Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 0.0e+00 2202.2 1231 100.0
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 0.0e+00 1962.2 1232 89.1
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 0.0e+00 1947.2 1231 89.4
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 0.0e+00 1780.8 1237 82.7
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 0.0e+00 1672.5 1237 78.5
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 2.5e-306 1055.8 1286 58.1
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 1.2e-289 1000.3 1257 56.4
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 1.7e-283 979.9 1199 57.0
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 7.9e-268 927.9 1258 52.9
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 1.1e-266 924.1 1265 53.0
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 1.3e-262 910.6 1260 52.8
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 3.2e-261 906.0 1261 52.3
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 2.3e-259 899.8 1260 52.2
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 1.8e-256 890.2 1256 51.9
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 1.5e-255 887.1 1212 51.9
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 7.6e-255 884.8 1261 51.1
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 2.2e-254 883.2 1261 51.1
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 5.0e-254 882.1 1261 51.5
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 2.5e-253 879.8 1273 50.6
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 9.3e-253 877.9 1261 50.8
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 4.6e-252 875.5 1257 51.2
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 7.9e-252 874.8 1258 50.6
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 1.2e-247 860.9 1263 50.4
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 2.0e-247 860.1 1256 50.3
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 2.6e-247 859.8 1201 52.0
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 8.5e-246 854.7 1258 50.3
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 4.4e-242 842.4 1257 51.1
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 4.1e-240 835.9 1304 49.5
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 4.1e-240 835.9 1260 50.4
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 1.2e-236 824.3 1242 49.8
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 1.7e-233 813.9 1255 48.2
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 2.8e-233 813.1 1286 48.4
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 3.7e-233 812.8 1264 49.0
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 3.1e-232 809.7 1257 48.2
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 3.5e-231 806.2 1257 49.3
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 1.3e-230 804.3 1264 47.3
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 2.5e-229 800.0 1408 45.5
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 5.2e-227 792.3 1265 48.9
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 3.3e-226 789.6 1253 48.8
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 9.7e-226 788.1 1221 49.8
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.3e-225 787.7 1267 48.2
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 4.8e-225 785.8 1255 44.8
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 5.3e-224 782.3 1258 47.5
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 1.1e-221 774.6 1245 47.1
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 1.1e-216 758.1 1280 47.6
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 1.8e-216 757.3 1260 47.1
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 7.0e-216 755.4 1303 46.6
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 2.9e-214 750.0 1243 48.3
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 6.5e-214 748.8 1261 46.8
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 1.8e-211 740.7 1166 49.4
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 1.6e-204 717.6 1263 45.8
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 2.8e-204 716.8 1186 46.5
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 1.5e-202 711.1 1273 45.9
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 4.6e-191 672.9 1266 41.0
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 5.2e-187 659.4 1302 40.6
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 1.4e-184 651.4 1269 43.9
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 4.6e-183 646.4 1257 45.2
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.6e-180 637.9 1064 46.8
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 4.7e-180 636.3 1212 44.6
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 3.1e-179 633.6 1284 42.6
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 3.8e-177 626.7 1261 44.5
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 6.0e-175 619.4 1272 43.8
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 1.2e-172 611.7 1279 43.4
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 7.1e-168 595.9 1106 43.9
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 9.6e-165 585.5 1179 43.2
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 1.5e-162 578.2 1308 38.8
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 4.2e-160 570.1 1274 43.3
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 4.6e-159 566.6 1048 43.8
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 3.3e-157 560.5 1191 43.7
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 1.4e-155 555.1 1240 41.1
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 5.3e-155 553.1 1255 39.7
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 1.0e-150 538.9 1232 39.7
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 3.9e-150 537.0 1211 39.5
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 1.2e-146 525.4 1259 40.7
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 1.3e-145 521.9 1297 38.4
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 4.9e-145 520.0 1225 36.9
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 1.9e-144 518.1 1220 39.7
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 1.6e-143 515.0 1257 38.6
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 2.2e-140 504.6 1242 40.5
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 1.2e-138 498.8 1029 44.5
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 7.7e-138 496.1 1251 38.0
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 1.0e-134 485.7 1281 38.9
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 1.8e-134 485.0 1206 36.8
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 3.0e-134 484.2 1230 36.2
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 3.3e-133 480.7 1298 37.3
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 3.7e-132 477.2 1229 39.8
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 2.9e-129 467.6 855 48.1
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 6.5e-129 466.5 1257 35.6
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 1.1e-128 465.7 1277 37.8
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 1.9e-128 464.9 585 52.1
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 3.7e-124 450.7 1264 35.9
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 5.3e-123 446.8 1039 37.6
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 2.6e-122 444.5 1264 35.8
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 2.6e-122 444.5 1264 35.8
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 3.8e-121 440.7 1265 38.2
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 8.5e-121 439.5 1262 35.5
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 5.5e-120 436.8 1263 35.4
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 4.7e-119 433.7 1148 40.2
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 9.1e-115 419.5 1236 34.2
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 2.1e-111 408.3 1244 36.1
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 4.8e-100 370.5 1290 34.5
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 2.9e-97 361.3 1066 31.8
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 2.9e-97 361.3 429 51.3
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.0e-94 352.8 911 34.1
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 4.4e-93 347.4 1283 34.4
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 5.6e-88 330.5 432 49.1
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 8.3e-84 316.6 1061 36.2
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 2.7e-82 311.6 1108 34.3
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 6.0e-82 310.5 1122 32.2
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 3.6e-79 301.2 746 35.1
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 1.7e-76 292.4 1346 30.7
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 7.0e-75 287.0 328 53.7
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 8.3e-68 263.5 312 52.2
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 3.0e-65 255.0 1248 30.4
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 3.0e-65 255.0 1316 30.1
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 3.6e-63 248.1 273 54.2
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 1.2e-61 243.0 1045 32.2
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 2.1e-55 222.2 219 57.5
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 6.9e-46 190.7 198 54.5
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 4.5e-45 188.0 438 35.8
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 7.6e-45 187.2 686 29.7
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 1.2e-42 179.9 216 53.7
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 1.5e-37 162.9 541 30.3
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 2.7e-34 152.1 140 61.4
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 1.0e-33 150.2 603 31.0
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 2.3e-33 149.1 155 56.1
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 5.7e-32 144.4 464 30.2
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 7.1e-27 127.5 231 40.7
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 2.1e-26 125.9 105 56.2
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 9.7e-24 117.1 142 45.1
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.6e-23 116.3 168 43.5
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 8.2e-23 114.0 1387 24.5
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.1e-22 113.6 135 57.8
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 9.0e-22 110.5 66 74.2
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 7.7e-21 107.5 131 55.0
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 9.4e-19 100.5 193 36.3
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 2.7e-18 99.0 131 53.4
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 1.4e-17 96.7 139 43.2
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 9.7e-16 90.5 219 33.8
HPP92_028292 Vanilla planifolia HOM05D004845 ORTHO05D005957 5.3e-14 84.7 701 32.5
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 3.8e-12 78.6 151 38.4
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 6.5e-12 77.8 213 31.0
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 3.6e-10 72.0 181 33.1
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 3.9e-09 68.6 100 42.0
SHI11166 Sapria himalayana HOM05D004845 ORTHO05D005957 3.9e-09 68.6 47 72.3


User provided reference genes

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