Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 0.0e+00 1935.6 983 100.0
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 0.0e+00 1520.8 1022 79.1
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 0.0e+00 1515.0 986 79.9
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 5.6e-216 755.4 1033 46.0
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 9.5e-216 754.6 998 47.3
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 1.2e-210 737.6 1033 45.2
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 5.1e-209 732.3 1026 45.2
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 2.7e-194 683.3 1025 44.0
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 1.1e-192 677.9 1022 43.8
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 2.1e-186 657.1 1036 42.3
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 3.5e-186 656.4 1023 42.7
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 3.9e-185 652.9 1022 42.4
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 2.0e-181 640.6 1022 42.4
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 1.4e-179 634.4 1016 42.3
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 9.3e-179 631.7 1025 41.6
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 1.2e-178 631.3 1027 42.0
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 1.3e-177 627.9 1026 41.9
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.6e-175 620.9 1030 41.4
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.8e-175 620.2 1030 41.7
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.7e-175 619.8 1033 41.4
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 1.1e-174 618.2 1077 39.4
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 6.5e-172 609.0 1028 41.8
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 1.1e-171 608.2 1035 40.7
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 1.2e-170 604.7 1023 41.5
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 9.4e-163 578.6 1014 40.2
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 5.9e-157 559.3 1031 38.1
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 5.9e-157 559.3 897 42.7
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 6.5e-156 555.8 1031 37.8
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 3.3e-152 543.5 1028 38.0
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.1e-150 537.0 1009 39.2
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 7.0e-150 535.8 773 44.4
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 4.2e-147 526.6 1031 36.9
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.1e-146 524.2 769 43.4
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 4.7e-146 523.1 1007 37.8
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 8.2e-143 512.3 1024 37.5
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 1.6e-141 508.1 1067 35.9
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 1.6e-141 508.1 1024 36.8
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 6.5e-140 502.7 1022 37.6
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 7.2e-139 499.2 881 39.0
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 2.7e-138 497.3 1071 36.3
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 5.2e-137 493.0 1036 37.7
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 6.3e-135 486.1 1018 37.0
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 2.0e-133 481.1 1016 36.0
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 5.9e-133 479.6 1020 36.3
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 2.5e-131 474.2 1024 36.5
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 5.2e-129 466.5 1016 35.6
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 5.2e-129 466.5 1019 34.9
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 6.8e-129 466.1 1019 35.4
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 1.2e-128 465.3 1018 36.1
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 8.3e-127 459.1 1036 35.0
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 7.7e-125 452.6 1030 34.5
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 7.7e-125 452.6 1034 35.9
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 1.3e-124 451.8 1023 35.0
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 5.0e-124 449.9 1021 35.3
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 4.7e-122 443.4 1026 35.1
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 6.1e-122 443.0 1030 35.0
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 1.8e-121 441.4 1021 35.9
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 4.0e-121 440.3 1028 34.4
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 6.8e-121 439.5 1027 35.7
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 1.5e-120 438.3 931 35.7
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.5e-120 438.3 1005 35.4
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 2.0e-120 438.0 1023 34.2
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 4.4e-120 436.8 1043 34.6
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 4.4e-120 436.8 803 38.9
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 3.7e-119 433.7 1033 34.3
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 8.3e-119 432.6 984 36.5
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 1.8e-118 431.4 1017 35.1
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 9.2e-118 429.1 1017 35.0
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 7.8e-117 426.0 1039 33.8
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 1.3e-116 425.2 980 34.3
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.7e-116 424.9 1001 34.8
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 1.9e-115 421.4 1016 34.3
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 3.3e-115 420.6 1021 34.2
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 3.3e-115 420.6 1001 34.9
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 7.3e-115 419.5 1031 34.0
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 2.3e-113 414.5 1006 34.5
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 3.1e-113 414.1 1021 34.1
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 3.4e-112 410.6 1023 34.9
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 1.3e-111 408.7 411 57.7
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 2.9e-111 407.5 1021 34.1
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 2.9e-111 407.5 1021 34.1
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 3.2e-110 404.1 1022 35.1
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 5.4e-110 403.3 1025 33.4
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 4.6e-109 400.2 1020 32.9
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 4.6e-109 400.2 1023 33.0
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 6.0e-109 399.8 1021 32.7
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 6.0e-109 399.8 1017 33.5
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 1.3e-108 398.7 1029 33.0
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 3.0e-108 397.5 820 35.9
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 4.3e-107 393.7 1018 34.2
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 3.2e-102 377.5 1002 33.6
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 6.0e-101 373.2 475 46.9
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 6.0e-101 373.2 881 34.5
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 3.7e-95 354.0 956 33.2
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 3.2e-94 350.9 868 33.4
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.1e-86 325.9 629 36.6
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.1e-83 315.8 996 30.8
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 4.3e-83 313.9 1079 29.9
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 2.8e-82 311.2 628 35.5
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 1.2e-80 305.8 861 31.6
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 1.6e-77 295.4 1034 29.6
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.8e-73 282.0 979 28.7
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 3.8e-71 274.2 1034 28.7
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 1.2e-69 269.2 666 33.5
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 5.8e-64 250.4 330 44.8
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 9.3e-54 216.5 324 44.8
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 4.6e-53 214.2 468 36.1
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 2.5e-46 191.8 597 30.5
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 9.4e-46 189.9 485 33.8
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 6.1e-45 187.2 364 39.3
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 8.8e-44 183.3 1055 25.0
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.8e-41 175.6 936 24.7
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 9.1e-41 173.3 1098 24.0
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.9e-39 168.3 421 33.0
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 2.9e-39 168.3 1039 26.4
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 2.2e-31 142.1 477 31.7
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 5.2e-28 131.0 201 46.3
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 2.0e-27 129.0 284 37.0
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.6e-27 128.6 320 33.4
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 6.8e-20 104.0 161 41.6
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 1.2e-16 93.2 88 64.8
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 1.1e-14 86.7 188 37.8
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 3.7e-10 71.6 83 56.6
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 7.8e-08 63.9 348 24.4
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 4.3e-06 58.2 187 31.0


User provided reference genes

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