Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.3e-182 642.1 325 100.0
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 2.3e-166 589.0 329 92.1
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 3.9e-166 588.2 329 92.1
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 8.4e-153 543.9 327 87.2
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 5.7e-117 424.9 326 70.2
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 7.0e-115 417.9 325 66.8
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 7.0e-115 417.9 324 67.3
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 1.6e-114 416.8 326 67.5
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 2.0e-114 416.4 302 69.9
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.2e-113 412.9 329 66.9
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 8.5e-113 411.0 301 69.8
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 3.2e-112 409.1 300 71.0
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 6.1e-111 404.8 326 68.4
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 6.1e-111 404.8 326 68.7
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.0e-110 404.1 307 67.4
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.0e-110 404.1 301 68.8
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 3.0e-110 402.5 328 64.6
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 6.8e-110 401.4 307 67.1
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 6.8e-110 401.4 301 66.4
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 1.5e-109 400.2 294 70.7
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.4e-107 393.7 323 65.0
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 4.5e-106 388.7 299 66.9
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.7e-106 387.9 300 68.0
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.3e-105 387.1 300 67.7
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.7e-105 386.7 301 64.8
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.9e-105 386.0 300 66.7
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.6e-105 384.8 300 67.0
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 1.1e-104 384.0 327 61.2
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 2.5e-104 382.9 300 67.7
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 3.3e-104 382.5 326 60.4
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 9.5e-104 380.9 325 61.2
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 1.6e-103 380.2 311 63.3
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 2.1e-103 379.8 326 60.4
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 6.1e-103 378.3 310 64.8
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 6.1e-103 378.3 255 73.3
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 1.0e-102 377.5 301 67.1
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 2.3e-102 376.3 326 59.2
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 2.3e-102 376.3 303 65.0
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 3.0e-102 375.9 298 66.8
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 8.9e-102 374.4 301 61.1
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 1.2e-101 374.0 300 62.0
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 1.2e-101 374.0 326 58.9
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 2.0e-101 373.2 301 63.8
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 2.0e-101 373.2 298 65.4
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 3.4e-101 372.5 305 63.0
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 3.4e-101 372.5 270 69.3
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 5.7e-101 371.7 297 66.0
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 7.5e-101 371.3 304 65.1
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.9e-100 369.4 311 64.0
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 3.7e-100 369.0 290 66.2
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 4.9e-100 368.6 319 60.8
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 4.9e-100 368.6 294 65.3
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.4e-99 367.1 304 61.2
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 1.4e-99 367.1 272 68.4
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 1.4e-99 367.1 318 58.8
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 1.8e-99 366.7 326 57.7
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 1.8e-99 366.7 326 59.5
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.8e-99 366.7 290 66.9
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 2.4e-99 366.3 326 61.0
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.2e-99 365.9 304 60.9
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 5.4e-99 365.2 325 58.5
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 5.4e-99 365.2 325 58.5
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 5.4e-99 365.2 307 60.6
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 7.0e-99 364.8 321 60.4
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 7.0e-99 364.8 303 61.1
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 9.2e-99 364.4 323 57.9
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-98 363.6 309 63.4
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 2.7e-98 362.8 326 57.1
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 2.7e-98 362.8 301 63.5
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 1.0e-97 360.9 325 58.2
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 1.3e-97 360.5 321 60.7
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 3.0e-97 359.4 325 58.2
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 6.6e-97 358.2 327 57.8
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 6.6e-97 358.2 323 60.1
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.5e-96 357.1 326 59.8
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 1.9e-96 356.7 301 63.1
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 5.6e-96 355.1 300 63.3
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 3.6e-95 352.4 300 60.3
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 8.0e-95 351.3 321 55.8
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 1.8e-94 350.1 305 61.0
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 8.9e-94 347.8 326 58.3
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.2e-93 347.4 314 60.2
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.2e-93 347.4 301 59.8
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 2.0e-93 346.7 323 57.3
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 2.2e-92 343.2 295 60.7
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 6.4e-92 341.7 322 54.7
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 8.3e-92 341.3 347 55.9
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 1.9e-91 340.1 324 56.5
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 2.4e-91 339.7 290 63.8
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 2.4e-91 339.7 290 63.8
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 3.2e-91 339.3 296 60.1
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 5.4e-91 338.6 269 63.6
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 5.4e-91 338.6 301 56.5
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.6e-90 337.0 302 59.3
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 3.5e-90 335.9 305 57.7
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.5e-90 335.9 302 59.6
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 6.0e-90 335.1 274 64.2
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.7e-89 333.6 302 58.9
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 5.0e-89 332.0 325 57.5
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 1.9e-88 330.1 253 66.8
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.3e-88 329.3 305 55.4
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.3e-88 329.3 301 58.5
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 4.3e-88 328.9 293 58.7
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 5.6e-88 328.6 258 64.7
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 5.6e-88 328.6 307 56.4
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 7.3e-88 328.2 331 55.9
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.2e-87 327.4 258 64.7
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.2e-87 327.4 308 56.8
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-87 327.0 258 64.3
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.8e-87 326.2 304 57.2
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.6e-87 325.9 310 56.1
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 6.2e-87 325.1 282 59.2
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 1.4e-86 323.9 331 56.5
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 1.8e-86 323.6 275 64.4
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 3.1e-86 322.8 298 58.1
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 6.8e-86 321.6 325 53.8
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.5e-85 320.5 289 59.9
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.2e-84 316.6 279 60.2
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 2.9e-84 316.2 305 54.1
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.1e-83 314.3 286 57.3
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 1.1e-83 314.3 288 57.6
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 3.2e-83 312.8 255 60.4
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 2.7e-82 309.7 332 53.6
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.0e-81 307.8 293 56.0
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.0e-81 307.8 291 54.6
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 2.3e-81 306.6 251 62.2
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 3.0e-81 306.2 321 53.0
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 3.9e-81 305.8 263 57.0
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 6.6e-81 305.1 278 58.3
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.5e-80 303.1 291 55.0
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 5.6e-80 302.0 298 53.0
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 2.8e-79 299.7 321 49.8
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 1.4e-78 297.4 285 53.7
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.8e-78 297.0 321 50.8
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 2.3e-78 296.6 322 49.1
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 6.8e-78 295.0 253 59.3
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 8.9e-78 294.7 317 50.5
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 8.9e-78 294.7 262 56.1
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 1.2e-77 294.3 324 50.0
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 2.0e-77 293.5 321 51.1
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 3.4e-77 292.7 273 55.7
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 9.9e-77 291.2 321 50.5
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 1.2e-74 284.3 295 52.5
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 2.1e-74 283.5 242 61.6
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.0e-73 281.2 321 47.0
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 5.1e-73 278.9 252 56.0
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.5e-72 277.3 249 55.4
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 3.3e-72 276.2 290 52.4
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 5.8e-69 265.4 249 57.4
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 1.7e-68 263.8 292 47.3
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 4.9e-68 262.3 320 45.6
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 1.0e-65 254.6 158 77.2
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 5.3e-62 242.3 159 71.7
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 6.9e-62 241.9 218 56.9
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 3.2e-59 233.0 189 59.3
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.6e-58 230.7 221 52.9
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.8e-55 219.9 135 83.0
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 3.6e-55 219.5 221 53.8
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.8e-52 209.5 150 66.7
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 2.4e-51 206.8 285 47.0
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 1.2e-50 204.5 229 50.2
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 1.8e-49 200.7 237 49.4
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.7e-44 184.1 197 50.3
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.8e-44 183.0 213 46.9
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 1.3e-41 174.5 255 39.2
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 3.2e-35 153.3 128 68.0
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 3.2e-35 153.3 185 45.4
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 5.1e-33 146.0 88 79.5
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 7.2e-27 125.6 87 72.4
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.9e-26 122.1 76 77.6
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 2.2e-23 114.0 75 72.0
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 1.4e-22 111.3 79 69.6
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 1.3e-20 104.8 75 65.3
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 8.5e-20 102.1 56 87.5
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 2.7e-18 97.1 123 39.0
ClCG09G013950 Citrullus lanatus HOM05D003948 ORTHO05D149678 3.7e-07 60.1 110 38.2


User provided reference genes

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