Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G014110 Citrullus lanatus HOM05D008318 ORTHO05D010481 8.3e-55 216.9 114 100.0
CsaV3_UNG227960 Cucumis sativus L. HOM05D008318 ORTHO05D010481 8.0e-50 200.3 115 93.0
MELO3C025802.2 Cucumis melo HOM05D008318 ORTHO05D010481 7.5e-48 193.7 115 91.3
Sed0008648 Sechium edule HOM05D008318 ORTHO05D010481 5.8e-40 167.5 119 73.9
QL05p004216 Quercus lobata HOM05D008318 ORTHO05D010481 2.0e-32 142.5 118 68.6
Potri.001G168400 Populus trichocarpa HOM05D008318 ORTHO05D010481 3.2e-30 135.2 120 65.0
Manes.11G019700 Manihot esculenta HOM05D008318 ORTHO05D010481 4.1e-30 134.8 125 65.6
Potri.003G065900 Populus trichocarpa HOM05D008318 ORTHO05D010481 4.1e-30 134.8 120 65.8
Sabra01G0142200 Salix brachista HOM05D008318 ORTHO05D010481 4.1e-30 134.8 116 67.2
MD09G1181800 Malus domestica HOM05D008318 ORTHO05D010481 7.8e-29 130.6 127 60.6
Dinv20430 Davidia involucrata HOM05D008318 ORTHO05D010481 1.3e-28 129.8 117 66.7
CiPaw.02G135200 Carya illinoinensis HOM05D008318 ORTHO05D010481 3.0e-28 128.6 112 66.1
COL.COLO4_30750 Corchorus olitorius HOM05D008318 ORTHO05D010481 3.0e-28 128.6 124 62.1
Haze_16036 Corylus avellana HOM05D008318 ORTHO05D010481 6.6e-28 127.5 109 66.1
Prupe.3G039900 Prunus persica HOM05D008318 ORTHO05D010481 1.1e-27 126.7 122 59.8
Glyma.07G039500 Glycine max HOM05D008318 ORTHO05D010481 9.6e-27 123.6 116 63.8
RcHm_v2.0_Chr2g0145711 Rosa chinensis HOM05D008318 ORTHO05D010481 9.6e-27 123.6 125 61.6
Eucgr.J02810 Eucalyptus grandis HOM05D008318 ORTHO05D010481 1.2e-26 123.2 120 60.0
FvH4_6g34840 Fragaria vesca HOM05D008318 ORTHO05D010481 2.1e-26 122.5 126 60.3
Medtr8g020870 Medicago truncatula HOM05D008318 ORTHO05D010481 2.1e-26 122.5 129 59.7
Ca_23388_v3 Cicer arietinum L. HOM05D008318 ORTHO05D010481 4.7e-26 121.3 128 57.8
Hma1.2p1_0291F.1_g115060 Hydrangea macrophylla HOM05D008318 ORTHO05D010481 6.2e-26 120.9 128 58.6
Ah.08g216830 Amaranthus hybridus HOM05D008318 ORTHO05D010481 8.1e-26 120.6 116 57.8
Cfa003529 Carpinus fangiana HOM05D008318 ORTHO05D010481 1.4e-25 119.8 115 60.9
Lj3g0007896 Lotus japonicus HOM05D008318 ORTHO05D010481 1.4e-25 119.8 125 56.8
Thecc.06G121000 Theobroma cacao HOM05D008318 ORTHO05D010481 1.8e-25 119.4 123 58.5
Psat4g174720 Pisum sativum HOM05D008318 ORTHO05D010481 5.2e-25 117.9 129 59.7
Lalb_Chr25g0281471 Lupinus albus HOM05D008318 ORTHO05D010481 8.9e-25 117.1 114 59.6
TAR383G0433 Trochodendron aralioides HOM05D008318 ORTHO05D010481 1.5e-24 116.3 118 55.9
Ciclev10026763m.g Citrus clementina HOM05D008318 ORTHO05D010481 2.0e-24 115.9 131 55.0
Oeu011091.1 Olea europaea HOM05D008318 ORTHO05D010481 7.6e-24 114.0 121 58.7
TPR.G36619 Trifolium pratense HOM05D008318 ORTHO05D010481 9.9e-24 113.6 129 55.0
Rhsim12G0209900 Rhododendron simsii HOM05D008318 ORTHO05D010481 1.3e-23 113.2 124 58.1
Nitab4.5_0007255g0050 Nicotiana tabacum HOM05D008318 ORTHO05D010481 1.1e-22 110.2 122 54.9
Sc15g0000380 Simmondsia chinensis HOM05D008318 ORTHO05D010481 2.4e-22 109.0 111 55.0
Nn8g38638 Nelumbo nucifera HOM05D008318 ORTHO05D010481 4.2e-22 108.2 119 53.8
FAN09G4084 Fragaria x ananassa HOM05D008318 ORTHO05D010481 1.6e-21 106.3 112 58.0
VMungo0331G0642 Vigna mungo HOM05D008318 ORTHO05D010481 2.1e-21 105.9 128 53.1
FAN14G5086 Fragaria x ananassa HOM05D008318 ORTHO05D010481 4.6e-21 104.8 112 57.1
Gohir.D06G150000 Gossypium hirsutum HOM05D008318 ORTHO05D010481 4.6e-21 104.8 115 55.7
Actinidia27735 Actinidia chinensis HOM05D008318 ORTHO05D010481 7.8e-21 104.0 100 64.0
Aqoxy1G00205 Aquilegia oxysepala HOM05D008318 ORTHO05D010481 7.8e-21 104.0 116 56.0
Actinidia26824 Actinidia chinensis HOM05D008318 ORTHO05D010481 3.0e-20 102.1 100 63.0
Sopen03g041160 Solanum pennellii HOM05D008318 ORTHO05D010481 3.0e-20 102.1 123 51.2
Gohir.A06G144300 Gossypium hirsutum HOM05D008318 ORTHO05D010481 3.9e-20 101.7 113 57.5
Solyc03g123380.1 Solanum lycopersicum HOM05D008318 ORTHO05D010481 8.7e-20 100.5 124 50.8
Gorai.010G175100 Gossypium raimondii HOM05D008318 ORTHO05D010481 1.5e-19 99.8 113 54.9
CAN.G668.44 Capsicum annuum HOM05D008318 ORTHO05D010481 1.9e-19 99.4 125 48.8
DCAR_026413 Daucus carota HOM05D008318 ORTHO05D010481 1.3e-18 96.7 132 47.7
PGSC0003DMG400014028 Solanum tuberosum HOM05D008318 ORTHO05D010481 4.8e-18 94.7 120 52.5
Atru.chr1.3996 Acer truncatum HOM05D008318 ORTHO05D010481 1.8e-17 92.8 123 54.5
Oeu000415.1 Olea europaea HOM05D008318 ORTHO05D010481 1.8e-17 92.8 104 56.7
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 5.8e-16 87.8 103 58.3
MSTRG.10951 Avicennia marina HOM05D008318 ORTHO05D010481 7.6e-16 87.4 130 46.9
Phvul.010G129200 Phaseolus vulgaris HOM05D008318 ORTHO05D010481 2.2e-15 85.9 109 51.4
Actinidia25326 Actinidia chinensis HOM05D008318 ORTHO05D010481 6.4e-15 84.3 86 62.8
EL10Ac7g16416 Beta vulgaris HOM05D008318 ORTHO05D010481 1.9e-14 82.8 90 56.7
Lsat_1_v5_gn_4_93140 Lactuca sativa HOM05D008318 ORTHO05D010481 2.4e-14 82.4 121 43.8
Aa31LG8G1250 Aethionema arabicum HOM05D008318 ORTHO05D010481 2.7e-13 79.0 130 42.3
Manes.04G145300 Manihot esculenta HOM05D008318 ORTHO05D010481 4.3e-11 71.6 71 62.0
SGA_v2.0_scaffold71G23850 Striga asiatica HOM05D008318 ORTHO05D010481 7.4e-11 70.9 120 43.3


User provided reference genes

Program Settings