Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G011560 Citrullus lanatus HOM05D007126 ORTHO05D008974 7.1e-309 1063.1 561 100.0
CsaV3_4G006650 Cucumis sativus L. HOM05D007126 ORTHO05D008974 3.5e-279 964.5 579 88.6
Sed0013130 Sechium edule HOM05D007126 ORTHO05D008974 1.0e-262 909.8 581 83.6
MELO3C016299.2 Cucumis melo HOM05D007126 ORTHO05D008974 1.3e-249 866.3 535 87.1
CiPaw.11G120500 Carya illinoinensis HOM05D007126 ORTHO05D008974 1.3e-204 716.8 583 66.9
QL02p030251 Quercus lobata HOM05D007126 ORTHO05D008974 2.2e-201 706.1 610 65.6
Prupe.5G121000 Prunus persica HOM05D007126 ORTHO05D008974 4.2e-200 701.8 582 67.0
MD06G1108400 Malus domestica HOM05D007126 ORTHO05D008974 5.1e-198 694.9 583 66.4
GSVIVG01019542001 Vitis vinifera HOM05D007126 ORTHO05D008974 6.3e-196 688.0 581 65.6
Duzib205G0473 Durio zibethinus HOM05D007126 ORTHO05D008974 4.5e-194 681.8 586 64.8
Thecc.03G299000 Theobroma cacao HOM05D007126 ORTHO05D008974 5.9e-194 681.4 593 64.9
Haze_09075 Corylus avellana HOM05D007126 ORTHO05D008974 1.3e-193 680.2 609 62.4
PGR031G2002 Punica granatum HOM05D007126 ORTHO05D008974 6.5e-193 677.9 584 64.7
Manes.01G047820 Manihot esculenta HOM05D007126 ORTHO05D008974 1.4e-192 676.8 588 65.1
CANSAT21G1075 Cannabis sativa HOM05D007126 ORTHO05D008974 1.9e-192 676.4 585 65.0
Gohir.D12G238100 Gossypium hirsutum HOM05D007126 ORTHO05D008974 4.6e-191 671.8 581 65.2
Atru.chr9.1985 Acer truncatum HOM05D007126 ORTHO05D008974 1.0e-190 670.6 590 63.9
Atru.chr9.1971 Acer truncatum HOM05D007126 ORTHO05D008974 1.3e-190 670.2 589 63.8
Gorai.008G255000 Gossypium raimondii HOM05D007126 ORTHO05D008974 1.3e-190 670.2 581 65.2
Gohir.A12G236900 Gossypium hirsutum HOM05D007126 ORTHO05D008974 3.9e-190 668.7 581 64.9
RcHm_v2.0_Chr7g0194681 Rosa chinensis HOM05D007126 ORTHO05D008974 1.4e-187 660.2 573 64.7
Eucgr.D01749 Eucalyptus grandis HOM05D007126 ORTHO05D008974 1.2e-186 657.1 597 63.7
Actinidia22167 Actinidia chinensis HOM05D007126 ORTHO05D008974 3.4e-186 655.6 579 63.9
TWI15G1063 Tripterygium wilfordii HOM05D007126 ORTHO05D008974 1.7e-185 653.3 548 65.3
Hma1.2p1_0440F.1_g153370 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 4.2e-184 648.7 533 66.6
Medtr8g099525 Medicago truncatula HOM05D007126 ORTHO05D008974 4.2e-184 648.7 586 61.6
Glyma.08G023000 Glycine max HOM05D007126 ORTHO05D008974 7.2e-184 647.9 582 61.2
Nitab4.5_0000726g0050 Nicotiana tabacum HOM05D007126 ORTHO05D008974 4.6e-183 645.2 564 63.5
Potri.003G140800 Populus trichocarpa HOM05D007126 ORTHO05D008974 1.4e-182 643.7 588 62.4
Ciclev10019342m.g Citrus clementina HOM05D007126 ORTHO05D008974 1.1e-181 640.6 558 62.4
Lj4g0010714 Lotus japonicus HOM05D007126 ORTHO05D008974 1.5e-181 640.2 586 62.5
PGSC0003DMG400004995 Solanum tuberosum HOM05D007126 ORTHO05D008974 3.3e-181 639.0 536 64.4
Sp2g00310 Schrenkiella parvula HOM05D007126 ORTHO05D008974 4.3e-181 638.6 510 65.9
FvH4_5g04720 Fragaria vesca HOM05D007126 ORTHO05D008974 9.7e-181 637.5 537 66.5
Potri.001G090800 Populus trichocarpa HOM05D007126 ORTHO05D008974 9.7e-181 637.5 570 62.3
BraA09t37117Z Brassica rapa HOM05D007126 ORTHO05D008974 1.3e-180 637.1 507 66.1
CSS0001738 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 1.3e-180 637.1 576 62.2
BolC9t54678H Brassica oleracea HOM05D007126 ORTHO05D008974 2.2e-180 636.3 507 66.1
A09p14710 Brassica napus HOM05D007126 ORTHO05D008974 3.7e-180 635.6 507 65.9
BcaB07g31464 Brassica carinata HOM05D007126 ORTHO05D008974 8.2e-180 634.4 507 65.7
Rhsim02G0244700 Rhododendron simsii HOM05D007126 ORTHO05D008974 8.2e-180 634.4 563 63.1
HanXRQChr17g0534861 Helianthus annuus HOM05D007126 ORTHO05D008974 1.4e-179 633.6 582 61.2
BcaC04g22569 Brassica carinata HOM05D007126 ORTHO05D008974 2.0e-178 629.8 507 65.9
VMungo0251G2926 Vigna mungo HOM05D007126 ORTHO05D008974 4.5e-178 628.6 586 59.0
CSS0007498 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 7.7e-178 627.9 578 61.2
MBI06_g08479_MAGBIO Magnolia biondii HOM05D007126 ORTHO05D008974 6.5e-177 624.8 594 58.6
Migut.A00631 Erythranthe guttata HOM05D007126 ORTHO05D008974 1.1e-176 624.0 498 66.9
Sopen12g024410 Solanum pennellii HOM05D007126 ORTHO05D008974 1.1e-176 624.0 530 63.8
Solyc12g055940.3 Solanum lycopersicum HOM05D007126 ORTHO05D008974 1.9e-176 623.2 547 62.3
CAN.G390.5 Capsicum annuum HOM05D007126 ORTHO05D008974 7.2e-176 621.3 580 60.5
CARHR046500 Cardamine hirsuta HOM05D007126 ORTHO05D008974 7.2e-176 621.3 498 63.9
AT1G64430 Arabidopsis thaliana HOM05D007126 ORTHO05D008974 1.6e-175 620.2 539 61.0
ECA246G3461 Erigeron canadensis HOM05D007126 ORTHO05D008974 1.6e-175 620.2 521 63.7
Hund11386 Selenicereus undatus HOM05D007126 ORTHO05D008974 1.6e-175 620.2 544 62.7
AL2G10420 Arabidopsis lyrata HOM05D007126 ORTHO05D008974 2.1e-175 619.8 539 60.9
Cc08_g16150 Coffea canephora HOM05D007126 ORTHO05D008974 6.1e-175 618.2 461 69.4
C09p17800 Brassica napus HOM05D007126 ORTHO05D008974 1.4e-174 617.1 471 67.9
TPR.G3456 Trifolium pratense HOM05D007126 ORTHO05D008974 6.7e-174 614.8 573 60.4
THA.LOC104817626 Tarenaya hassleriana HOM05D007126 ORTHO05D008974 2.0e-173 613.2 536 61.4
Thhalv10023389m.g Eutrema salsugineum HOM05D007126 ORTHO05D008974 4.4e-173 612.1 507 64.5
Aa31LG2G1430 Aethionema arabicum HOM05D007126 ORTHO05D008974 7.4e-173 611.3 509 62.7
Lj2C166T10 Lonicera japonica HOM05D007126 ORTHO05D008974 4.8e-172 608.6 609 59.1
Sc22g0004970 Simmondsia chinensis HOM05D007126 ORTHO05D008974 6.3e-172 608.2 582 58.4
Oeu009966.1 Olea europaea HOM05D007126 ORTHO05D008974 1.1e-171 607.4 483 66.7
Aqoxy5G04057_Aqoxy5G04058 Aquilegia oxysepala HOM05D007126 ORTHO05D008974 2.4e-171 606.3 507 63.1
Lalb_Chr09g0332411 Lupinus albus HOM05D007126 ORTHO05D008974 1.7e-169 600.1 541 61.4
DCAR_029908 Daucus carota HOM05D007126 ORTHO05D008974 2.5e-168 596.3 462 68.0
PSO063G3961 Papaver somniferum HOM05D007126 ORTHO05D008974 2.5e-168 596.3 565 58.4
Hma1.2p1_0440F.1_g153360 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 4.0e-166 589.0 635 54.8
AUR62019847 Chenopodium quinoa HOM05D007126 ORTHO05D008974 2.6e-165 586.3 599 56.9
arahy.Tifrunner.gnm1.ann1.U3A0V6 Arachis hypogaea HOM05D007126 ORTHO05D008974 2.8e-164 582.8 590 57.3
Sabra01G0067000 Salix brachista HOM05D007126 ORTHO05D008974 4.8e-164 582.0 438 69.4
AUR62010848 Chenopodium quinoa HOM05D007126 ORTHO05D008974 1.4e-163 580.5 494 63.6
Nitab4.5_0004010g0090 Nicotiana tabacum HOM05D007126 ORTHO05D008974 1.0e-161 574.3 537 59.8
Nn1g08439 Nelumbo nucifera HOM05D007126 ORTHO05D008974 5.7e-157 558.5 590 54.6
Peaxi162Scf00117g01130 Petunia axillaris HOM05D007126 ORTHO05D008974 2.2e-156 556.6 508 59.3
Psat7g210120 Pisum sativum HOM05D007126 ORTHO05D008974 2.0e-154 550.1 486 60.9
ATR0598G096 Amborella trichopoda HOM05D007126 ORTHO05D008974 4.5e-154 548.9 584 53.1
arahy.Tifrunner.gnm1.ann1.GEY0M8 Arachis hypogaea HOM05D007126 ORTHO05D008974 4.5e-154 548.9 611 53.8
Lsat_1_v5_gn_3_10920 Lactuca sativa HOM05D007126 ORTHO05D008974 4.5e-154 548.9 579 55.3
SGA_v2.0_scaffold305G47987 Striga asiatica HOM05D007126 ORTHO05D008974 4.2e-152 542.3 502 60.6
Cpa.g.sc79.28 Carica papaya HOM05D007126 ORTHO05D008974 1.2e-151 540.8 447 64.7
EL10Ac5g12922 Beta vulgaris HOM05D007126 ORTHO05D008974 4.4e-149 532.3 609 53.4
SalBow1G1535 Salvia bowleyana HOM05D007126 ORTHO05D008974 1.1e-147 527.7 495 60.2
HPP92_007857 Vanilla planifolia HOM05D007126 ORTHO05D008974 2.7e-146 523.1 524 54.8
unitig_37.g12131 Utricularia gibba HOM05D007126 ORTHO05D008974 4.4e-141 505.8 526 54.0
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 3.5e-138 496.1 533 54.6
vmacro11349 Vaccinium macrocarpon HOM05D007126 ORTHO05D008974 4.0e-134 482.6 613 50.9
Zm00001eb028190 Zea mays HOM05D007126 ORTHO05D008974 3.6e-127 459.5 571 47.5
Mapoly0029s0043 Marchantia polymorpha HOM05D007126 ORTHO05D008974 6.2e-127 458.8 504 48.8
Pp3c15_17220 Physcomitrium patens HOM05D007126 ORTHO05D008974 6.6e-121 438.7 490 48.4
TAR374G0215 Trochodendron aralioides HOM05D007126 ORTHO05D008974 1.6e-114 417.5 322 68.9
CDE08G1056 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 1.9e-112 410.6 353 58.1
Phvul.002G298304 Phaseolus vulgaris HOM05D007126 ORTHO05D008974 2.1e-111 407.1 325 66.8
SMO367G1126 Selaginella moellendorffii HOM05D007126 ORTHO05D008974 4.7e-111 406.0 509 46.8
CBR_g19104 Chara braunii HOM05D007126 ORTHO05D008974 6.9e-94 349.0 510 42.9
Carub.0002s0034 Capsella rubella HOM05D007126 ORTHO05D008974 1.3e-71 275.0 227 65.6
FAN18G3621 Fragaria x ananassa HOM05D007126 ORTHO05D008974 3.0e-65 253.8 259 59.5
FAN08G3578 Fragaria x ananassa HOM05D007126 ORTHO05D008974 1.9e-59 234.6 283 54.1
Carub.0002s0035 Capsella rubella HOM05D007126 ORTHO05D008974 5.7e-56 223.0 210 53.3
Dinv37525 Davidia involucrata HOM05D007126 ORTHO05D008974 6.3e-55 219.5 273 49.5
Cre14.g611950 Chlamydomonas reinhardtii HOM05D007126 ORTHO05D008974 4.5e-53 213.4 552 31.5
Os08g0332700 Oryza sativa ssp. japonica HOM05D007126 ORTHO05D008974 1.1e-51 208.8 263 51.3
SEGI_23531 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 5.5e-51 206.5 199 52.3
SEGI_08908 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 1.1e-46 192.2 182 54.4
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 1.7e-39 168.3 240 46.2
CDE08G0877 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 9.1e-38 162.5 138 66.7
Cfa021999 Carpinus fangiana HOM05D007126 ORTHO05D008974 6.3e-31 139.8 171 46.8
SEGI_34352 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 3.3e-19 100.9 108 53.7
Cpa.g.sc79.27 Carica papaya HOM05D007126 ORTHO05D008974 1.0e-12 79.3 52 82.7
BcaC09g50327 Brassica carinata HOM05D017681 ORTHO05D019883 9.9e-08 62.8 117 35.0
BcaC04g20679 Brassica carinata HOM05D017681 ORTHO05D019883 6.4e-07 60.1 117 33.3


User provided reference genes

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