Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 2.2e-199 698.7 348 100.0
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 4.2e-182 641.3 348 91.1
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 8.4e-175 617.1 331 92.4
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 1.2e-168 596.7 348 84.8
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 1.2e-120 437.2 311 67.5
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 5.9e-120 434.9 311 68.8
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 1.7e-119 433.3 311 68.8
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 2.9e-119 432.6 311 66.6
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 6.5e-119 431.4 307 70.0
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 1.5e-118 430.3 310 66.8
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 3.2e-118 429.1 307 69.4
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 7.2e-118 427.9 307 69.1
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 3.6e-117 425.6 312 65.7
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 3.6e-117 425.6 328 65.5
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 4.7e-117 425.2 307 68.7
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 1.4e-116 423.7 311 65.6
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 1.4e-116 423.7 306 69.0
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 4.0e-116 422.2 315 67.0
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 4.0e-116 422.2 314 66.9
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 5.2e-116 421.8 310 65.2
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.5e-115 420.2 314 66.2
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 2.6e-115 419.5 310 64.8
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 3.7e-114 415.6 318 65.1
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 6.3e-114 414.8 311 63.7
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 8.3e-114 414.5 309 64.1
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.4e-113 412.9 313 64.9
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 2.4e-113 412.9 310 65.2
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 3.1e-113 412.5 319 64.6
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 7.0e-113 411.4 315 64.8
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.2e-112 410.6 310 64.2
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 1.6e-112 410.2 313 63.9
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 2.0e-112 409.8 311 64.6
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 2.7e-112 409.5 311 63.7
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 5.9e-112 408.3 311 64.3
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 7.7e-112 407.9 310 64.5
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 7.7e-112 407.9 310 64.5
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 7.7e-112 407.9 333 61.3
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 2.3e-111 406.4 361 58.2
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 3.8e-111 405.6 314 65.0
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 5.0e-111 405.2 326 62.0
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 6.6e-111 404.8 316 63.3
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 8.6e-111 404.4 313 63.9
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.1e-110 404.1 315 62.9
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.5e-110 403.7 308 65.3
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 1.5e-110 403.7 314 63.7
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 1.5e-110 403.7 310 64.8
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 5.6e-110 401.7 314 64.6
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 9.5e-110 401.0 320 62.5
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 1.6e-109 400.2 310 64.5
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 1.6e-109 400.2 311 65.0
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 1.6e-109 400.2 309 65.0
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 2.8e-109 399.4 309 65.0
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 6.1e-109 398.3 302 63.9
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 8.0e-109 397.9 289 65.7
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 4.0e-108 395.6 317 62.5
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 1.2e-107 394.0 313 61.3
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 3.4e-107 392.5 311 61.4
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 4.4e-107 392.1 309 60.8
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 5.7e-107 391.7 313 61.0
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 6.4e-106 388.3 311 61.1
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 6.4e-106 388.3 275 66.9
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 1.1e-105 387.5 313 60.7
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.6e-104 383.6 267 71.5
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 2.7e-104 382.9 336 57.1
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 1.3e-103 380.6 310 61.9
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 2.3e-103 379.8 280 65.4
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 6.6e-103 378.3 311 59.2
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.9e-102 376.7 311 60.8
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 2.8e-101 372.9 309 61.2
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.0e-100 370.9 281 61.9
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 2.3e-100 369.8 312 60.3
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 2.3e-100 369.8 279 61.6
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 5.2e-100 368.6 280 64.6
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 2.6e-99 366.3 280 61.8
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 2.6e-99 366.3 321 57.3
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 4.4e-99 365.5 309 58.6
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 8.3e-98 361.3 275 66.2
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 2.4e-97 359.8 329 55.9
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 5.4e-97 358.6 314 58.9
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 9.2e-97 357.8 280 62.9
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 2.7e-96 356.3 332 55.1
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 6.0e-96 355.1 306 58.5
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.3e-95 354.0 280 62.1
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 1.3e-95 354.0 313 56.5
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 1.3e-95 354.0 240 72.5
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 3.9e-95 352.4 306 57.5
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.1e-94 350.9 309 57.0
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 2.5e-94 349.7 318 56.3
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 4.3e-94 349.0 308 57.8
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 9.5e-94 347.8 260 66.9
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 1.6e-93 347.1 308 57.5
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.6e-93 347.1 311 53.7
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 2.8e-93 346.3 308 57.1
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 8.1e-93 344.7 307 57.7
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 1.1e-92 344.4 308 56.2
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 1.1e-92 344.4 308 56.2
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 1.4e-92 344.0 308 56.2
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 1.8e-92 343.6 306 56.5
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 8.9e-92 341.3 308 55.5
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 1.2e-91 340.9 308 56.8
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 2.0e-91 340.1 308 56.5
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 2.6e-91 339.7 308 56.5
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 2.6e-91 339.7 308 56.5
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 3.4e-91 339.3 308 56.5
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 7.5e-91 338.2 324 51.9
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 4.9e-90 335.5 308 55.8
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 2.1e-88 330.1 233 70.0
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 4.6e-88 328.9 314 53.8
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 1.1e-86 324.3 279 59.9
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 5.6e-86 322.0 249 62.2
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 1.2e-85 320.9 280 58.6
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 1.6e-85 320.5 240 67.1
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 5.2e-84 315.5 311 55.0
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 2.6e-83 313.2 310 54.2
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.1e-81 307.8 287 52.6
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 1.9e-81 307.0 265 58.1
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 3.9e-79 299.3 285 52.3
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 3.3e-78 296.2 278 54.0
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.2e-77 294.3 262 57.3
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 1.6e-72 277.3 283 51.6
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 6.0e-72 275.4 317 45.1
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 1.7e-58 230.7 199 57.8
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.9e-50 203.4 191 52.4
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 7.4e-46 188.7 282 40.8
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 1.3e-45 188.0 194 55.7
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.1e-44 184.9 168 54.8
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 2.0e-43 180.6 135 63.0
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 9.7e-38 161.8 109 65.1
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 1.7e-34 151.0 112 67.9
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 2.6e-27 127.1 115 56.5
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 1.4e-15 88.2 282 31.2
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.2e-08 65.1 68 55.9


User provided reference genes

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