Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G009760 Citrullus lanatus HOM05D006441 ORTHO05D008203 3.1e-87 325.1 162 100.0
MELO3C024853.2 Cucumis melo HOM05D006441 ORTHO05D008203 1.6e-56 223.0 141 80.9
CsaV3_4G008510 Cucumis sativus L. HOM05D006441 ORTHO05D008203 2.5e-52 209.1 141 79.4
Sed0000343 Sechium edule HOM05D006441 ORTHO05D008203 8.5e-37 157.5 139 62.6
CiPaw.07G037200 Carya illinoinensis HOM05D007830 ORTHO05D009947 6.1e-35 151.4 143 58.0
CANSAT01G2205 Cannabis sativa HOM05D006441 ORTHO05D008203 1.1e-33 147.1 138 55.8
Thecc.01G077600 Theobroma cacao HOM05D006441 ORTHO05D008203 2.0e-33 146.4 126 61.9
Manes.12G118300 Manihot esculenta HOM05D006441 ORTHO05D008203 1.7e-32 143.3 123 62.6
Duzib147G0493 Durio zibethinus HOM05D006441 ORTHO05D008203 6.3e-32 141.4 141 59.6
MD02G1190600 Malus domestica HOM05D006441 ORTHO05D008203 8.2e-32 141.0 149 55.7
Cfa006781 Carpinus fangiana HOM05D006441 ORTHO05D008203 1.4e-31 140.2 141 54.6
COL.COLO4_11626 Corchorus olitorius HOM05D006441 ORTHO05D008203 2.4e-31 139.4 143 54.5
Prupe.6G215400 Prunus persica HOM05D006441 ORTHO05D008203 2.4e-31 139.4 135 57.0
Ciclev10025205m.g Citrus clementina HOM05D006441 ORTHO05D008203 7.0e-31 137.9 83 74.7
Haze_03978 Corylus avellana HOM05D006441 ORTHO05D008203 4.5e-30 135.2 138 55.8
Atru.chr3.1073 Acer truncatum HOM05D006441 ORTHO05D008203 1.0e-29 134.0 97 68.0
CiPaw.07G037300 Carya illinoinensis HOM05D006441 ORTHO05D008203 1.0e-29 134.0 143 54.5
Potri.007G007700 Populus trichocarpa HOM05D006441 ORTHO05D008203 2.9e-29 132.5 105 63.8
FAN23G0818 Fragaria x ananassa HOM05D006441 ORTHO05D008203 3.8e-29 132.1 141 56.0
PGR102G2456 Punica granatum HOM05D006441 ORTHO05D008203 5.0e-29 131.7 101 66.3
RcHm_v2.0_Chr1g0321821 Rosa chinensis HOM05D006441 ORTHO05D008203 5.0e-29 131.7 135 54.8
THA.LOC104821215 Tarenaya hassleriana HOM05D006441 ORTHO05D008203 6.5e-29 131.3 144 55.6
Gohir.D11G211300 Gossypium hirsutum HOM05D006441 ORTHO05D008203 1.1e-28 130.6 138 52.9
Gorai.007G227000 Gossypium raimondii HOM05D006441 ORTHO05D008203 1.9e-28 129.8 138 52.9
GSVIVG01002450001 Vitis vinifera HOM05D006441 ORTHO05D008203 2.5e-28 129.4 108 61.1
FvH4_1g18350 Fragaria vesca HOM05D006441 ORTHO05D008203 4.2e-28 128.6 141 55.3
RcHm_v2.0_Chr2g0109051 Rosa chinensis HOM05D006441 ORTHO05D008203 4.2e-28 128.6 141 54.6
FAN19G0231 Fragaria x ananassa HOM05D006441 ORTHO05D008203 7.2e-28 127.9 142 55.6
FAN26G0165 Fragaria x ananassa HOM05D006441 ORTHO05D008203 7.2e-28 127.9 160 51.2
Sabra07G0005900 Salix brachista HOM05D006441 ORTHO05D008203 9.4e-28 127.5 95 65.3
Gohir.A11G211600 Gossypium hirsutum HOM05D006441 ORTHO05D008203 1.2e-27 127.1 138 52.9
arahy.Tifrunner.gnm1.ann1.FY2PML Arachis hypogaea HOM05D006441 ORTHO05D008203 1.6e-27 126.7 119 58.8
QL06p038630 Quercus lobata HOM05D006441 ORTHO05D008203 2.1e-27 126.3 79 75.9
arahy.Tifrunner.gnm1.ann1.H9DIKV Arachis hypogaea HOM05D006441 ORTHO05D008203 8.0e-27 124.4 119 57.1
CSS0036817 Camellia sinensis var. sinensis HOM05D006441 ORTHO05D008203 2.3e-26 122.9 95 63.2
TWI53G1431 Tripterygium wilfordii HOM05D006441 ORTHO05D008203 6.7e-26 121.3 105 61.0
Nn6g34544 Nelumbo nucifera HOM05D006441 ORTHO05D008203 1.5e-25 120.2 122 54.9
A06p17970 Brassica napus HOM05D006441 ORTHO05D008203 2.6e-25 119.4 114 57.0
Thhalv10010236m.g Eutrema salsugineum HOM05D006441 ORTHO05D008203 3.3e-25 119.0 145 47.6
Aa31LG4G18210 Aethionema arabicum HOM05D006441 ORTHO05D008203 5.7e-25 118.2 116 56.9
BraA06t24888Z Brassica rapa HOM05D006441 ORTHO05D008203 7.5e-25 117.9 136 50.0
BcaC07g39436 Brassica carinata HOM05D006441 ORTHO05D008203 9.7e-25 117.5 114 56.1
C08p24750 Brassica napus HOM05D006441 ORTHO05D008203 9.7e-25 117.5 114 56.1
BolC8t50089H Brassica oleracea HOM05D006441 ORTHO05D008203 9.7e-25 117.5 136 50.0
LjContig00049g0002658 Lotus japonicus HOM05D006441 ORTHO05D008203 2.2e-24 116.3 98 61.2
BcaB01g00678 Brassica carinata HOM05D006441 ORTHO05D008203 2.8e-24 115.9 121 53.7
CARHR158800 Cardamine hirsuta HOM05D006441 ORTHO05D008203 3.7e-24 115.5 98 61.2
Carub.0005s1608 Capsella rubella HOM05D006441 ORTHO05D008203 4.8e-24 115.2 145 46.9
Eucgr.H02336 Eucalyptus grandis HOM05D006441 ORTHO05D008203 1.8e-23 113.2 131 46.6
Nitab4.5_0000776g0060 Nicotiana tabacum HOM05D006441 ORTHO05D008203 1.8e-23 113.2 72 70.8
Psat2g019280 Pisum sativum HOM05D006441 ORTHO05D008203 3.1e-23 112.5 96 64.6
Nitab4.5_0000142g0480 Nicotiana tabacum HOM05D006441 ORTHO05D008203 5.3e-23 111.7 72 70.8
Ca_06220_v3 Cicer arietinum L. HOM05D006441 ORTHO05D008203 7.0e-23 111.3 119 53.8
Migut.H00320 Erythranthe guttata HOM05D006441 ORTHO05D008203 9.1e-23 110.9 117 50.4
Medtr5g089970 Medicago truncatula HOM05D006441 ORTHO05D008203 9.1e-23 110.9 68 79.4
PGSC0003DMG400021428 Solanum tuberosum HOM05D006441 ORTHO05D008203 9.1e-23 110.9 123 52.0
AL5G29680 Arabidopsis lyrata HOM05D006441 ORTHO05D008203 1.2e-22 110.5 98 59.2
Lalb_Chr14g0365131 Lupinus albus HOM05D006441 ORTHO05D008203 1.2e-22 110.5 113 54.9
TPR.G19350 Trifolium pratense HOM05D006441 ORTHO05D008203 1.6e-22 110.2 89 66.3
Dinv23055 Davidia involucrata HOM05D006441 ORTHO05D008203 2.0e-22 109.8 149 47.7
Lsat_1_v5_gn_3_85860 Lactuca sativa HOM05D006441 ORTHO05D008203 3.5e-22 109.0 117 50.4
SGA_v2.0_scaffold269G46276 Striga asiatica HOM05D006441 ORTHO05D008203 3.5e-22 109.0 123 50.4
AT3G49725 Arabidopsis thaliana HOM05D006441 ORTHO05D008203 4.5e-22 108.6 98 58.2
Cc07_g07440 Coffea canephora HOM05D006441 ORTHO05D008203 5.9e-22 108.2 140 50.7
Sp5g12360 Schrenkiella parvula HOM05D006441 ORTHO05D008203 5.9e-22 108.2 144 45.1
Aqoxy6G02956 Aquilegia oxysepala HOM05D006441 ORTHO05D008203 1.0e-21 107.5 89 59.6
Solyc02g092010.4 Solanum lycopersicum HOM05D006441 ORTHO05D008203 1.0e-21 107.5 112 52.7
Sopen02g036590 Solanum pennellii HOM05D006441 ORTHO05D008203 1.0e-21 107.5 112 52.7
CAN.G1343.13 Capsicum annuum HOM05D006441 ORTHO05D008203 3.8e-21 105.5 76 60.5
MSTRG.23600 Avicennia marina HOM05D006441 ORTHO05D008203 1.1e-20 104.0 136 44.9
CDE07G0466 Ceratophyllum demersum HOM05D006441 ORTHO05D008203 1.1e-20 104.0 165 41.2
Hund16422 Selenicereus undatus HOM05D006441 ORTHO05D008203 1.9e-20 103.2 105 55.2
Sc16g0002790 Simmondsia chinensis HOM05D006441 ORTHO05D008203 2.5e-20 102.8 74 67.6
TAR628G1609 Trochodendron aralioides HOM05D006441 ORTHO05D008203 3.2e-20 102.4 109 53.2
AUR62007550 Chenopodium quinoa HOM05D006441 ORTHO05D008203 5.5e-20 101.7 112 54.5
DCAR_010797 Daucus carota HOM05D006441 ORTHO05D008203 9.4e-20 100.9 140 42.9
VMungo0647G1795 Vigna mungo HOM05D006441 ORTHO05D008203 1.6e-19 100.1 56 82.1
Phvul.008G200200 Phaseolus vulgaris HOM05D006441 ORTHO05D008203 3.6e-19 99.0 65 75.4
Rhsim10G0094400 Rhododendron simsii HOM05D006441 ORTHO05D008203 6.1e-19 98.2 145 44.8
HanXRQChr12g0377011 Helianthus annuus HOM05D006441 ORTHO05D008203 1.4e-18 97.1 106 50.0
Actinidia36417 Actinidia chinensis HOM05D006441 ORTHO05D008203 1.8e-18 96.7 142 45.1
Glyma.02G280500 Glycine max HOM05D006441 ORTHO05D008203 1.8e-18 96.7 64 75.0
HPP92_008937 Vanilla planifolia HOM05D006441 ORTHO05D008203 1.5e-17 93.6 155 35.5
EL10Ac6g15582 Beta vulgaris HOM05D006441 ORTHO05D008203 2.6e-17 92.8 82 57.3
Zm00001eb055970 Zea mays HOM05D006441 ORTHO05D008203 2.6e-17 92.8 105 46.7
CANSAT01G2889 Cannabis sativa HOM05D006441 ORTHO05D008203 4.4e-17 92.0 50 84.0
BcaB08g36690 Brassica carinata HOM05D006441 ORTHO05D008203 7.5e-17 91.3 62 71.0
PSO675G4807 Papaver somniferum HOM05D006441 ORTHO05D008203 9.8e-17 90.9 135 41.5
Ah.03g140760 Amaranthus hybridus HOM05D006441 ORTHO05D008203 3.7e-16 89.0 88 54.5
ATR0019G023 Amborella trichopoda HOM05D006441 ORTHO05D008203 3.7e-16 89.0 90 50.0
PSO541G6514 Papaver somniferum HOM05D006441 ORTHO05D008203 1.1e-15 87.4 135 40.0
vmacro05378 Vaccinium macrocarpon HOM05D006441 ORTHO05D008203 1.8e-15 86.7 82 53.7
Os03g0727900 Oryza sativa ssp. japonica HOM05D006441 ORTHO05D008203 1.6e-14 83.6 66 60.6
THA.LOC104810646 Tarenaya hassleriana HOM05D006441 ORTHO05D008203 2.0e-14 83.2 45 77.8
SEGI_39991 Sequoiadendron giganteum HOM05D006441 ORTHO05D008203 4.5e-14 82.0 134 39.6
Peaxi162Scf00096g01848 Petunia axillaris HOM05D006441 ORTHO05D008203 2.5e-12 76.3 58 65.5
BcaB04g19401 Brassica carinata HOM05D006441 ORTHO05D008203 9.5e-12 74.3 50 72.0
Lj4A166T80 Lonicera japonica HOM05D006441 ORTHO05D008203 2.7e-11 72.8 137 37.2
unitig_899.g14592 Utricularia gibba HOM05D006441 ORTHO05D008203 8.0e-11 71.2 55 61.8
ECA246G2498 Erigeron canadensis HOM05D006441 ORTHO05D008203 4.1e-07 58.9 99 38.4
Mapoly0061s0091 Marchantia polymorpha HOM05D006441 ORTHO05D008203 4.5e-06 55.5 81 45.7


User provided reference genes

Program Settings