Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 1.9e-136 489.2 251 100.0
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 1.5e-109 399.8 222 89.2
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 2.2e-108 396.0 222 88.3
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 4.7e-103 378.3 228 85.1
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.6e-87 326.6 214 74.3
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 2.1e-87 326.2 214 74.3
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 2.1e-87 326.2 214 74.3
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 1.1e-86 323.9 217 69.1
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 1.8e-86 323.2 217 72.4
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 9.0e-86 320.9 213 71.8
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 1.2e-85 320.5 239 68.6
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 3.4e-85 318.9 214 72.0
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 7.6e-85 317.8 220 70.0
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 7.6e-85 317.8 223 67.7
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 1.3e-84 317.0 220 67.7
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 1.7e-84 316.6 225 67.1
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 2.2e-84 316.2 219 68.9
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 2.9e-84 315.8 214 69.6
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 4.9e-84 315.1 214 71.0
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 4.2e-83 312.0 217 68.2
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 5.4e-83 311.6 219 69.9
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 5.4e-83 311.6 222 68.0
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 7.1e-83 311.2 219 68.0
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 7.1e-83 311.2 219 67.6
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 9.3e-83 310.8 219 69.9
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 2.1e-82 309.7 221 69.2
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.1e-82 309.7 213 69.0
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 4.6e-82 308.5 214 69.6
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 6.0e-82 308.1 209 70.3
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 6.0e-82 308.1 219 68.9
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 7.9e-82 307.8 223 65.9
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 1.8e-81 306.6 219 68.5
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 1.8e-81 306.6 219 68.5
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 1.8e-81 306.6 224 67.9
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 1.8e-81 306.6 219 67.6
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 2.3e-81 306.2 217 67.3
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 3.9e-81 305.4 242 62.0
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 3.9e-81 305.4 207 72.0
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 3.9e-81 305.4 220 66.8
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 5.1e-81 305.1 213 68.5
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 5.1e-81 305.1 220 65.5
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 5.1e-81 305.1 215 68.8
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 6.7e-81 304.7 219 68.5
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 1.9e-80 303.1 213 66.7
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 2.5e-80 302.8 219 66.7
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 3.3e-80 302.4 222 64.4
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 9.6e-80 300.8 219 66.7
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 1.3e-79 300.4 219 67.1
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.3e-79 300.4 222 65.3
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 1.3e-79 300.4 222 63.5
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.6e-79 300.1 222 64.0
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 2.1e-79 299.7 218 66.5
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.1e-79 299.7 226 64.6
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 4.8e-79 298.5 220 67.3
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 8.1e-79 297.7 223 65.9
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 1.4e-78 297.0 214 65.0
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 1.4e-78 297.0 228 62.3
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 1.8e-78 296.6 208 67.8
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 1.8e-78 296.6 214 65.0
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 4.0e-78 295.4 224 63.8
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 4.0e-78 295.4 224 63.8
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 5.3e-78 295.0 218 65.6
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 5.3e-78 295.0 222 62.6
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 9.0e-78 294.3 222 64.4
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.6e-77 292.7 214 65.0
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 2.6e-77 292.7 216 66.2
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 2.6e-77 292.7 222 63.1
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 3.4e-77 292.4 213 65.3
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 3.4e-77 292.4 250 59.2
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 3.4e-77 292.4 222 62.6
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 7.6e-77 291.2 216 63.4
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 7.6e-77 291.2 225 62.7
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 1.0e-76 290.8 229 64.6
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 2.2e-76 289.7 222 62.2
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 2.2e-76 289.7 225 64.9
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 3.8e-76 288.9 213 62.9
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 6.5e-76 288.1 205 67.3
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 8.4e-76 287.7 208 67.3
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 8.4e-76 287.7 205 66.8
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 1.1e-75 287.3 208 65.9
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 2.5e-75 286.2 212 62.3
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.2e-74 283.9 222 60.8
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 1.6e-74 283.5 224 61.6
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 3.5e-74 282.3 223 61.0
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 4.6e-74 282.0 207 68.1
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 5.1e-73 278.5 204 64.2
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 5.7e-72 275.0 203 64.0
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 9.6e-72 274.2 212 63.7
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.6e-71 273.5 199 66.8
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 1.6e-71 273.5 201 67.7
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.6e-71 273.5 212 63.7
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.7e-71 272.3 291 48.8
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 1.4e-70 270.4 207 62.3
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 5.3e-70 268.5 213 59.6
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 5.3e-70 268.5 212 61.3
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 9.0e-70 267.7 221 62.4
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 1.5e-69 266.9 203 62.1
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 1.5e-69 266.9 218 60.6
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.3e-68 263.8 203 62.1
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 6.5e-68 261.5 203 60.1
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 1.1e-67 260.8 221 61.5
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 7.2e-67 258.1 185 67.6
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 9.3e-67 257.7 201 62.2
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 9.3e-67 257.7 201 62.2
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 9.3e-67 257.7 169 72.2
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 1.6e-66 256.9 207 60.4
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 3.5e-66 255.8 191 61.8
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 3.5e-66 255.8 204 62.3
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 6.1e-66 255.0 197 62.9
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.8e-65 253.4 168 70.2
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 2.3e-65 253.1 215 57.7
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 6.7e-65 251.5 211 60.2
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 1.9e-64 250.0 179 68.2
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 4.2e-59 232.3 164 69.5
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 6.1e-58 228.4 209 55.5
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 7.9e-58 228.0 215 52.1
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 1.0e-57 227.6 193 60.6
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 1.4e-57 227.3 149 69.8
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 2.3e-57 226.5 215 56.3
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 8.8e-57 224.6 164 69.5
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 2.5e-56 223.0 164 65.9
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 4.3e-56 222.2 215 51.2
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 9.7e-56 221.1 148 68.9
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 2.2e-55 219.9 168 61.9
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 1.1e-54 217.6 221 54.8
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 5.0e-52 208.8 202 52.5
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 4.2e-51 205.7 216 48.1
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 5.5e-51 205.3 212 46.7
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 5.5e-51 205.3 212 48.6
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 3.6e-50 202.6 210 50.0
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 4.7e-50 202.2 217 50.2
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 6.1e-50 201.8 220 46.4
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 2.6e-48 196.4 222 49.5
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 4.4e-48 195.7 221 50.7
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 8.5e-44 181.4 155 54.8
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 5.2e-41 172.2 216 40.7
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 1.8e-38 163.7 220 39.5
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 3.1e-38 162.9 157 52.2
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 9.1e-38 161.4 203 43.8
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 2.7e-37 159.8 134 63.4
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 5.9e-37 158.7 214 44.4
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 1.0e-36 157.9 182 44.0
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 1.1e-35 154.5 212 40.1
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 3.2e-35 152.9 95 72.6
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.7e-34 149.1 124 55.6
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 2.2e-31 140.2 100 70.0
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 8.5e-28 128.3 214 36.9
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 7.2e-27 125.2 214 36.0
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.2e-24 117.9 192 40.1
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 5.7e-24 115.5 129 46.5
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 1.3e-23 114.4 88 62.5
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 1.6e-21 107.5 91 59.3
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.9e-20 103.2 96 56.2
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 9.5e-19 98.2 85 63.5
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.4e-14 84.3 68 60.3
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 3.5e-13 79.7 219 32.4
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 1.1e-06 58.2 46 63.0


User provided reference genes

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