Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 3.8e-154 548.1 276 100.0
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 4.2e-129 464.9 283 83.0
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 1.1e-124 450.3 282 80.9
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 1.8e-124 449.5 276 79.0
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 3.7e-101 372.1 240 76.7
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 3.2e-100 369.0 236 75.8
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 6.6e-98 361.3 215 78.6
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 8.6e-98 360.9 229 75.5
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 1.1e-97 360.5 224 76.8
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 1.5e-97 360.1 216 77.3
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 1.9e-97 359.8 238 73.5
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.3e-97 359.0 216 79.2
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 4.3e-97 358.6 215 79.1
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 5.6e-97 358.2 221 76.0
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 1.2e-96 357.1 216 78.7
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 1.2e-96 357.1 213 78.4
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.6e-96 356.7 214 79.4
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 1.6e-96 356.7 213 78.4
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 3.6e-96 355.5 214 78.5
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 8.1e-96 354.4 215 78.1
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 8.1e-96 354.4 214 79.4
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 1.1e-95 354.0 214 77.6
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.1e-95 354.0 217 77.4
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 8.9e-95 350.9 221 75.6
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.2e-94 350.5 228 74.6
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 1.2e-94 350.5 234 73.5
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 3.4e-94 349.0 208 78.4
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 4.4e-94 348.6 228 75.0
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 4.4e-94 348.6 217 74.7
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.4e-94 348.6 211 77.7
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.8e-94 348.2 237 72.6
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 7.5e-94 347.8 228 75.0
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 2.2e-93 346.3 234 71.8
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.2e-93 346.3 227 74.0
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.7e-93 345.5 240 71.2
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 6.4e-93 344.7 264 67.8
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 8.3e-93 344.4 237 71.3
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 8.3e-93 344.4 264 67.4
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.1e-92 344.0 227 73.6
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.4e-92 343.6 212 76.9
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.9e-92 343.2 214 75.2
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 2.4e-92 342.8 234 73.1
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 2.4e-92 342.8 218 75.7
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 2.4e-92 342.8 214 76.6
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 2.4e-92 342.8 215 75.8
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 3.2e-92 342.4 215 75.3
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 9.2e-92 340.9 230 73.5
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.2e-91 340.5 240 71.2
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.1e-91 339.7 238 71.4
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 2.1e-91 339.7 213 75.6
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.1e-91 339.7 237 71.7
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 3.5e-91 339.0 229 73.8
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 4.6e-91 338.6 232 72.8
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 4.6e-91 338.6 216 73.1
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 6.0e-91 338.2 236 72.9
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 6.0e-91 338.2 236 72.9
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.0e-90 337.4 236 72.5
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.0e-90 337.4 236 72.5
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 1.0e-90 337.4 223 74.0
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 1.3e-90 337.0 229 73.8
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 1.3e-90 337.0 229 73.8
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 1.3e-90 337.0 236 70.3
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.7e-90 336.7 236 72.5
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 2.3e-90 336.3 215 74.0
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 3.9e-90 335.5 215 74.4
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 6.6e-90 334.7 229 73.4
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 1.1e-89 334.0 215 74.0
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 9.5e-89 330.9 211 73.9
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.2e-88 330.5 210 75.7
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 6.2e-88 328.2 256 64.1
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.4e-87 327.0 211 75.8
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 2.4e-87 326.2 214 72.4
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.4e-87 326.2 211 74.9
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.4e-87 326.2 211 74.9
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 4.0e-87 325.5 217 70.0
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 5.2e-87 325.1 228 69.3
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 2.0e-86 323.2 217 69.1
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 2.6e-86 322.8 215 72.1
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 3.4e-86 322.4 230 68.7
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 7.6e-86 321.2 219 71.7
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 3.8e-85 318.9 238 67.6
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 8.4e-85 317.8 213 71.4
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 1.1e-84 317.4 210 71.4
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 2.4e-84 316.2 214 71.5
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 4.1e-84 315.5 236 69.1
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 4.1e-84 315.5 236 69.1
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 4.1e-84 315.5 211 72.0
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 7.1e-84 314.7 239 68.2
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 7.1e-84 314.7 211 72.0
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 4.6e-83 312.0 228 68.9
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 6.0e-83 311.6 208 72.1
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 1.0e-82 310.8 211 72.0
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.3e-82 310.5 220 69.1
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 1.3e-82 310.5 222 67.1
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 2.3e-82 309.7 228 69.3
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.3e-82 309.7 216 68.5
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 6.6e-82 308.1 234 68.4
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 1.9e-81 306.6 228 68.4
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.9e-81 306.6 211 71.6
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.3e-81 305.8 241 64.3
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 3.3e-81 305.8 213 69.5
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 4.3e-81 305.4 214 70.1
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 4.3e-81 305.4 213 69.0
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 5.6e-81 305.1 213 69.5
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 9.6e-81 304.3 216 67.6
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 9.6e-81 304.3 237 65.8
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.1e-80 303.1 241 63.9
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 2.8e-80 302.8 210 69.0
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 3.6e-80 302.4 208 69.2
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 3.6e-80 302.4 208 71.2
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 6.2e-80 301.6 220 66.4
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 8.1e-80 301.2 228 64.9
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 1.4e-79 300.4 219 67.6
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.4e-79 300.4 228 64.5
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 2.4e-79 299.7 211 68.2
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 2.4e-79 299.7 218 65.6
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 5.2e-79 298.5 215 67.0
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 5.2e-79 298.5 211 68.7
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 6.9e-79 298.1 215 66.5
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 6.9e-79 298.1 215 66.5
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 6.9e-79 298.1 229 66.4
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 6.9e-79 298.1 225 66.7
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 6.9e-79 298.1 221 63.8
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 6.9e-79 298.1 223 64.6
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 1.2e-78 297.4 220 65.5
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.2e-78 297.4 222 64.4
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.5e-78 297.0 215 66.0
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.5e-78 297.0 215 66.0
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.5e-78 297.0 215 66.0
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 2.0e-78 296.6 214 67.3
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 2.0e-78 296.6 175 79.4
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 2.6e-78 296.2 219 66.2
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 4.4e-78 295.4 220 67.7
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 2.2e-77 293.1 210 68.1
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 1.1e-76 290.8 210 67.6
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 2.3e-74 283.1 192 71.9
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.9e-74 282.3 178 75.3
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 1.9e-73 280.0 210 66.2
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 9.6e-73 277.7 221 61.5
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 3.6e-72 275.8 224 63.4
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 3.4e-70 269.2 169 74.0
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 2.8e-64 249.6 216 59.7
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 4.8e-64 248.8 198 64.6
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.5e-62 243.8 267 53.6
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.0e-62 243.4 215 59.1
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 2.1e-59 233.4 199 59.8
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 4.6e-59 232.3 217 54.4
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 3.0e-58 229.6 218 55.5
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 2.8e-56 223.0 137 78.8
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 8.2e-56 221.5 137 78.1
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.4e-55 220.7 217 54.4
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 4.2e-52 209.1 134 76.9
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 4.1e-47 192.6 214 47.7
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 4.1e-47 192.6 210 47.6
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.5e-41 174.1 167 52.1
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 3.8e-37 159.5 177 51.4
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 2.5e-36 156.8 169 50.9
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.3e-26 123.6 78 76.9
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 2.6e-25 120.2 77 68.8
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.7e-16 89.7 64 59.4
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 2.4e-15 87.0 89 49.4
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 5.2e-10 69.3 71 47.9
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 1.5e-09 67.8 44 77.3
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 7.5e-09 65.5 64 48.4
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 2.2e-08 63.9 75 52.0
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 4.8e-08 62.8 73 47.9
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 5.4e-07 59.3 42 66.7


User provided reference genes

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