Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 2.3e-287 991.5 480 100.0
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 1.7e-279 965.3 480 96.9
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 8.9e-276 953.0 480 95.2
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 4.9e-242 840.9 455 87.5
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 2.5e-233 812.0 481 82.7
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.4e-217 759.6 451 80.0
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 7.2e-217 757.3 451 80.3
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 5.7e-214 747.7 439 80.6
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 1.3e-213 746.5 447 79.2
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 2.8e-213 745.3 454 78.4
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 8.2e-213 743.8 451 78.3
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 1.5e-211 739.6 448 77.9
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 1.7e-210 736.1 395 85.3
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 3.2e-209 731.9 448 77.2
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.5e-209 731.1 467 76.2
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 9.4e-209 730.3 439 80.4
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.6e-208 728.4 438 80.6
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 1.5e-206 723.0 452 75.0
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 3.3e-206 721.8 448 76.3
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 7.4e-206 720.7 436 77.5
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.3e-205 719.9 449 77.5
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 3.7e-205 718.4 435 77.2
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 8.2e-205 717.2 434 77.9
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 3.1e-204 715.3 457 74.0
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.2e-203 713.4 441 77.1
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 2.6e-203 712.2 447 76.1
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 3.5e-203 711.8 436 76.8
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 3.5e-203 711.8 457 75.1
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 4.5e-203 711.4 463 76.7
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 4.5e-203 711.4 433 78.1
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 5.9e-203 711.1 448 75.4
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 2.9e-202 708.8 462 75.5
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 3.8e-202 708.4 451 76.9
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 3.8e-202 708.4 437 76.9
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 8.5e-202 707.2 470 76.2
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 1.1e-201 706.8 465 72.7
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 1.1e-201 706.8 463 73.4
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 1.1e-201 706.8 447 74.7
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 2.5e-201 705.7 443 76.5
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 4.2e-201 704.9 446 74.9
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 4.2e-201 704.9 437 76.9
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 7.2e-201 704.1 465 74.4
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 7.2e-201 704.1 436 77.8
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 1.2e-200 703.4 447 74.5
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 1.2e-200 703.4 449 75.7
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 2.1e-200 702.6 447 74.3
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.7e-200 702.2 435 77.2
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 3.6e-200 701.8 449 75.7
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 3.6e-200 701.8 449 75.5
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 3.6e-200 701.8 436 76.1
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 4.7e-200 701.4 435 76.6
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.7e-200 701.4 435 77.7
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 6.1e-200 701.0 440 77.7
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 8.0e-200 700.7 436 75.9
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.8e-199 699.5 449 73.1
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 3.0e-199 698.7 430 77.4
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 4.0e-199 698.4 435 75.9
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 4.0e-199 698.4 467 70.9
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 4.0e-199 698.4 441 75.1
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.0e-199 698.4 443 75.2
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 6.8e-199 697.6 451 72.3
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 6.8e-199 697.6 446 74.4
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 6.8e-199 697.6 436 75.7
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 8.8e-199 697.2 444 73.9
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 1.2e-198 696.8 439 74.9
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 2.6e-198 695.7 446 74.7
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.6e-198 695.7 449 72.6
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 3.4e-198 695.3 432 76.2
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 4.4e-198 694.9 461 72.7
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 7.5e-198 694.1 443 74.9
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 9.7e-198 693.7 394 81.7
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 2.8e-197 692.2 460 73.9
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 2.8e-197 692.2 434 75.1
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 3.7e-197 691.8 433 75.5
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 4.8e-197 691.4 363 85.1
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 4.8e-197 691.4 458 72.1
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 6.3e-197 691.0 437 75.5
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 6.3e-197 691.0 447 74.3
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 6.3e-197 691.0 447 74.3
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 6.3e-197 691.0 439 75.4
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 1.1e-196 690.3 363 85.1
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.1e-196 690.3 434 76.0
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 1.1e-196 690.3 438 75.1
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 1.4e-196 689.9 447 74.3
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 4.1e-196 688.3 439 72.7
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 7.0e-196 687.6 453 72.6
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 7.0e-196 687.6 440 75.5
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 9.1e-196 687.2 443 72.7
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.7e-195 685.6 461 72.0
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 4.5e-195 684.9 435 74.5
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 7.7e-195 684.1 447 73.8
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 7.7e-195 684.1 441 73.7
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.5e-193 679.9 453 71.5
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 1.5e-193 679.9 469 70.8
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 1.5e-193 679.9 441 73.5
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 2.5e-193 679.1 440 74.3
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 3.2e-193 678.7 494 69.2
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 9.4e-193 677.2 445 73.0
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 1.6e-192 676.4 405 77.3
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 2.7e-192 675.6 405 77.3
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 4.4e-190 668.3 433 71.1
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 1.7e-189 666.4 437 73.7
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 2.8e-189 665.6 429 74.8
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 1.4e-188 663.3 433 73.7
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 3.1e-188 662.1 430 75.3
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 1.6e-187 659.8 514 63.8
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 1.3e-186 656.8 442 72.9
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 9.5e-185 650.6 375 79.5
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.1e-184 649.4 431 72.9
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 7.5e-182 641.0 442 69.9
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 2.2e-181 639.4 431 71.0
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 3.3e-177 625.5 429 71.6
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 3.6e-176 622.1 437 67.3
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.0e-175 620.5 446 66.4
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.0e-175 618.6 441 66.4
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 3.4e-174 615.5 444 67.1
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 2.2e-173 612.8 322 87.0
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 9.2e-172 607.4 324 84.9
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 3.5e-171 605.5 344 80.8
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 6.2e-168 594.7 427 68.1
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 3.5e-163 578.9 370 70.3
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 5.2e-159 565.1 290 88.6
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.2e-159 565.1 289 88.2
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 9.9e-158 560.8 406 66.3
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 8.3e-157 557.8 291 86.9
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 6.8e-151 538.1 287 82.2
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 3.2e-148 529.3 342 74.6
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.4e-143 513.8 396 68.4
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.0e-142 510.0 334 67.7
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 3.8e-141 505.8 266 85.7
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 3.6e-136 489.2 302 78.5
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 1.2e-126 457.6 374 55.9
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 4.2e-124 449.1 312 68.6
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 2.7e-123 446.4 300 73.7
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 6.2e-120 435.3 285 68.1
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.0e-106 391.3 342 51.5
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 3.1e-95 353.2 210 78.1
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.9e-92 344.0 318 51.9
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.1e-87 328.2 338 47.0
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 2.9e-69 266.9 138 87.0
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 8.3e-64 248.8 179 65.4
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.5e-54 216.9 109 89.0
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 3.9e-53 213.4 117 81.2
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.7e-51 206.5 119 74.8
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 7.5e-49 199.1 138 64.5
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 6.0e-46 189.5 127 68.5
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.4e-33 147.1 85 80.0
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 9.9e-33 145.6 85 78.8
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 2.8e-27 127.5 80 68.8
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 1.8e-26 124.8 101 60.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 7.9e-14 82.8 52 73.1
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 4.3e-12 77.0 113 44.2
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 5.6e-12 76.6 129 37.2
BcaB01g02088 Brassica carinata HOM05D004680 ORTHO05D039099 6.0e-06 56.6 30 70.0


User provided reference genes

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