Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 0.0e+00 1382.9 721 100.0
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 0.0e+00 1218.8 727 90.2
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 0.0e+00 1191.4 724 89.0
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 0.0e+00 1114.4 726 82.4
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.8e-249 864.8 747 63.6
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 8.2e-249 864.0 738 63.1
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 2.6e-247 859.0 745 62.4
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.6e-244 849.7 745 61.7
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 6.1e-244 847.8 738 62.3
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 1.4e-243 846.7 746 63.4
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.8e-243 846.3 735 62.7
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 2.3e-243 845.9 751 61.7
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 3.3e-242 842.0 743 63.0
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 3.3e-242 842.0 743 62.3
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.3e-242 841.6 742 61.9
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 4.3e-242 841.6 748 61.2
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 6.3e-241 837.8 740 61.8
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.2e-239 833.6 744 61.3
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.7e-239 830.9 712 62.8
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 6.5e-238 827.8 735 61.8
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 7.9e-236 820.8 756 60.3
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.4e-235 820.1 731 60.3
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 2.3e-235 819.3 800 57.6
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 8.8e-235 817.4 705 62.1
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 2.6e-234 815.8 704 63.2
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 1.6e-231 806.6 773 59.4
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 1.3e-230 803.5 730 60.3
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 8.5e-230 800.8 768 57.7
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 7.2e-229 797.7 751 59.1
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 7.2e-229 797.7 800 57.1
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 2.1e-228 796.2 768 57.4
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 2.7e-228 795.8 742 59.7
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 1.1e-224 783.9 749 59.9
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 5.0e-222 775.0 750 58.5
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.2e-220 770.4 849 53.9
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 1.4e-219 766.9 739 59.3
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 3.0e-219 765.8 849 53.8
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 4.0e-219 765.4 745 58.0
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.2e-218 763.8 774 56.3
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 5.7e-218 761.5 773 56.5
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 9.8e-218 760.8 730 58.6
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 2.4e-216 756.1 810 53.5
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 5.4e-216 755.0 639 63.2
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 9.1e-216 754.2 832 52.5
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 1.0e-214 750.7 817 52.9
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 1.1e-213 747.3 754 57.8
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 2.5e-213 746.1 818 52.0
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 2.7e-212 742.7 819 52.0
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 1.8e-211 740.0 821 52.6
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 2.6e-210 736.1 722 57.9
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 9.8e-210 734.2 745 56.5
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 1.1e-208 730.7 698 59.3
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 2.4e-208 729.6 763 55.4
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 4.1e-208 728.8 826 51.8
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 1.2e-207 727.2 716 58.5
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 7.7e-207 724.5 805 52.8
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.5e-205 719.5 812 51.7
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 4.3e-205 718.8 830 53.5
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 2.1e-204 716.5 825 51.6
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 2.8e-204 716.1 753 54.2
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 4.7e-204 715.3 740 54.9
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.5e-202 710.3 782 53.5
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 1.5e-202 710.3 776 53.5
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 2.0e-202 709.9 726 55.8
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 2.0e-202 709.9 693 57.3
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 3.4e-202 709.1 777 53.0
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 3.4e-202 709.1 667 59.7
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 4.4e-202 708.8 726 55.0
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 4.4e-202 708.8 753 54.1
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.3e-201 707.2 729 55.3
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.7e-201 706.8 729 55.7
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 2.9e-201 706.1 736 54.5
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 8.3e-201 704.5 741 55.6
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 1.6e-199 700.3 697 56.4
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 2.0e-199 699.9 744 53.5
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 7.8e-199 698.0 747 53.1
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.3e-198 697.2 747 54.1
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 3.0e-198 696.0 751 54.5
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.1e-197 694.1 732 54.2
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 1.1e-197 694.1 741 54.5
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 1.9e-197 693.3 805 50.9
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 1.2e-196 690.6 741 53.7
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 1.6e-196 690.3 693 56.6
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 4.7e-196 688.7 744 53.5
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.4e-195 687.2 726 54.5
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 5.2e-195 685.3 781 52.6
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.2e-194 684.1 796 50.8
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 4.4e-194 682.2 725 55.0
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 9.8e-194 681.0 732 55.1
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 9.8e-194 681.0 725 53.8
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 2.2e-193 679.9 726 54.3
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 1.9e-192 676.8 729 54.7
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 4.1e-192 675.6 726 54.5
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 9.2e-192 674.5 824 49.5
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 2.7e-191 672.9 690 55.2
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 2.3e-190 669.8 731 53.2
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 5.0e-190 668.7 727 54.5
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 7.3e-189 664.8 744 51.9
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 2.1e-188 663.3 732 52.9
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 8.1e-188 661.4 604 59.4
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 5.2e-187 658.7 737 52.8
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 3.7e-185 652.5 809 49.3
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 4.1e-184 649.0 729 52.8
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 3.0e-182 642.9 713 53.0
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 1.6e-180 637.1 726 51.8
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 8.9e-179 631.3 851 46.4
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 9.9e-178 627.9 772 49.9
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 3.1e-171 606.3 631 53.6
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.5e-170 604.0 710 51.7
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 4.3e-165 585.9 439 66.1
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 9.6e-165 584.7 713 49.9
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.4e-160 570.9 626 54.0
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 8.7e-158 561.6 829 42.7
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 4.0e-155 552.7 842 42.4
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 3.8e-153 546.2 749 45.5
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 8.7e-150 535.0 833 41.5
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 6.0e-143 512.3 497 54.5
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 5.7e-141 505.8 709 45.3
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 4.2e-136 489.6 520 52.7
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.3e-134 484.6 758 43.4
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.6e-111 407.9 755 38.1
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 2.3e-102 377.5 568 41.4
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 4.0e-94 350.1 299 58.5
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.4e-93 346.7 746 35.9
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.7e-92 343.6 485 42.5
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.9e-90 336.3 480 43.3
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.5e-88 330.9 472 42.8
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 2.1e-87 327.8 559 40.3
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.9e-81 307.0 436 40.6
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 8.6e-81 305.8 482 39.4
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 8.6e-81 305.8 482 39.4
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.7e-79 300.1 476 39.5
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.6e-77 294.3 474 39.7
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 5.4e-75 286.6 499 37.9
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.2e-68 264.6 520 38.7
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 5.4e-67 260.0 599 37.7
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 3.3e-64 250.8 382 42.7
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 2.0e-53 214.9 197 52.3
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.8e-44 184.1 203 53.7
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.3e-32 144.4 393 35.9
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 7.1e-27 126.7 92 60.9
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 5.5e-19 100.5 71 69.0
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.3e-17 95.9 376 28.7
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 1.5e-16 92.4 81 54.3
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 7.4e-16 90.1 206 34.0
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 2.1e-10 72.0 74 45.9
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.1e-10 72.0 74 45.9
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 2.7e-10 71.6 53 58.5
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.4e-09 69.3 53 52.8
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.3e-08 64.7 53 49.1
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 3.3e-08 64.7 49 63.3
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 5.7e-08 63.9 45 68.9
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 6.3e-07 60.5 65 50.8
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 1.1e-06 59.7 79 46.8


User provided reference genes

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