Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.0e-98 363.6 207 100.0
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 4.1e-92 341.7 208 93.3
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 3.6e-80 302.0 205 78.5
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 6.7e-71 271.2 254 71.3
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 1.6e-59 233.4 178 74.7
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 4.1e-52 208.8 179 67.0
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 4.1e-52 208.8 180 68.9
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 3.5e-51 205.7 179 67.0
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 5.9e-51 204.9 180 67.8
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 2.9e-50 202.6 210 59.5
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 2.9e-50 202.6 210 59.0
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.5e-49 200.3 211 58.3
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.5e-49 199.5 211 56.9
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 1.2e-48 197.2 183 64.5
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.0e-48 194.5 213 55.4
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 8.0e-48 194.5 212 55.7
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 2.3e-47 193.0 183 65.6
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.0e-47 192.6 204 57.8
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 3.0e-47 192.6 183 66.1
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.5e-46 190.3 180 65.0
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 2.0e-46 189.9 183 63.4
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 3.4e-46 189.1 222 55.9
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 4.4e-46 188.7 209 56.0
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 7.5e-46 188.0 183 63.4
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 7.5e-46 188.0 179 62.0
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 9.8e-46 187.6 209 55.0
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 9.8e-46 187.6 213 55.9
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 2.2e-45 186.4 208 55.3
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 2.8e-45 186.0 213 54.9
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.8e-45 186.0 180 63.3
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.1e-44 182.6 203 54.7
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.6e-43 180.3 182 60.4
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.6e-43 180.3 180 61.1
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 2.7e-43 179.5 181 60.2
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 7.8e-43 177.9 207 55.6
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.8e-42 175.6 181 59.1
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 8.6e-42 174.5 181 59.1
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 1.5e-41 173.7 185 60.0
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 3.3e-41 172.6 210 53.3
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 3.3e-41 172.6 206 53.4
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.2e-40 170.6 187 59.9
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.2e-40 170.6 187 59.9
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.2e-40 170.6 179 57.0
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.6e-40 170.2 180 58.9
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.6e-40 170.2 180 58.9
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 2.8e-40 169.5 175 63.4
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.7e-40 168.7 180 58.9
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 8.0e-40 167.9 198 55.1
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.0e-39 167.5 276 43.8
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.0e-39 167.5 206 52.4
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 3.0e-39 166.0 180 57.8
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 5.2e-39 165.2 173 60.1
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.9e-39 164.5 180 57.2
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.5e-38 163.7 216 49.1
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.5e-38 163.7 216 49.1
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 7.5e-38 161.4 212 50.0
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 1.3e-37 160.6 227 47.6
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 3.7e-37 159.1 192 52.6
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 3.7e-37 159.1 179 56.4
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 4.9e-37 158.7 202 51.0
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 1.1e-36 157.5 210 50.5
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.4e-36 157.1 184 58.7
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 1.9e-36 156.8 171 59.1
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.9e-36 156.8 202 52.0
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 1.9e-36 156.8 193 62.2
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 5.4e-36 155.2 168 59.5
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 1.2e-35 154.1 180 53.9
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.0e-35 153.3 248 46.8
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.0e-35 153.3 248 46.8
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 6.0e-35 151.8 186 55.4
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 7.8e-35 151.4 179 54.2
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 2.3e-34 149.8 183 55.2
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 3.0e-34 149.4 206 51.9
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 3.0e-34 149.4 186 54.8
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 5.0e-34 148.7 187 56.7
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 5.0e-34 148.7 181 55.8
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 2.5e-33 146.4 186 55.4
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 3.3e-33 146.0 169 56.2
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.6e-32 143.7 124 70.2
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 3.6e-32 142.5 178 52.2
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 3.6e-32 142.5 121 66.9
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.1e-31 141.0 120 69.2
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.1e-31 141.0 120 69.2
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 1.1e-31 141.0 179 53.1
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.4e-31 140.6 120 69.2
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.4e-31 140.6 180 50.0
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.4e-31 140.6 120 68.3
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 1.4e-31 140.6 120 69.2
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 1.8e-31 140.2 120 70.0
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 3.1e-31 139.4 187 50.8
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 5.2e-31 138.7 183 54.1
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 6.8e-31 138.3 182 51.1
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 5.8e-30 135.2 180 52.8
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 9.8e-30 134.4 211 46.0
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 2.9e-29 132.9 267 40.1
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 4.9e-29 132.1 209 47.4
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 6.4e-29 131.7 120 64.2
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 1.9e-28 130.2 207 47.3
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 3.2e-28 129.4 185 51.4
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 4.1e-28 129.0 190 50.0
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 5.4e-28 128.6 109 62.4
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.2e-27 127.5 193 48.7
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 2.7e-27 126.3 176 50.6
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 2.7e-27 126.3 140 56.4
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.0e-26 124.4 177 48.6
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 5.1e-26 122.1 136 55.1
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 1.1e-25 120.9 110 60.0
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 5.6e-25 118.6 234 42.3
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.6e-24 117.1 156 52.6
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 2.8e-24 116.3 99 67.7
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 8.9e-23 111.3 177 45.2
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 1.2e-22 110.9 231 43.7
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 2.0e-22 110.2 119 55.5
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.0e-22 110.2 110 56.4
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 3.4e-22 109.4 117 53.8
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 5.8e-22 108.6 173 46.8
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 5.8e-22 108.6 186 47.3
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.2e-21 106.7 120 58.3
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 3.7e-21 105.9 170 47.1
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 1.9e-20 103.6 271 35.8
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 2.1e-19 100.1 170 46.5
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 2.1e-19 100.1 117 52.1
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 2.7e-19 99.8 176 43.2
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 1.0e-18 97.8 185 41.1
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 6.6e-18 95.1 176 43.2
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 3.3e-17 92.8 115 52.2
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 5.6e-17 92.0 121 52.1
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 7.3e-17 91.7 112 55.4
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 1.6e-16 90.5 169 45.0
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.8e-16 89.7 112 54.5
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 3.6e-16 89.4 111 53.2
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 6.2e-16 88.6 112 54.5
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 1.5e-14 84.0 73 65.8
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 7.6e-14 81.6 67 65.7
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.7e-13 80.5 112 42.9
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.7e-13 80.5 112 42.9
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.7e-13 80.5 112 42.9
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.6e-09 65.5 62 59.7
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.6e-09 65.5 62 59.7
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 4.7e-08 62.4 59 54.2
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 3.1e-07 59.7 88 42.0
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 5.8e-06 55.5 151 31.8
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 9.9e-06 54.7 42 69.0


User provided reference genes

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