Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 1.6e-138 496.1 254 100.0
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 1.3e-124 449.9 245 93.9
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 1.6e-122 443.0 238 95.4
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 5.7e-112 407.9 239 87.9
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 8.5e-84 314.3 249 66.7
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 4.7e-82 308.5 240 68.8
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 1.0e-81 307.4 243 68.3
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 2.6e-80 302.8 235 67.7
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 8.2e-79 297.7 238 69.3
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 2.0e-77 293.1 238 65.1
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 8.5e-76 287.7 230 69.1
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.5e-75 287.0 237 62.4
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 1.9e-75 286.6 254 60.6
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 3.2e-75 285.8 238 66.0
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 4.2e-75 285.4 255 62.4
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 5.5e-75 285.0 228 66.2
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 9.4e-75 284.3 251 61.0
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 9.4e-75 284.3 233 66.5
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.6e-74 283.5 230 68.7
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 6.1e-74 281.6 258 62.8
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 8.0e-74 281.2 228 64.5
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 1.4e-73 280.4 240 63.8
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 1.8e-73 280.0 240 62.5
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 1.8e-73 280.0 233 64.8
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 3.0e-73 279.3 258 62.4
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 6.8e-73 278.1 252 61.1
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 8.8e-73 277.7 238 63.9
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 8.8e-73 277.7 237 63.3
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 8.8e-73 277.7 256 58.6
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 1.2e-72 277.3 233 63.5
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 2.6e-72 276.2 237 63.3
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 3.4e-72 275.8 228 63.6
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 4.4e-72 275.4 240 63.3
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 5.7e-72 275.0 245 63.3
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 1.3e-71 273.9 238 62.2
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 1.3e-71 273.9 226 63.7
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 1.7e-71 273.5 237 63.7
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 1.7e-71 273.5 240 62.1
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 2.2e-71 273.1 250 60.4
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 4.8e-71 271.9 238 63.0
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.1e-70 270.8 238 61.3
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 1.1e-70 270.8 229 65.5
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 1.4e-70 270.4 237 62.9
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 2.4e-70 269.6 248 60.5
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 2.4e-70 269.6 239 61.1
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 2.4e-70 269.6 228 64.0
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.1e-70 269.2 238 61.3
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 7.0e-70 268.1 236 61.9
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 7.0e-70 268.1 236 61.9
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 1.6e-69 266.9 236 61.9
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 1.6e-69 266.9 234 62.8
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.5e-69 265.8 225 65.3
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 3.5e-69 265.8 239 61.9
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.5e-69 265.8 288 56.2
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 7.7e-69 264.6 239 60.7
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 7.7e-69 264.6 238 61.8
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 1.3e-68 263.8 236 61.4
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 1.3e-68 263.8 236 61.4
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 2.2e-68 263.1 237 61.2
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 2.9e-68 262.7 238 59.7
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 5.0e-68 261.9 236 61.0
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 1.1e-67 260.8 240 62.1
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 1.1e-67 260.8 230 61.3
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.9e-67 260.0 238 60.1
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 2.5e-67 259.6 235 60.4
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 3.2e-67 259.2 229 63.3
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 4.2e-67 258.8 227 62.1
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 5.5e-67 258.5 239 59.8
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 7.2e-67 258.1 248 58.5
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 9.4e-67 257.7 245 58.8
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 1.2e-66 257.3 242 60.7
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 2.1e-66 256.5 242 60.7
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 2.1e-66 256.5 237 60.8
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 2.7e-66 256.1 240 61.2
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 2.7e-66 256.1 240 61.2
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.4e-65 253.8 238 60.5
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 4.0e-65 252.3 231 61.0
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 6.8e-65 251.5 237 59.9
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 6.8e-65 251.5 230 63.5
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 4.4e-64 248.8 242 58.7
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 7.5e-64 248.1 255 56.1
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 1.7e-63 246.9 151 76.2
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 2.8e-63 246.1 260 53.1
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 6.3e-63 245.0 240 58.8
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 1.1e-62 244.2 262 53.4
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 1.8e-62 243.4 156 75.0
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 2.4e-62 243.0 212 60.4
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 5.4e-62 241.9 230 58.7
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 2.0e-61 240.0 244 56.1
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 3.5e-61 239.2 210 62.9
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 1.3e-60 237.3 239 54.8
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 1.3e-60 237.3 206 60.2
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 1.9e-59 233.4 230 56.1
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 8.0e-58 228.0 234 55.1
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 8.0e-58 228.0 217 56.2
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 1.0e-57 227.6 238 52.5
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 4.0e-57 225.7 252 54.0
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 7.5e-56 221.5 287 47.7
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 1.7e-55 220.3 215 58.1
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 3.7e-55 219.2 151 69.5
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.1e-54 217.6 153 68.0
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 5.4e-54 215.3 242 51.7
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 1.7e-52 210.3 150 69.3
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 2.3e-52 209.9 133 74.4
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.8e-49 200.3 159 63.5
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 2.0e-48 196.8 232 54.3
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 4.1e-46 189.1 229 51.5
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 8.6e-44 181.4 177 52.5
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.5e-43 180.6 238 46.2
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 3.3e-43 179.5 181 54.7
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 3.6e-42 176.0 175 51.4
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 6.2e-42 175.3 139 62.6
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 4.0e-41 172.6 170 57.1
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 7.5e-40 168.3 137 56.9
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 9.8e-40 167.9 194 49.5
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 6.4e-39 165.2 114 70.2
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 4.1e-38 162.5 135 58.5
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 3.0e-36 156.4 151 58.3
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.9e-35 153.7 179 51.4
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.5e-32 144.1 97 78.4
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 9.2e-30 134.8 129 58.1
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 2.1e-29 133.7 70 87.1
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 6.0e-29 132.1 93 73.1
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 1.3e-20 104.4 53 83.0
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 9.6e-19 98.2 112 47.3
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 8.1e-18 95.1 233 31.3
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 1.8e-17 94.0 73 65.8
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 3.4e-16 89.7 54 77.8
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 4.9e-15 85.9 98 49.0
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 8.1e-10 68.6 145 33.1
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 1.4e-09 67.8 144 31.2
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 5.3e-09 65.9 36 77.8
Atru.chr1.3684 Acer truncatum HOM05D005904 ORTHO05D007074 5.5e-06 55.8 78 46.2


User provided reference genes

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