Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 5.7e-138 494.2 241 100.0
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 4.1e-104 381.7 242 83.1
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 5.6e-93 344.7 233 75.1
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 3.1e-67 259.2 238 57.6
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.0e-67 258.8 257 54.1
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 4.0e-67 258.8 257 54.1
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 3.8e-65 252.3 246 54.5
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 4.9e-65 251.9 248 57.3
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 1.3e-62 243.8 244 54.5
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 1.3e-62 243.8 242 54.1
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 2.5e-61 239.6 250 54.0
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 5.6e-61 238.4 240 52.1
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 5.6e-61 238.4 250 55.6
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 9.6e-61 237.7 250 54.0
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.6e-60 235.7 258 51.6
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 3.6e-60 235.7 235 52.8
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 4.8e-60 235.3 250 55.2
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 4.8e-60 235.3 251 52.2
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.1e-59 232.6 255 50.2
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 5.8e-58 228.4 242 54.1
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 9.9e-58 227.6 251 49.4
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.7e-57 226.9 226 52.7
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 2.2e-57 226.5 247 49.4
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 3.8e-57 225.7 237 51.5
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 4.9e-57 225.3 254 49.6
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 6.4e-57 224.9 241 51.9
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 1.1e-56 224.2 226 52.2
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.4e-56 223.8 232 52.2
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.4e-56 223.0 231 51.5
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 2.4e-56 223.0 242 52.5
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 4.2e-56 222.2 253 49.4
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 5.5e-56 221.9 235 51.5
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 1.2e-55 220.7 234 52.1
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 1.2e-55 220.7 243 51.9
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 1.6e-55 220.3 217 54.4
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 2.1e-55 219.9 250 48.0
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 2.1e-55 219.9 251 49.8
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 3.5e-55 219.2 232 50.9
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 3.5e-55 219.2 241 52.3
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 4.6e-55 218.8 251 46.6
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.0e-54 217.6 232 50.9
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 1.3e-54 217.2 248 49.2
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 1.3e-54 217.2 232 50.9
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 1.8e-54 216.9 254 49.2
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.8e-54 216.9 241 51.0
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.9e-54 215.7 245 50.6
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 5.1e-54 215.3 232 50.4
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 6.7e-54 214.9 231 50.2
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 6.7e-54 214.9 217 51.6
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.1e-53 214.2 255 50.6
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 1.5e-53 213.8 232 50.4
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 1.5e-53 213.8 245 45.7
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 3.3e-53 212.6 231 49.8
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 4.3e-53 212.2 242 48.3
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 4.3e-53 212.2 234 51.7
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 5.6e-53 211.8 237 51.9
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 1.3e-52 210.7 232 51.7
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 1.6e-52 210.3 231 51.5
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 2.1e-52 209.9 255 48.2
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 3.7e-52 209.1 254 48.4
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.1e-51 207.6 218 50.5
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 3.1e-51 206.1 238 47.1
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 3.1e-51 206.1 234 49.6
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.0e-51 205.7 235 47.2
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 4.0e-51 205.7 265 46.4
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 5.3e-51 205.3 214 54.2
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 9.0e-51 204.5 242 48.8
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 9.0e-51 204.5 241 49.0
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.2e-50 204.1 214 53.7
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 1.5e-50 203.8 255 49.8
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 5.8e-50 201.8 210 51.9
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 1.3e-49 200.7 250 44.4
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 2.9e-49 199.5 237 47.3
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 3.8e-49 199.1 243 47.7
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 6.5e-49 198.4 242 48.8
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 1.4e-48 197.2 234 45.3
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.9e-48 196.8 294 42.9
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 1.9e-48 196.8 240 47.1
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 2.5e-48 196.4 225 47.6
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 7.1e-48 194.9 228 51.8
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 2.7e-47 193.0 252 45.6
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 7.9e-47 191.4 246 47.6
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 5.1e-46 188.7 269 41.3
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 5.1e-46 188.7 246 47.6
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 8.7e-46 188.0 229 49.3
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.1e-45 187.6 236 46.2
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 1.9e-45 186.8 247 44.5
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 7.4e-45 184.9 226 49.6
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.8e-44 182.2 247 46.2
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 6.3e-44 181.8 184 51.6
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 8.2e-44 181.4 238 46.2
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.4e-43 180.6 238 42.9
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.4e-43 180.6 238 44.1
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 3.1e-43 179.5 250 42.8
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 3.1e-43 179.5 238 42.9
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 6.9e-43 178.3 241 42.3
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 9.0e-43 177.9 144 59.0
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.2e-42 177.6 347 33.4
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.2e-42 177.6 267 41.6
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 4.5e-42 175.6 256 46.1
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.3e-41 174.1 211 48.3
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.9e-41 172.9 238 44.1
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.1e-40 171.0 248 41.1
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 1.9e-40 170.2 262 41.6
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 3.2e-40 169.5 246 42.3
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 4.2e-40 169.1 262 41.6
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 5.5e-40 168.7 238 41.6
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.7e-39 166.4 130 65.4
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.0e-38 164.5 234 42.3
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.3e-38 164.1 236 42.4
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 1.8e-38 163.7 246 41.5
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 3.9e-38 162.5 239 41.8
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 1.5e-37 160.6 240 40.8
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 9.7e-37 157.9 236 41.9
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 9.7e-37 157.9 236 41.9
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 1.8e-35 153.7 236 41.1
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 5.3e-35 152.1 236 42.8
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 2.0e-34 150.2 210 45.2
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.9e-33 146.4 198 46.5
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 1.9e-32 143.7 178 49.4
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 2.7e-31 139.8 282 35.5
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 3.0e-30 136.3 245 37.1
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.6e-29 133.3 177 46.9
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 4.4e-29 132.5 213 39.0
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 2.2e-28 130.2 117 53.0
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 2.8e-28 129.8 111 53.2
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 2.8e-28 129.8 252 38.5
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 3.4e-26 122.9 181 37.0
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.0e-25 121.3 85 69.4
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 1.4e-24 117.5 219 37.4
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.5e-24 116.7 88 65.9
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 5.5e-24 115.5 168 44.6
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 3.0e-22 109.8 152 44.7
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 2.6e-21 106.7 55 94.5
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 1.7e-20 104.0 108 49.1
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 2.2e-20 103.6 92 54.3
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 5.3e-19 99.0 65 70.8
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 1.3e-17 94.4 83 56.6
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 5.0e-17 92.4 86 55.8
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 2.0e-13 80.5 59 64.4
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 1.3e-12 77.8 70 57.1


User provided reference genes

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