Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G010850 Citrullus lanatus HOM05D002924 ORTHO05D003122 4.3e-68 261.2 127 100.0
CsaV3_4G007460 Cucumis sativus L. HOM05D002924 ORTHO05D003122 4.1e-55 218.0 130 84.6
MELO3C016195.2 Cucumis melo HOM05D002924 ORTHO05D003122 5.1e-53 211.1 130 83.1
Sed0027890 Sechium edule HOM05D002924 ORTHO05D003122 2.6e-41 172.2 127 72.4
Sed0002750 Sechium edule HOM05D002924 ORTHO05D003122 4.5e-41 171.4 127 70.9
Gohir.D05G150200 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.9e-12 76.3 126 42.1
Potri.006G023301 Populus trichocarpa HOM05D002924 ORTHO05D003122 1.9e-12 76.3 127 40.2
ClCG01G024700 Citrullus lanatus HOM05D002924 ORTHO05D003122 7.4e-12 74.3 85 47.1
Gohir.A10G041900 Gossypium hirsutum HOM05D002924 ORTHO05D003122 9.7e-12 73.9 130 43.1
Gohir.D09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 9.7e-12 73.9 135 39.3
Gorai.006G092400 Gossypium raimondii HOM05D002924 ORTHO05D003122 9.7e-12 73.9 135 39.3
MELO3C007125.2 Cucumis melo HOM05D002924 ORTHO05D003122 1.3e-11 73.6 85 48.2
Gohir.A05G147700 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.3e-11 73.6 128 39.8
CsaV3_6G051810 Cucumis sativus L. HOM05D002924 ORTHO05D003122 1.7e-11 73.2 85 47.1
Gohir.D10G042800 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.7e-11 73.2 138 38.4
Gorai.009G154300 Gossypium raimondii HOM05D002924 ORTHO05D003122 1.7e-11 73.2 126 41.3
TAR626G1845 Trochodendron aralioides HOM05D002924 ORTHO05D003122 2.2e-11 72.8 121 41.3
Sed0024828 Sechium edule HOM05D002924 ORTHO05D003122 2.8e-11 72.4 124 39.5
Gohir.A09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 4.8e-11 71.6 95 44.2
Gorai.011G045300 Gossypium raimondii HOM05D002924 ORTHO05D003122 4.8e-11 71.6 138 37.7
Actinidia07706 Actinidia chinensis HOM05D002924 ORTHO05D003122 8.2e-11 70.9 125 40.0
Cc00_g01970 Coffea canephora HOM05D002924 ORTHO05D003122 8.2e-11 70.9 135 39.3
HanXRQChr15g0482111 Helianthus annuus HOM05D002924 ORTHO05D003122 8.2e-11 70.9 126 38.1
TWI53G0343 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 1.4e-10 70.1 85 43.5
COL.COLO4_31051 Corchorus olitorius HOM05D002924 ORTHO05D003122 1.8e-10 69.7 123 40.7
Dinv32237 Davidia involucrata HOM05D002924 ORTHO05D003122 1.8e-10 69.7 128 39.1
Thecc.06G148600 Theobroma cacao HOM05D002924 ORTHO05D003122 2.4e-10 69.3 131 40.5
TAR488G0001 Trochodendron aralioides HOM05D002924 ORTHO05D003122 2.4e-10 69.3 123 40.7
EL10Ac8g19657 Beta vulgaris HOM05D002924 ORTHO05D003122 3.1e-10 68.9 124 36.3
FAN21G3281 Fragaria x ananassa HOM05D002924 ORTHO05D003122 3.1e-10 68.9 137 36.5
Duzib160G0328 Durio zibethinus HOM05D002924 ORTHO05D003122 4.1e-10 68.6 125 40.8
TAR624G0146 Trochodendron aralioides HOM05D002924 ORTHO05D003122 4.1e-10 68.6 121 40.5
Duzib235G1474 Durio zibethinus HOM05D002924 ORTHO05D003122 5.3e-10 68.2 126 40.5
Peaxi162Scf00394g00120 Petunia axillaris HOM05D002924 ORTHO05D003122 5.3e-10 68.2 128 39.1
Ciclev10017198m.g Citrus clementina HOM05D002924 ORTHO05D003122 6.9e-10 67.8 130 42.3
Lsat_1_v5_gn_7_28101 Lactuca sativa HOM05D002924 ORTHO05D003122 6.9e-10 67.8 95 42.1
GSVIVG01007188001 Vitis vinifera HOM05D002924 ORTHO05D003122 6.9e-10 67.8 88 46.6
ECA236G5022 Erigeron canadensis HOM05D002924 ORTHO05D003122 1.2e-09 67.0 97 42.3
Nitab4.5_0001531g0020 Nicotiana tabacum HOM05D002924 ORTHO05D003122 2.0e-09 66.2 131 36.6
Sed0008794 Sechium edule HOM05D002924 ORTHO05D003122 2.0e-09 66.2 91 45.1
Nitab4.5_0005246g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 2.6e-09 65.9 145 35.9
GSVIVG01021518001 Vitis vinifera HOM05D002924 ORTHO05D003122 2.6e-09 65.9 84 47.6
Eucgr.E02416 Eucalyptus grandis HOM05D002924 ORTHO05D003122 3.4e-09 65.5 93 43.0
HanXRQChr04g0114381 Helianthus annuus HOM05D002924 ORTHO05D003122 3.4e-09 65.5 84 45.2
SalBow8G3543 Salvia bowleyana HOM05D002924 ORTHO05D003122 3.4e-09 65.5 87 44.8
Hund21543 Selenicereus undatus HOM05D002924 ORTHO05D003122 3.4e-09 65.5 131 36.6
Aqoxy1G01686 Aquilegia oxysepala HOM05D002924 ORTHO05D003122 4.5e-09 65.1 130 36.9
GSVIVG01021516001 Vitis vinifera HOM05D002924 ORTHO05D003122 4.5e-09 65.1 87 43.7
MD05G1282000 Malus domestica HOM05D002924 ORTHO05D003122 5.9e-09 64.7 94 40.4
Actinidia39583 Actinidia chinensis HOM05D002924 ORTHO05D003122 7.7e-09 64.3 130 38.5
CSS0028188 Camellia sinensis var. sinensis HOM05D002924 ORTHO05D003122 7.7e-09 64.3 137 36.5
Manes.15G122900 Manihot esculenta HOM05D002924 ORTHO05D003122 7.7e-09 64.3 134 36.6
TAR626G0560 Trochodendron aralioides HOM05D002924 ORTHO05D003122 7.7e-09 64.3 133 37.6
MSTRG.14778 Avicennia marina HOM05D002924 ORTHO05D003122 1.0e-08 63.9 85 42.4
Cc02_g30950 Coffea canephora HOM05D002924 ORTHO05D003122 1.0e-08 63.9 130 39.2
DCAR_007884 Daucus carota HOM05D002924 ORTHO05D003122 1.0e-08 63.9 89 42.7
GSVIVG01021514001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.0e-08 63.9 85 44.7
Cpa.g.sc17.12 Carica papaya HOM05D002924 ORTHO05D003122 1.3e-08 63.5 125 39.2
CiPaw.10G090800 Carya illinoinensis HOM05D002924 ORTHO05D003122 1.7e-08 63.2 140 35.7
FAN16G2964 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.7e-08 63.2 137 35.8
Glyma.15G093100 Glycine max HOM05D002924 ORTHO05D003122 1.7e-08 63.2 134 35.8
MBI02_g15229_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.7e-08 63.2 130 35.4
Nitab4.5_0001531g0050 Nicotiana tabacum HOM05D002924 ORTHO05D003122 1.7e-08 63.2 101 40.6
Atru.chr10.1192 Acer truncatum HOM05D002924 ORTHO05D003122 2.2e-08 62.8 140 37.1
MSTRG.16253 Avicennia marina HOM05D002924 ORTHO05D003122 2.2e-08 62.8 85 43.5
CANSAT64G2355 Cannabis sativa HOM05D002924 ORTHO05D003122 2.2e-08 62.8 114 38.6
Lj6g0009882 Lotus japonicus HOM05D002924 ORTHO05D003122 2.2e-08 62.8 138 34.1
MD09G1136800 Malus domestica HOM05D002924 ORTHO05D003122 2.2e-08 62.8 98 40.8
Peaxi162Scf00317g00121 Petunia axillaris HOM05D002924 ORTHO05D003122 2.2e-08 62.8 131 36.6
Sed0007473 Sechium edule HOM05D002924 ORTHO05D003122 2.2e-08 62.8 124 37.9
vmacro03333 Vaccinium macrocarpon HOM05D002924 ORTHO05D003122 2.2e-08 62.8 88 42.0
Actinidia18522 Actinidia chinensis HOM05D002924 ORTHO05D003122 2.9e-08 62.4 130 33.8
Rhsim13G0114700 Rhododendron simsii HOM05D002924 ORTHO05D003122 2.9e-08 62.4 88 43.2
ClCG03G006750 Citrullus lanatus HOM05D002924 ORTHO05D003122 3.8e-08 62.0 94 40.4
PGSC0003DMG400001174 Solanum tuberosum HOM05D002924 ORTHO05D003122 5.0e-08 61.6 125 36.8
Nitab4.5_0009991g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 6.5e-08 61.2 87 42.5
Peaxi162Scf00317g00117 Petunia axillaris HOM05D002924 ORTHO05D003122 6.5e-08 61.2 135 34.8
Prupe.3G188200 Prunus persica HOM05D002924 ORTHO05D003122 6.5e-08 61.2 95 42.1
QL05p059253 Quercus lobata HOM05D002924 ORTHO05D003122 6.5e-08 61.2 130 38.5
PGSC0003DMG400008781 Solanum tuberosum HOM05D002924 ORTHO05D003122 6.5e-08 61.2 124 35.5
AT1G30135 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 8.5e-08 60.8 121 37.2
FvH4_3g05360 Fragaria vesca HOM05D002924 ORTHO05D003122 8.5e-08 60.8 90 41.1
MD05G1282100 Malus domestica HOM05D002924 ORTHO05D003122 8.5e-08 60.8 95 41.1
MD17G1127000 Malus domestica HOM05D002924 ORTHO05D003122 8.5e-08 60.8 111 40.5
VMungo0540G0736 Vigna mungo HOM05D002924 ORTHO05D003122 1.1e-07 60.5 136 37.5
Dinv05213 Davidia involucrata HOM05D002924 ORTHO05D003122 1.4e-07 60.1 133 34.6
Migut.H01355 Erythranthe guttata HOM05D002924 ORTHO05D003122 1.4e-07 60.1 87 41.4
Manes.17G071600 Manihot esculenta HOM05D002924 ORTHO05D003122 1.4e-07 60.1 101 37.6
MD10G1260700 Malus domestica HOM05D002924 ORTHO05D003122 1.9e-07 59.7 93 38.7
Sed0009253 Sechium edule HOM05D002924 ORTHO05D003122 1.9e-07 59.7 130 35.4
Nn4g26591 Nelumbo nucifera HOM05D002924 ORTHO05D003122 2.5e-07 59.3 83 43.4
Glyma.05G141200 Glycine max HOM05D002924 ORTHO05D003122 3.2e-07 58.9 141 34.8
Solyc08g036640.3 Solanum lycopersicum HOM05D002924 ORTHO05D003122 3.2e-07 58.9 127 35.4
Sopen08g011400 Solanum pennellii HOM05D002924 ORTHO05D003122 3.2e-07 58.9 127 35.4
Glyma.08G096500 Glycine max HOM05D002924 ORTHO05D003122 5.5e-07 58.2 136 34.6
MBI02_g15230_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 5.5e-07 58.2 126 34.9
AL1G44040 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 7.2e-07 57.8 129 34.1
MBI18_g24474_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 7.2e-07 57.8 99 41.4
PGSC0003DMG400001178 Solanum tuberosum HOM05D002924 ORTHO05D003122 7.2e-07 57.8 124 34.7
Migut.M00900 Erythranthe guttata HOM05D002924 ORTHO05D003122 9.4e-07 57.4 133 36.8
Prupe.4G082500 Prunus persica HOM05D002924 ORTHO05D003122 9.4e-07 57.4 90 41.1
PGR004G2368 Punica granatum HOM05D002924 ORTHO05D003122 9.4e-07 57.4 90 43.3
PGR083G2757 Punica granatum HOM05D002924 ORTHO05D003122 9.4e-07 57.4 94 37.2
Solyc08g036620.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 9.4e-07 57.4 124 34.7
Phvul.006G165800 Phaseolus vulgaris HOM05D002924 ORTHO05D003122 1.2e-06 57.0 128 32.8
QL05p057398 Quercus lobata HOM05D002924 ORTHO05D003122 1.2e-06 57.0 139 36.7
Solyc08g036505.2 Solanum lycopersicum HOM05D002924 ORTHO05D003122 1.2e-06 57.0 126 34.1
unitig_26.g9758 Utricularia gibba HOM05D002924 ORTHO05D003122 1.2e-06 57.0 87 39.1
BcaC01g03456 Brassica carinata HOM05D010332 ORTHO05D012427 1.6e-06 56.6 118 34.7
BolC3t17510H Brassica oleracea HOM05D010332 ORTHO05D012427 1.6e-06 56.6 118 34.7
MSTRG.7496 Avicennia marina HOM05D002924 ORTHO05D003122 2.1e-06 56.2 84 38.1
DCAR_003905 Daucus carota HOM05D002924 ORTHO05D003122 2.1e-06 56.2 92 38.0
Glyma.13G219100 Glycine max HOM05D002924 ORTHO05D003122 2.1e-06 56.2 88 38.6
Glyma.14G002600 Glycine max HOM05D011327 ORTHO05D013488 2.1e-06 56.2 79 38.0
Sc05g0006100 Simmondsia chinensis HOM05D002924 ORTHO05D003122 2.1e-06 56.2 85 38.8
Sabra11G0066500 Salix brachista HOM05D002924 ORTHO05D003122 2.7e-06 55.8 86 41.9
Sopen08g011170 Solanum pennellii HOM05D002924 ORTHO05D003122 2.7e-06 55.8 87 37.9
Sopen08g011370 Solanum pennellii HOM05D002924 ORTHO05D003122 3.6e-06 55.5 124 33.9
TWI09G0754 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 3.6e-06 55.5 121 38.0
CANSAT35G0631 Cannabis sativa HOM05D002924 ORTHO05D003122 4.7e-06 55.1 104 35.6
FAN16G0603 Fragaria x ananassa HOM05D002924 ORTHO05D003122 6.1e-06 54.7 100 37.0
arahy.Tifrunner.gnm1.ann1.P4WXL8 Arachis hypogaea HOM05D002924 ORTHO05D003122 7.9e-06 54.3 141 29.8
CiPaw.09G122300 Carya illinoinensis HOM05D002924 ORTHO05D003122 7.9e-06 54.3 90 40.0
MBI02_g15233_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.9e-06 54.3 115 36.5


User provided reference genes

Program Settings