Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G011130 Citrullus lanatus HOM05D005907 ORTHO05D007033 7.1e-93 344.0 181 100.0
CsaV3_4G007120 Cucumis sativus L. HOM05D005907 ORTHO05D007033 9.4e-85 317.0 181 91.7
Sed0007709 Sechium edule HOM05D005907 ORTHO05D007033 7.2e-69 264.2 167 80.2
Cfa012308 Carpinus fangiana HOM05D005907 ORTHO05D007033 4.1e-48 195.3 165 57.0
CiPaw.11G074000 Carya illinoinensis HOM05D005907 ORTHO05D007033 2.9e-46 189.1 166 55.4
RcHm_v2.0_Chr7g0215261 Rosa chinensis HOM05D005907 ORTHO05D007033 1.2e-42 177.2 165 52.7
Atru.chr8.2614 Acer truncatum HOM05D005907 ORTHO05D007033 3.4e-42 175.6 178 51.7
Actinidia01244 Actinidia chinensis HOM05D005907 ORTHO05D007033 5.7e-42 174.9 178 48.9
FAN08G1334 Fragaria x ananassa HOM05D005907 ORTHO05D007033 1.7e-41 173.3 175 51.4
COL.COLO4_16745 Corchorus olitorius HOM05D005907 ORTHO05D007033 2.2e-41 172.9 178 48.3
TWI60G0533 Tripterygium wilfordii HOM05D005907 ORTHO05D007033 3.7e-41 172.2 175 45.7
FvH4_5g24980 Fragaria vesca HOM05D005907 ORTHO05D007033 8.3e-41 171.0 166 52.4
FAN18G3850 Fragaria x ananassa HOM05D005907 ORTHO05D007033 8.3e-41 171.0 166 52.4
CSS0017808 Camellia sinensis var. sinensis HOM05D005907 ORTHO05D007033 1.1e-40 170.6 175 50.9
FAN04G3107 Fragaria x ananassa HOM05D005907 ORTHO05D007033 1.8e-40 169.9 166 51.2
Thecc.03G320600 Theobroma cacao HOM05D005907 ORTHO05D007033 1.8e-40 169.9 178 49.4
TAR636G1547 Trochodendron aralioides HOM05D005907 ORTHO05D007033 1.8e-40 169.9 173 49.1
Nn1g09337 Nelumbo nucifera HOM05D005907 ORTHO05D007033 5.4e-40 168.3 174 48.3
Duzib205G2043 Durio zibethinus HOM05D005907 ORTHO05D007033 1.6e-39 166.8 172 48.8
Potri.004G235000 Populus trichocarpa HOM05D005907 ORTHO05D007033 3.5e-39 165.6 167 51.5
Prupe.5G013600 Prunus persica HOM05D005907 ORTHO05D007033 7.8e-39 164.5 186 44.6
Ciclev10012886m.g Citrus clementina HOM05D005907 ORTHO05D007033 2.3e-38 162.9 177 50.8
PGR031G0343 Punica granatum HOM05D005907 ORTHO05D007033 2.9e-38 162.5 166 52.4
GSVIVG01036890001 Vitis vinifera HOM05D005907 ORTHO05D007033 6.6e-38 161.4 179 48.6
CAN.G998.7 Capsicum annuum HOM05D005907 ORTHO05D007033 1.1e-37 160.6 177 45.2
Manes.17G003749 Manihot esculenta HOM05D005907 ORTHO05D007033 1.1e-37 160.6 164 47.6
TAR629G0350 Trochodendron aralioides HOM05D005907 ORTHO05D007033 1.9e-37 159.8 172 48.3
Hund14310 Selenicereus undatus HOM05D005907 ORTHO05D007033 2.5e-37 159.5 178 47.8
Rhsim11G0037900 Rhododendron simsii HOM05D005907 ORTHO05D007033 5.6e-37 158.3 166 47.6
Cc08_g05990 Coffea canephora HOM05D005907 ORTHO05D007033 1.2e-36 157.1 177 47.5
Medtr5g025640 Medicago truncatula HOM05D005907 ORTHO05D007033 1.2e-36 157.1 170 50.6
Oeu046770.1 Olea europaea HOM05D005907 ORTHO05D007033 1.2e-36 157.1 159 49.1
MD06G1011300 Malus domestica HOM05D005907 ORTHO05D007033 1.6e-36 156.8 186 46.2
Gohir.A08G148600 Gossypium hirsutum HOM05D005907 ORTHO05D007033 3.6e-36 155.6 173 48.6
Lj3A1053G42 Lonicera japonica HOM05D005907 ORTHO05D007033 3.6e-36 155.6 165 46.1
Lalb_Chr05g0215181 Lupinus albus HOM05D005907 ORTHO05D007033 6.1e-36 154.8 183 46.4
Oeu047809.2 Olea europaea HOM05D005907 ORTHO05D007033 8.0e-36 154.5 177 42.9
MSTRG.25750 Avicennia marina HOM05D005907 ORTHO05D007033 1.0e-35 154.1 164 48.8
Gorai.004G176900 Gossypium raimondii HOM05D005907 ORTHO05D007033 1.0e-35 154.1 173 47.4
Peaxi162Scf00876g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 1.0e-35 154.1 165 44.2
Eucgr.E01152 Eucalyptus grandis HOM05D005907 ORTHO05D007033 3.1e-35 152.5 169 51.5
Lj2g0019236 Lotus japonicus HOM05D005907 ORTHO05D007033 3.1e-35 152.5 181 47.0
TPR.G8986 Trifolium pratense HOM05D005907 ORTHO05D007033 5.2e-35 151.8 169 46.7
vmacro00100 Vaccinium macrocarpon HOM05D005907 ORTHO05D007033 6.8e-35 151.4 167 49.1
Lalb_Chr09g0325061 Lupinus albus HOM05D005907 ORTHO05D007033 8.9e-35 151.0 163 49.1
Gohir.D08G169700 Gossypium hirsutum HOM05D005907 ORTHO05D007033 1.2e-34 150.6 173 48.0
CANSAT35G1964 Cannabis sativa HOM05D005907 ORTHO05D007033 2.0e-34 149.8 166 48.2
PSO339G2078 Papaver somniferum HOM05D005907 ORTHO05D007033 2.0e-34 149.8 166 45.8
Nitab4.5_0000986g0090 Nicotiana tabacum HOM05D005907 ORTHO05D007033 2.6e-34 149.4 163 47.9
Glyma.01G153000 Glycine max HOM05D005907 ORTHO05D007033 3.4e-34 149.1 173 49.7
Lalb_Chr16g0380441 Lupinus albus HOM05D005907 ORTHO05D007033 3.4e-34 149.1 163 48.5
Nn3g19120 Nelumbo nucifera HOM05D005907 ORTHO05D007033 3.4e-34 149.1 163 47.9
Solyc08g075290.2 Solanum lycopersicum HOM05D005907 ORTHO05D007033 3.4e-34 149.1 165 42.4
Migut.A00472 Erythranthe guttata HOM05D005907 ORTHO05D007033 4.4e-34 148.7 179 40.8
Sopen08g023890 Solanum pennellii HOM05D005907 ORTHO05D007033 5.8e-34 148.3 165 41.8
Psat2g145040 Pisum sativum HOM05D005907 ORTHO05D007033 7.5e-34 147.9 174 45.4
Glyma.16G076400 Glycine max HOM05D005907 ORTHO05D007033 1.3e-33 147.1 161 49.1
Glyma.09G218300 Glycine max HOM05D005907 ORTHO05D007033 2.2e-33 146.4 173 48.6
arahy.Tifrunner.gnm1.ann1.4G5U2W Arachis hypogaea HOM05D005907 ORTHO05D007033 2.9e-33 146.0 171 45.6
arahy.Tifrunner.gnm1.ann1.Y9HS7A Arachis hypogaea HOM05D005907 ORTHO05D007033 2.9e-33 146.0 171 45.6
Sed0019955 Sechium edule HOM05D005907 ORTHO05D007033 4.9e-33 145.2 154 48.7
HanXRQChr08g0233691 Helianthus annuus HOM05D005907 ORTHO05D007033 9.2e-32 141.0 170 45.3
Gorai.008G218600 Gossypium raimondii HOM05D005907 ORTHO05D007033 1.2e-31 140.6 162 44.4
Duzib068G0478 Durio zibethinus HOM05D005907 ORTHO05D007033 3.5e-31 139.0 183 44.3
Gohir.D12G203800 Gossypium hirsutum HOM05D005907 ORTHO05D007033 3.5e-31 139.0 162 43.8
VMungo1215G2629 Vigna mungo HOM05D001324 ORTHO05D001220 4.6e-31 138.7 171 42.7
Medtr8g072220 Medicago truncatula HOM05D005907 ORTHO05D007033 1.0e-30 137.5 153 49.7
PGR042G1103 Punica granatum HOM05D005907 ORTHO05D007033 1.3e-30 137.1 155 51.6
THA.LOC104814387 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 6.6e-30 134.8 165 42.4
VMungo0251G3198 Vigna mungo HOM05D005907 ORTHO05D007033 6.6e-30 134.8 179 43.6
SalBow4G0438 Salvia bowleyana HOM05D005907 ORTHO05D007033 7.3e-29 131.3 160 45.0
Gohir.A12G201000 Gossypium hirsutum HOM05D005907 ORTHO05D007033 9.5e-29 131.0 162 42.6
Phvul.002G122500 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 9.5e-29 131.0 154 45.5
Haze_08421 Corylus avellana HOM05D005907 ORTHO05D007033 2.1e-28 129.8 107 57.9
Thhalv10026210m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 2.8e-28 129.4 163 41.1
Aa31LG2G14390 Aethionema arabicum HOM05D005907 ORTHO05D007033 3.6e-28 129.0 168 38.7
Manes.15G184500 Manihot esculenta HOM05D005907 ORTHO05D007033 4.7e-28 128.6 145 44.1
Nitab4.5_0006244g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 1.1e-27 127.5 164 45.1
AT4G19370 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 1.4e-27 127.1 163 41.1
Sc07g0008040 Simmondsia chinensis HOM05D005907 ORTHO05D007033 1.4e-27 127.1 119 50.4
SalBow8G0159 Salvia bowleyana HOM05D005907 ORTHO05D007033 1.8e-27 126.7 171 41.5
Sp7g17980 Schrenkiella parvula HOM05D005907 ORTHO05D007033 1.8e-27 126.7 165 41.8
ECA233G3754 Erigeron canadensis HOM05D005907 ORTHO05D007033 2.3e-27 126.3 167 38.9
Thhalv10008873m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 6.8e-27 124.8 175 38.3
Carub.0001s3002 Capsella rubella HOM05D005907 ORTHO05D007033 8.9e-27 124.4 159 40.9
Aa31LG6G1970 Aethionema arabicum HOM05D005907 ORTHO05D007033 1.5e-26 123.6 164 41.5
Sp4g03880 Schrenkiella parvula HOM05D005907 ORTHO05D007033 1.5e-26 123.6 157 41.4
THA.LOC104806200 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 1.5e-26 123.6 159 42.1
Carub.0007s2186 Capsella rubella HOM05D005907 ORTHO05D007033 2.0e-26 123.2 162 40.1
MELO3C016217.2 Cucumis melo HOM05D005907 ORTHO05D007033 3.4e-26 122.5 68 91.2
Phvul.003G278300 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 3.4e-26 122.5 141 44.7
AL1G45790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 9.8e-26 120.9 156 39.7
BcaB04g18131 Brassica carinata HOM05D005907 ORTHO05D007033 9.8e-26 120.9 149 42.3
BcaNung01784 Brassica carinata HOM05D005907 ORTHO05D007033 9.8e-26 120.9 154 40.9
Sp1g27370 Schrenkiella parvula HOM05D005907 ORTHO05D007033 9.8e-26 120.9 156 38.5
AL7G34790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 1.7e-25 120.2 160 40.0
CARHR031020 Cardamine hirsuta HOM05D005907 ORTHO05D007033 2.2e-25 119.8 177 36.7
Cpa.g.c30909 Carica papaya HOM05D005907 ORTHO05D007033 2.9e-25 119.4 136 44.1
A01p11320 Brassica napus HOM05D005907 ORTHO05D007033 1.1e-24 117.5 162 38.9
BraA01t01076Z Brassica rapa HOM05D005907 ORTHO05D007033 1.1e-24 117.5 162 38.9
CARHR226160 Cardamine hirsuta HOM05D005907 ORTHO05D007033 1.1e-24 117.5 160 40.0
CDE01G0013 Ceratophyllum demersum HOM05D005907 ORTHO05D007033 1.1e-24 117.5 150 42.7
A08p10440 Brassica napus HOM05D005907 ORTHO05D007033 1.4e-24 117.1 149 40.9
ATR0568G210 Amborella trichopoda HOM05D005907 ORTHO05D007033 2.4e-24 116.3 156 41.7
BcaC07g37737 Brassica carinata HOM05D005907 ORTHO05D007033 3.2e-24 115.9 149 41.6
BcaC09g51418 Brassica carinata HOM05D005907 ORTHO05D007033 3.2e-24 115.9 162 38.9
C01p13330 Brassica napus HOM05D005907 ORTHO05D007033 3.2e-24 115.9 162 38.9
BolC1t01308H Brassica oleracea HOM05D005907 ORTHO05D007033 3.2e-24 115.9 162 38.9
BolC8t48118H Brassica oleracea HOM05D005907 ORTHO05D007033 3.2e-24 115.9 149 41.6
BraA08t33042Z Brassica rapa HOM05D005907 ORTHO05D007033 6.0e-23 111.7 156 39.7
SGA_v2.0_scaffold121G33056 Striga asiatica HOM05D005907 ORTHO05D007033 1.5e-21 107.1 164 37.2
EL10Ac5g12591 Beta vulgaris HOM05D005907 ORTHO05D007033 3.3e-21 105.9 173 41.0
Peaxi162Scf00550g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 3.3e-21 105.9 108 50.0
AT1G31720 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 4.3e-21 105.5 127 41.7
Dinv37434 Davidia involucrata HOM05D005907 ORTHO05D007033 5.6e-21 105.1 118 46.6
Zm00001eb251950 Zea mays HOM05D005907 ORTHO05D007033 2.8e-20 102.8 146 40.4
unitig_37.g12906 Utricularia gibba HOM05D005907 ORTHO05D007033 2.3e-19 99.8 156 35.3
Os02g0703300 Oryza sativa ssp. japonica HOM05D005907 ORTHO05D007033 1.5e-18 97.1 136 40.4
Sed0021253 Sechium edule HOM05D005907 ORTHO05D007033 1.5e-18 97.1 116 40.5
Psat4g109120 Pisum sativum HOM05D005907 ORTHO05D007033 3.2e-16 89.4 117 43.6
ClCG11G016120 Citrullus lanatus HOM05D005907 ORTHO05D007033 4.1e-16 89.0 109 45.0
SEGI_15207 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 1.6e-15 87.0 172 32.0
Aqoxy2G03476 Aquilegia oxysepala HOM05D005907 ORTHO05D007033 2.5e-13 79.7 107 42.1
Haze_08422 Corylus avellana HOM05D005907 ORTHO05D007033 6.2e-12 75.1 67 55.2
arahy.Tifrunner.gnm1.ann1.UI3LS8 Arachis hypogaea HOM05D005907 ORTHO05D007033 2.4e-11 73.2 94 43.6
arahy.Tifrunner.gnm1.ann1.VB8HUC Arachis hypogaea HOM05D005907 ORTHO05D007033 8.9e-11 71.2 94 42.6
SMO201G0204 Selaginella moellendorffii HOM05D002819 ORTHO05D003207 1.5e-10 70.5 163 30.7
Sabra01G0179700 Salix brachista HOM05D005907 ORTHO05D007033 3.4e-10 69.3 73 49.3
SEGI_02785 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 3.4e-10 69.3 141 33.3
Nitab4.5_0009213g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 9.9e-10 67.8 57 50.9
CSS0046349 Camellia sinensis var. sinensis HOM05D002819 ORTHO05D003207 2.9e-09 66.2 166 32.5
SGA_v2.0_scaffold50G18432 Striga asiatica HOM05D002819 ORTHO05D003207 3.8e-09 65.9 146 34.9
SEGI_27585 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 4.9e-09 65.5 156 30.1
Actinidia28266 Actinidia chinensis HOM05D002819 ORTHO05D003207 6.4e-09 65.1 146 34.9
Lsat_1_v5_gn_6_17141 Lactuca sativa HOM05D005907 ORTHO05D007033 8.4e-09 64.7 83 37.3
Actinidia18697 Actinidia chinensis HOM05D002819 ORTHO05D003207 1.1e-08 64.3 150 33.3
arahy.Tifrunner.gnm1.ann1.93DHY7 Arachis hypogaea HOM05D005907 ORTHO05D007033 1.1e-08 64.3 69 53.6
PGSC0003DMG400000568 Solanum tuberosum HOM05D002819 ORTHO05D003207 2.4e-08 63.2 146 34.2
ClCG11G016110 Citrullus lanatus HOM05D005907 ORTHO05D007033 4.2e-08 62.4 48 60.4
CAN.G303.71 Capsicum annuum HOM05D002819 ORTHO05D003207 5.4e-08 62.0 166 31.3
Peaxi162Scf00133g00916 Petunia axillaris HOM05D002819 ORTHO05D003207 5.4e-08 62.0 146 32.9
Rhsim03G0220200 Rhododendron simsii HOM05D002819 ORTHO05D003207 5.4e-08 62.0 142 34.5
TAR629G2358 Trochodendron aralioides HOM05D002819 ORTHO05D003207 5.4e-08 62.0 158 29.1
Sopen03g027610 Solanum pennellii HOM05D002819 ORTHO05D003207 7.1e-08 61.6 146 34.2
Solyc03g096860.3 Solanum lycopersicum HOM05D002819 ORTHO05D003207 9.3e-08 61.2 146 34.2
HanXRQChr07g0186991 Helianthus annuus HOM05D002819 ORTHO05D003207 1.6e-07 60.5 180 28.3
Peaxi162Scf01650g00038 Petunia axillaris HOM05D002819 ORTHO05D003207 1.6e-07 60.5 162 30.2
CSS0022427 Camellia sinensis var. sinensis HOM05D002819 ORTHO05D003207 3.5e-07 59.3 132 33.3
Duzib128G0634 Durio zibethinus HOM05D002819 ORTHO05D003207 4.6e-07 58.9 169 29.0
HanXRQChr10g0304401 Helianthus annuus HOM05D002819 ORTHO05D003207 4.6e-07 58.9 170 24.1
Actinidia08734 Actinidia chinensis HOM05D002819 ORTHO05D003207 6.0e-07 58.5 147 33.3
vmacro10181 Vaccinium macrocarpon HOM05D002819 ORTHO05D003207 6.0e-07 58.5 137 32.1
Nitab4.5_0000021g0320 Nicotiana tabacum HOM05D002819 ORTHO05D003207 7.8e-07 58.2 147 31.3
Nitab4.5_0000943g0070 Nicotiana tabacum HOM05D005907 ORTHO05D007033 7.8e-07 58.2 90 37.8
SalBow4G1237 Salvia bowleyana HOM05D002819 ORTHO05D003207 1.0e-06 57.8 166 28.9
PGSC0003DMG400001952 Solanum tuberosum HOM05D005907 ORTHO05D007033 1.3e-06 57.4 54 46.3
Migut.F00954 Erythranthe guttata HOM05D002819 ORTHO05D003207 3.0e-06 56.2 169 28.4
FAN03G3363 Fragaria x ananassa HOM05D002819 ORTHO05D003207 3.0e-06 56.2 152 28.3
Mapoly0007s0269 Marchantia polymorpha HOM05D002819 ORTHO05D003207 3.0e-06 56.2 142 30.3
CiPaw.05G236700 Carya illinoinensis HOM05D002819 ORTHO05D003207 3.9e-06 55.8 146 31.5
DCAR_014571 Daucus carota HOM05D002819 ORTHO05D003207 3.9e-06 55.8 162 29.6
Nitab4.5_0005081g0090 Nicotiana tabacum HOM05D002819 ORTHO05D003207 3.9e-06 55.8 113 34.5
Sc19g0000260 Simmondsia chinensis HOM05D002819 ORTHO05D003207 3.9e-06 55.8 147 29.9
Os06g0114700 Oryza sativa ssp. japonica HOM05D002819 ORTHO05D003207 5.1e-06 55.5 156 28.8
arahy.Tifrunner.gnm1.ann1.QIP5TL Arachis hypogaea HOM05D002819 ORTHO05D003207 6.6e-06 55.1 162 26.5
HanXRQChr15g0491051 Helianthus annuus HOM05D002819 ORTHO05D003207 6.6e-06 55.1 169 24.3
Lj1A1032G30 Lonicera japonica HOM05D002819 ORTHO05D003207 6.6e-06 55.1 134 29.9
arahy.Tifrunner.gnm1.ann1.VUM9KL Arachis hypogaea HOM05D002819 ORTHO05D003207 8.7e-06 54.7 162 26.5
Hma1.2p1_0758F.1_g213570 Hydrangea macrophylla HOM05D002819 ORTHO05D003207 8.7e-06 54.7 147 30.6
PGR031G0062 Punica granatum HOM05D002819 ORTHO05D003207 8.7e-06 54.7 145 31.7


User provided reference genes

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