Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 4.6e-77 291.6 200 100.0
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 1.5e-46 190.3 204 77.5
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 6.1e-45 184.9 227 72.2
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.3e-44 183.0 219 69.9
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 6.6e-39 164.9 202 69.3
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 2.5e-38 162.9 214 54.7
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 3.3e-38 162.5 205 66.8
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.3e-38 162.5 203 66.0
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 9.5e-38 161.0 199 52.3
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.2e-37 160.6 202 65.8
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.6e-37 160.2 207 51.2
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 2.1e-37 159.8 219 63.5
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 4.7e-37 158.7 205 65.4
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 6.1e-37 158.3 202 57.4
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 6.1e-37 158.3 206 64.6
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 8.0e-37 157.9 217 51.6
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.0e-36 157.5 204 53.4
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 1.0e-36 157.5 229 51.1
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.8e-36 156.8 203 51.7
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 1.8e-36 156.8 199 66.3
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 3.0e-36 156.0 211 58.8
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 4.0e-36 155.6 203 53.2
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 4.0e-36 155.6 205 45.9
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 4.0e-36 155.6 213 45.5
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 6.8e-36 154.8 218 61.5
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 6.8e-36 154.8 202 68.3
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.2e-35 154.1 216 58.3
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.2e-35 154.1 216 58.3
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 1.2e-35 154.1 200 61.5
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 1.2e-35 154.1 200 61.5
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.5e-35 153.7 196 57.1
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 2.6e-35 152.9 206 51.0
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 2.6e-35 152.9 221 62.0
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 2.6e-35 152.9 204 45.1
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 3.4e-35 152.5 204 43.1
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 7.5e-35 151.4 221 58.4
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 7.5e-35 151.4 218 42.7
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 9.8e-35 151.0 206 51.0
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 9.8e-35 151.0 206 51.5
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 1.3e-34 150.6 202 65.3
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.3e-34 150.6 202 55.0
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 1.7e-34 150.2 206 50.5
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 2.2e-34 149.8 216 60.2
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 8.3e-34 147.9 205 64.9
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 8.3e-34 147.9 209 44.0
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 1.4e-33 147.1 194 69.1
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 2.4e-33 146.4 149 56.4
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 2.4e-33 146.4 206 50.0
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 5.4e-33 145.2 209 55.5
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 5.4e-33 145.2 195 53.8
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 7.0e-33 144.8 190 63.7
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 7.0e-33 144.8 226 49.1
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.2e-32 144.1 197 48.2
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 1.2e-32 144.1 199 64.3
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 2.0e-32 143.3 195 63.6
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.7e-32 142.9 194 49.5
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 2.7e-32 142.9 191 61.8
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 3.5e-32 142.5 190 60.5
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 3.5e-32 142.5 210 45.7
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 4.6e-32 142.1 193 50.8
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 4.6e-32 142.1 205 63.9
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 7.8e-32 141.4 248 55.2
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 1.7e-31 140.2 200 61.0
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.7e-31 140.2 198 61.6
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 2.3e-31 139.8 224 45.1
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 3.0e-31 139.4 152 57.2
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 8.6e-31 137.9 194 50.5
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 8.6e-31 137.9 205 48.3
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 1.1e-30 137.5 206 59.7
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.5e-30 137.1 196 62.2
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 1.5e-30 137.1 240 55.4
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 2.5e-30 136.3 198 50.0
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.3e-30 136.0 193 61.1
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.3e-30 136.0 192 53.1
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.3e-30 136.0 196 46.9
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 5.6e-30 135.2 192 59.4
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 7.3e-30 134.8 203 60.6
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 7.3e-30 134.8 200 56.5
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 9.5e-30 134.4 199 66.8
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.2e-29 134.0 190 58.9
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 1.6e-29 133.7 201 50.2
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 1.6e-29 133.7 203 59.6
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 1.6e-29 133.7 218 53.2
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 1.6e-29 133.7 200 49.5
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-29 133.3 205 62.0
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 2.1e-29 133.3 205 62.0
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 2.1e-29 133.3 188 51.6
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 2.1e-29 133.3 213 51.6
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.1e-29 133.3 185 49.2
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 2.8e-29 132.9 192 57.8
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.8e-29 132.9 201 49.8
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 8.0e-29 131.3 193 40.4
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.1e-28 131.0 196 63.3
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.4e-28 130.6 206 62.6
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 1.4e-28 130.6 193 42.0
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.8e-28 130.2 222 49.1
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.8e-28 130.2 192 57.3
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 3.1e-28 129.4 192 58.9
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 3.1e-28 129.4 192 57.3
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 5.2e-28 128.6 197 56.3
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 5.2e-28 128.6 197 57.9
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 6.8e-28 128.3 204 41.7
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 6.8e-28 128.3 199 49.7
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 8.9e-28 127.9 192 40.1
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.6e-27 126.3 219 41.6
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 5.8e-27 125.2 205 53.7
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 5.8e-27 125.2 211 49.8
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 7.5e-27 124.8 240 50.0
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 2.2e-26 123.2 236 50.8
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 4.9e-26 122.1 147 57.1
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 4.9e-26 122.1 215 40.9
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 8.3e-26 121.3 216 53.2
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.4e-25 120.6 182 54.4
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.4e-25 120.6 211 46.0
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 1.9e-25 120.2 206 54.4
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 3.2e-25 119.4 210 54.3
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 4.1e-25 119.0 201 49.8
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 4.1e-25 119.0 218 57.3
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 5.4e-25 118.6 236 47.9
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 5.4e-25 118.6 216 39.8
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 7.0e-25 118.2 211 47.9
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 9.2e-25 117.9 199 42.7
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 1.2e-24 117.5 194 58.2
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.6e-24 117.1 202 49.5
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 2.7e-24 116.3 198 54.5
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 4.6e-24 115.5 216 45.8
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 4.6e-24 115.5 197 57.4
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 4.6e-24 115.5 191 55.0
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 6.0e-24 115.2 194 46.9
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 7.8e-24 114.8 191 57.6
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 1.3e-23 114.0 187 38.0
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 1.7e-23 113.6 205 50.7
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.9e-23 112.5 203 51.7
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 5.0e-23 112.1 193 52.8
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 8.6e-23 111.3 195 53.8
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 1.5e-22 110.5 178 37.1
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.9e-22 110.2 189 50.8
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 4.3e-22 109.0 188 36.7
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 4.3e-22 109.0 188 36.7
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 7.3e-22 108.2 183 39.9
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 7.3e-22 108.2 187 42.2
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 9.5e-22 107.8 184 40.2
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 6.2e-21 105.1 194 44.3
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-20 104.0 188 36.2
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 4.0e-20 102.4 194 45.4
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-18 97.4 196 44.9
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 2.9e-18 96.3 194 43.8
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 4.9e-18 95.5 196 36.2
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 6.4e-18 95.1 182 36.3
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 6.4e-18 95.1 114 48.2
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-17 94.4 189 34.9
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-17 94.4 189 34.9
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 1.1e-17 94.4 189 34.9
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 1.6e-16 90.5 124 48.4
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 3.0e-15 86.3 182 48.4
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 3.0e-15 86.3 182 48.4
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 3.0e-15 86.3 197 31.5
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 5.1e-15 85.5 182 48.4
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 5.1e-15 85.5 182 48.4
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.8e-12 77.0 184 38.6
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.4e-12 76.6 168 40.5
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 6.8e-12 75.1 194 49.0
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 6.8e-12 75.1 127 43.3
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.0e-11 73.6 194 49.0
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 2.6e-11 73.2 148 50.7
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.4e-11 72.8 237 32.1
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.8e-10 69.3 194 47.9
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 8.4e-10 68.2 43 65.1
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 5.4e-09 65.5 82 39.0
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 9.2e-09 64.7 35 77.1
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.5e-08 62.8 215 33.0
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.0e-07 59.7 141 27.0
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 5.1e-07 58.9 141 26.2
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 9.6e-06 54.7 44 47.7


User provided reference genes

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