Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.7e-244 849.0 442 100.0
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 9.8e-237 823.2 442 97.1
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.9e-236 821.6 442 96.2
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 2.5e-224 781.9 442 92.8
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 1.3e-220 769.6 442 91.0
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 2.7e-210 735.3 440 86.4
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 3.0e-209 731.9 440 86.1
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.6e-207 726.1 441 86.2
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 8.1e-207 723.8 441 86.2
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 4.0e-206 721.5 445 85.4
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 4.0e-206 721.5 445 84.0
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 1.5e-205 719.5 440 84.1
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 2.6e-205 718.8 440 85.7
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 3.4e-205 718.4 442 84.4
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 3.4e-205 718.4 445 84.5
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 5.8e-205 717.6 442 84.6
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 9.9e-205 716.8 445 84.0
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 2.2e-204 715.7 444 83.8
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 6.4e-204 714.1 443 84.9
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 6.4e-204 714.1 442 83.9
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 2.4e-203 712.2 445 83.6
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.4e-203 712.2 440 84.5
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 5.4e-203 711.1 445 83.1
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 9.3e-203 710.3 440 84.3
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.2e-202 709.9 441 83.9
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 1.6e-202 709.5 441 84.1
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.1e-202 709.1 440 83.9
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 2.7e-202 708.8 445 82.2
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.6e-202 708.0 440 84.3
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 4.6e-202 708.0 440 84.1
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 6.0e-202 707.6 440 83.0
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 7.8e-202 707.2 443 84.0
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.7e-201 706.1 442 83.3
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.7e-201 706.1 447 83.0
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 8.7e-201 703.7 442 82.8
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 1.9e-200 702.6 440 82.5
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 1.9e-200 702.6 440 82.5
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 5.6e-200 701.0 441 83.0
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 1.6e-199 699.5 440 82.7
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.6e-199 699.5 446 82.5
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 1.1e-198 696.8 439 81.1
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 1.8e-198 696.0 442 81.2
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 4.0e-198 694.9 440 81.4
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 5.3e-198 694.5 439 81.5
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 2.0e-197 692.6 444 81.5
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 4.5e-197 691.4 444 82.2
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 4.5e-197 691.4 443 81.7
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 5.8e-197 691.0 442 80.5
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 9.9e-197 690.3 441 82.5
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 9.9e-197 690.3 441 82.1
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 9.9e-197 690.3 442 82.1
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.3e-196 689.9 441 81.6
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 1.7e-196 689.5 443 82.4
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.7e-196 689.5 441 81.0
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 2.2e-196 689.1 439 82.2
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 4.9e-196 688.0 440 80.9
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 8.4e-196 687.2 440 81.6
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.9e-195 686.0 401 85.3
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.4e-195 685.6 401 85.3
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 4.2e-195 684.9 443 80.8
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 4.2e-195 684.9 440 80.9
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 5.4e-195 684.5 443 81.0
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.2e-194 683.3 443 81.7
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 1.6e-194 682.9 441 81.6
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 2.1e-194 682.6 443 81.5
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 2.1e-194 682.6 443 81.5
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 2.1e-194 682.6 440 79.8
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 2.1e-194 682.6 445 81.3
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 2.1e-194 682.6 444 81.5
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 4.6e-194 681.4 443 80.8
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 6.0e-194 681.0 440 81.1
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 7.9e-194 680.6 444 80.9
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.0e-193 680.2 445 81.6
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.3e-193 679.9 440 81.1
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.8e-193 679.5 441 80.3
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 3.0e-193 678.7 442 79.9
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 5.1e-193 677.9 440 81.1
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 5.1e-193 677.9 439 80.2
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 8.7e-193 677.2 438 79.5
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 1.9e-192 676.0 442 80.5
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 2.5e-192 675.6 442 81.0
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 2.5e-192 675.6 424 83.5
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 4.3e-192 674.9 440 80.0
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 9.6e-192 673.7 451 79.8
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 9.6e-192 673.7 440 79.8
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.3e-191 673.3 442 79.0
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 1.3e-191 673.3 442 80.8
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 1.3e-191 673.3 439 81.3
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 1.6e-191 672.9 443 80.6
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 3.7e-191 671.8 441 79.8
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 1.4e-190 669.8 443 80.4
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 4.0e-190 668.3 442 80.1
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 9.0e-190 667.2 446 80.7
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 1.2e-189 666.8 447 79.9
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 1.2e-189 666.8 447 79.9
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 1.5e-189 666.4 447 80.1
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 4.5e-189 664.8 446 80.5
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 5.8e-189 664.5 418 82.3
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 5.8e-189 664.5 418 82.3
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 2.9e-188 662.1 443 80.8
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 1.4e-187 659.8 440 78.2
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 2.1e-186 656.0 414 81.6
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 2.7e-186 655.6 446 78.3
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 7.9e-186 654.1 440 77.7
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 3.7e-183 645.2 435 76.6
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 6.2e-183 644.4 424 79.7
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.4e-182 642.5 400 79.5
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 5.3e-182 641.3 378 83.6
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.6e-181 639.0 442 77.6
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 3.4e-181 638.6 493 69.4
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 4.5e-181 638.3 432 75.2
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 2.9e-180 635.6 384 82.3
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.9e-180 635.6 428 76.2
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 3.8e-180 635.2 476 71.0
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.1e-179 633.6 390 83.3
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 2.7e-178 629.0 439 74.9
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.8e-177 626.3 482 70.5
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 7.4e-176 620.9 447 75.8
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 5.9e-173 611.3 440 74.8
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 3.0e-169 599.0 380 82.1
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.1e-163 580.5 442 71.7
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.5e-160 570.1 363 83.2
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 6.3e-159 564.7 368 81.2
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 8.2e-159 564.3 392 78.3
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 3.0e-153 545.8 374 71.4
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 8.2e-151 537.7 371 68.7
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 3.1e-150 535.8 305 88.9
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 9.1e-150 534.3 376 69.7
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.6e-146 523.5 365 69.0
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.1e-142 510.8 366 67.2
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 1.1e-142 510.8 370 68.1
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 7.0e-142 508.1 382 66.5
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 7.0e-142 508.1 374 66.3
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 7.0e-142 508.1 361 71.2
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 9.1e-142 507.7 382 66.5
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 1.2e-141 507.3 402 64.9
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.2e-141 507.3 392 63.3
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.7e-140 503.4 431 61.3
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.2e-136 490.7 361 67.0
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.8e-135 486.1 374 62.8
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.1e-131 474.2 374 62.0
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.1e-131 474.2 317 77.0
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 4.4e-128 462.2 360 63.1
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 3.9e-116 422.5 365 61.4
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 3.0e-100 369.8 359 56.0
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.7e-92 344.0 302 60.3
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 3.3e-83 313.2 215 73.5
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 1.5e-72 277.7 187 79.7
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.9e-68 263.1 329 43.5
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.7e-61 240.4 139 89.2
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.5e-59 234.6 198 60.6
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 3.7e-58 229.9 123 87.0
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 3.8e-55 219.9 160 68.1
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.7e-39 167.9 162 54.3
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 5.5e-38 162.9 119 68.9
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.0e-36 158.7 111 77.5
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 6.3e-34 149.4 81 91.4
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 7.2e-30 136.0 80 83.8
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 4.7e-29 133.3 112 58.9
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.7e-26 124.8 80 71.2
ClCG07G011950 Citrullus lanatus HOM05D002468 ORTHO05D005371 6.1e-21 106.3 64 98.4
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 8.8e-20 102.4 74 60.8
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 8.3e-18 95.9 51 82.4
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.1e-14 85.5 94 50.0
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 3.0e-07 60.8 35 80.0


User provided reference genes

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