Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G013360 Citrullus lanatus HOM05D026900 ORTHO05D010143 0.0e+00 1290.8 690 100.0
CsaV3_3G023500 Cucumis sativus L. HOM05D026900 ORTHO05D010143 2.5e-239 832.4 745 66.4
MELO3C013005.2 Cucumis melo HOM05D026900 ORTHO05D010143 8.1e-230 800.8 681 68.9
Sed0025504 Sechium edule HOM05D026900 ORTHO05D010143 1.9e-157 560.5 721 53.0
QL05p019674 Quercus lobata HOM05D008208 ORTHO05D010143 5.0e-46 190.3 756 30.3
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 2.0e-34 151.8 771 28.8
Ciclev10025127m.g Citrus clementina HOM05D008208 ORTHO05D010143 7.8e-31 139.8 694 28.7
Actinidia09010 Actinidia chinensis HOM05D008208 ORTHO05D010143 9.5e-29 132.9 715 28.8
TAR624G0194 Trochodendron aralioides HOM05D008208 ORTHO05D010143 1.2e-28 132.5 711 27.8
Lj9A514T51 Lonicera japonica HOM05D008208 ORTHO05D010143 2.1e-28 131.7 685 26.3
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 2.1e-28 131.7 766 27.9
Actinidia39131 Actinidia chinensis HOM05D008208 ORTHO05D010143 8.4e-25 119.8 717 28.0
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 5.4e-24 117.1 750 26.3
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 3.5e-23 114.4 749 25.5
Oeu002526.1 Olea europaea HOM05D008208 ORTHO05D010143 4.6e-23 114.0 690 26.5
Manes.11G032600 Manihot esculenta HOM05D008208 ORTHO05D010143 2.3e-22 111.7 728 24.6
vmacro17009 Vaccinium macrocarpon HOM05D008208 ORTHO05D010143 3.0e-22 111.3 739 26.3
DCAR_016182 Daucus carota HOM05D002915 ORTHO05D003004 2.8e-20 104.8 739 26.8
CSS0033280 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 3.6e-20 104.4 674 26.9
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 6.2e-20 103.6 672 27.1
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 1.1e-19 102.8 757 25.8
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 1.1e-19 102.8 775 25.0
Nn8g39048 Nelumbo nucifera HOM05D008208 ORTHO05D010143 3.1e-19 101.3 731 26.7
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 4.0e-19 100.9 752 26.5
CiPaw.02G145300 Carya illinoinensis HOM05D008208 ORTHO05D010143 6.9e-19 100.1 755 26.8
Lj5A52T19 Lonicera japonica HOM05D008208 ORTHO05D010143 8.9e-19 99.8 719 25.6
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 1.2e-18 99.4 195 40.0
PGSC0003DMG400002607 Solanum tuberosum HOM05D008208 ORTHO05D010143 1.5e-18 99.0 735 24.1
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 7.6e-18 96.7 742 25.9
MD17G1181700 Malus domestica HOM05D008208 ORTHO05D010143 9.9e-18 96.3 731 25.3
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 3.8e-17 94.4 812 25.4
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 8.4e-17 93.2 747 26.0
Sopen03g039910 Solanum pennellii HOM05D008208 ORTHO05D010143 1.4e-16 92.4 675 24.9
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 5.4e-16 90.5 751 26.0
Solyc03g121080.3 Solanum lycopersicum HOM05D008208 ORTHO05D010143 2.7e-15 88.2 675 24.7
Dinv30428 Davidia involucrata HOM05D008208 ORTHO05D010143 3.5e-15 87.8 210 39.5
Nitab4.5_0004969g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 4.6e-15 87.4 673 25.9
Thecc.06G101100 Theobroma cacao HOM05D008208 ORTHO05D010143 1.5e-13 82.4 665 25.4
Hund07613 Selenicereus undatus HOM05D008208 ORTHO05D010143 3.3e-13 81.3 712 26.5
Prupe.3G057400 Prunus persica HOM05D008208 ORTHO05D010143 4.3e-13 80.9 803 24.0
RcHm_v2.0_Chr2g0140811 Rosa chinensis HOM05D008208 ORTHO05D010143 1.3e-12 79.3 586 27.0
SalBow2G3317 Salvia bowleyana HOM05D008208 ORTHO05D010143 3.6e-12 77.8 725 24.4
Nn6g35343 Nelumbo nucifera HOM05D008208 ORTHO05D010143 1.1e-11 76.3 782 24.4
Sabra01G0150900 Salix brachista HOM05D008208 ORTHO05D010143 1.8e-11 75.5 427 26.0
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 2.4e-11 75.1 226 31.9
Nitab4.5_0006022g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 5.3e-11 73.9 734 23.7
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 1.2e-10 72.8 774 26.2
DCAR_023083 Daucus carota HOM05D008208 ORTHO05D010143 2.0e-10 72.0 237 31.2
CANSAT56G0900 Cannabis sativa HOM05D008208 ORTHO05D010143 7.6e-10 70.1 122 43.4
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 9.9e-10 69.7 134 38.1
COL.COLO4_30526 Corchorus olitorius HOM05D008208 ORTHO05D010143 3.8e-09 67.8 331 26.9
Peaxi162Scf00038g01129 Petunia axillaris HOM05D008208 ORTHO05D010143 4.9e-09 67.4 673 24.8
Sc10g0007610 Simmondsia chinensis HOM05D008208 ORTHO05D010143 4.9e-09 67.4 156 36.5
ATR0705G064 Amborella trichopoda HOM05D008208 ORTHO05D010143 6.4e-09 67.0 715 23.8
MSTRG.11020 Avicennia marina HOM05D008208 ORTHO05D010143 1.1e-08 66.2 711 23.8
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 1.9e-08 65.5 693 24.1
EL10Ac9g21199 Beta vulgaris HOM05D008208 ORTHO05D010143 2.4e-08 65.1 166 38.0
Eucgr.F03082 Eucalyptus grandis HOM05D008208 ORTHO05D010143 2.4e-08 65.1 690 23.2
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 2.4e-08 65.1 713 25.5
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 3.2e-08 64.7 732 24.7
HanXRQChr09g0275691 Helianthus annuus HOM05D008208 ORTHO05D010143 9.3e-08 63.2 264 29.9
ECA232G2142 Erigeron canadensis HOM05D008208 ORTHO05D010143 1.2e-07 62.8 281 27.4
Potri.001G190601 Populus trichocarpa HOM05D008208 ORTHO05D010143 1.6e-07 62.4 333 27.3
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 6.0e-07 60.5 663 23.1
RcHm_v2.0_Chr2g0140801 Rosa chinensis HOM05D008208 ORTHO05D010143 7.9e-07 60.1 137 34.3
CDE05G0720 Ceratophyllum demersum HOM05D008208 ORTHO05D010143 1.3e-06 59.3 32 78.1
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 2.3e-06 58.5 113 38.9
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 2.3e-06 58.5 660 24.4
Os01g0765500 Oryza sativa ssp. japonica HOM05D020829 ORTHO05D023022 3.9e-06 57.8 80 47.5
Atru.chr1.3545 Acer truncatum HOM05D008208 ORTHO05D010143 5.1e-06 57.4 175 28.0
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 8.7e-06 56.6 119 40.3
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 8.7e-06 56.6 140 37.1


User provided reference genes

Program Settings