 141.7 341 34.0
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 3.7e-30 136.3 241 36.5
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 4.0e-24 116.3 68 82.4
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.0e-19 101.7 210 33.3
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 2.5e-18 97.1 198 32.3
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 8.1e-17 92.0 236 31.8
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.3e-14 84.7 233 31.3
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 6.4e-14 82.4 61 65.6
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 4.6e-12 76.3 46 84.8
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.1e-10 71.6 41 80.5
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 1.6e-09 67.8 42 69.0
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 8.1e-09 65.5 55 60.0
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 1.5e-07 61.2 181 30.4
BcaB04g18771 Brassica carinata HOM05D004368 ORTHO05D004990 1.7e-06 57.8 51 62.7


User provided reference genes

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