Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 9.5e-37 156.4 81 100.0
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 9.5e-37 156.4 81 100.0
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 7.8e-31 136.7 82 91.5
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 3.8e-30 134.4 82 90.2
Sed0009467 Sechium edule HOM05D004022 ORTHO05D004090 2.3e-22 108.6 71 81.7
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 4.3e-13 77.8 77 51.9
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.6e-12 75.9 71 53.5
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 1.6e-12 75.9 77 54.5
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.6e-12 75.9 74 58.1
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 2.8e-12 75.1 77 49.4
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 3.6e-12 74.7 79 53.2
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 4.7e-12 74.3 74 55.4
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 8.1e-12 73.6 79 51.9
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 8.1e-12 73.6 85 48.2
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 1.8e-11 72.4 80 50.0
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 5.8e-10 67.4 80 47.5
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 5.8e-10 67.4 81 49.4
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 1.3e-09 66.2 77 51.9
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 1.7e-09 65.9 73 52.1
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 2.2e-09 65.5 72 48.6
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.9e-09 65.1 89 41.6
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 2.9e-09 65.1 87 44.8
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 2.9e-09 65.1 87 47.1
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 3.7e-09 64.7 84 47.6
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 4.9e-09 64.3 92 42.4
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 4.9e-09 64.3 92 41.3
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 4.9e-09 64.3 97 41.2
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 4.9e-09 64.3 87 46.0
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 8.3e-09 63.5 78 47.4
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 8.3e-09 63.5 88 42.0
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 1.4e-08 62.8 99 37.4
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 5.4e-08 60.8 92 43.5
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 7.1e-08 60.5 96 41.7
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 7.1e-08 60.5 94 44.7
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 9.2e-08 60.1 114 35.1
Lj3g0019101 Lotus japonicus HOM05D004022 ORTHO05D004090 9.2e-08 60.1 88 45.5
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 9.2e-08 60.1 116 37.1
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.2e-07 59.7 93 40.9
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.2e-07 59.7 77 44.2
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.2e-07 59.7 114 35.1
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.2e-07 59.7 114 35.1
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 2.1e-07 58.9 90 40.0
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 2.1e-07 58.9 80 41.2
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.1e-07 58.9 95 40.0
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.1e-07 58.9 97 41.2
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 2.1e-07 58.9 97 41.2
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 2.1e-07 58.9 96 38.5
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 2.7e-07 58.5 85 44.7
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 2.7e-07 58.5 81 43.2
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 3.5e-07 58.2 110 37.3
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 3.5e-07 58.2 84 42.9
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 4.6e-07 57.8 92 39.1
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 4.6e-07 57.8 93 43.0
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 7.8e-07 57.0 87 42.5
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 7.8e-07 57.0 87 42.5
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 7.8e-07 57.0 87 42.5
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 7.8e-07 57.0 87 42.5
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 7.8e-07 57.0 87 42.5
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 7.8e-07 57.0 91 37.4
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 7.8e-07 57.0 77 44.2
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 7.8e-07 57.0 91 40.7
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 1.0e-06 56.6 87 42.5
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 1.0e-06 56.6 85 38.8
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 1.0e-06 56.6 76 42.1
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 1.3e-06 56.2 83 44.6
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 1.3e-06 56.2 85 41.2
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 1.7e-06 55.8 91 37.4
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 1.7e-06 55.8 83 44.6
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 1.7e-06 55.8 87 43.7
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 1.7e-06 55.8 87 43.7
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.7e-06 55.8 85 36.5
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 1.7e-06 55.8 113 36.3
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 2.3e-06 55.5 86 43.0
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 2.3e-06 55.5 84 44.0
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 2.3e-06 55.5 87 42.5
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 2.3e-06 55.5 87 43.7
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 2.3e-06 55.5 84 44.0
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 2.3e-06 55.5 87 42.5
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.3e-06 55.5 84 38.1
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 2.3e-06 55.5 99 37.4
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 2.3e-06 55.5 97 39.2
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 3.0e-06 55.1 90 35.6
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 3.0e-06 55.1 83 43.4
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 3.0e-06 55.1 99 36.4
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 3.9e-06 54.7 77 41.6
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 3.9e-06 54.7 83 43.4
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 3.9e-06 54.7 99 38.4
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 3.9e-06 54.7 95 41.1
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 3.9e-06 54.7 70 44.3
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 5.1e-06 54.3 87 42.5
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 5.1e-06 54.3 88 40.9
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 5.1e-06 54.3 83 44.6
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 5.1e-06 54.3 86 43.0
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 5.1e-06 54.3 83 43.4
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 5.1e-06 54.3 84 42.9
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 8.6e-06 53.5 86 39.5
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 8.6e-06 53.5 86 39.5
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 8.6e-06 53.5 93 37.6
Migut.M00649 Erythranthe guttata HOM05D004022 ORTHO05D004090 8.6e-06 53.5 68 44.1


User provided reference genes

Program Settings