Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.6e-57 225.3 125 100.0
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.6e-57 225.3 125 100.0
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.6e-57 225.3 125 100.0
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.4e-55 219.5 124 98.4
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.4e-55 218.8 121 100.0
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 2.2e-45 185.7 107 97.2
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.2e-41 173.3 125 74.4
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 2.6e-41 172.2 125 78.4
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 5.9e-38 161.0 125 72.8
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 1.1e-31 140.2 97 74.2
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 2.7e-22 109.0 92 60.9
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 6.0e-22 107.8 92 59.8
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 3.9e-21 105.1 125 52.8
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 3.9e-21 105.1 90 63.3
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 5.6e-20 101.3 87 60.9
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.6e-19 99.8 127 49.6
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 4.7e-19 98.2 125 52.0
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 1.8e-18 96.3 96 60.4
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.2e-17 93.6 88 58.0
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 1.2e-17 93.6 131 48.9
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 1.5e-17 93.2 94 57.4
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 1.5e-17 93.2 94 57.4
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 2.0e-17 92.8 126 50.0
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.0e-17 92.8 127 51.2
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 2.6e-17 92.4 94 56.4
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.4e-17 92.0 127 51.2
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 5.8e-17 91.3 98 55.1
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 7.5e-17 90.9 127 50.4
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 7.5e-17 90.9 127 50.4
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 2.2e-16 89.4 125 45.6
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 2.9e-16 89.0 124 41.9
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 2.9e-16 89.0 124 41.9
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 4.9e-16 88.2 96 50.0
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 6.4e-16 87.8 93 54.8
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.1e-15 87.0 95 54.7
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 1.9e-15 86.3 91 52.7
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 7.0e-15 84.3 124 41.9
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 1.2e-14 83.6 103 50.5
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.6e-14 83.2 95 52.6
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.6e-14 83.2 95 52.6
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 1.6e-14 83.2 91 56.0
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 2.1e-14 82.8 89 53.9
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 2.1e-14 82.8 129 44.2
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 2.7e-14 82.4 94 51.1
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 3.5e-14 82.0 145 42.1
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.6e-14 81.6 96 51.0
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 4.6e-14 81.6 137 48.9
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 6.0e-14 81.3 138 50.0
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 1.7e-13 79.7 103 49.5
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 3.9e-13 78.6 88 48.9
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 3.9e-13 78.6 93 46.2
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 5.1e-13 78.2 97 47.4
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 6.6e-13 77.8 122 46.7
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 6.6e-13 77.8 122 46.7
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.5e-12 76.6 90 55.6
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 2.5e-12 75.9 90 52.2
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 4.3e-12 75.1 94 53.2
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 4.3e-12 75.1 128 43.0
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.3e-12 75.1 120 40.0
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 7.3e-12 74.3 101 48.5
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 9.5e-12 73.9 129 41.1
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 1.2e-11 73.6 129 44.2
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 1.6e-11 73.2 94 46.8
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.1e-11 72.8 125 39.2
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.1e-11 72.8 91 46.2
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 2.1e-11 72.8 91 46.2
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 2.1e-11 72.8 127 44.1
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.8e-11 72.4 97 46.4
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 3.6e-11 72.0 91 44.0
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.4e-10 70.1 94 47.9
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.4e-10 70.1 102 47.1
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 1.4e-10 70.1 94 44.7
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 4.0e-10 68.6 62 56.5
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 5.2e-10 68.2 98 45.9
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 6.8e-10 67.8 97 46.4
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 6.8e-10 67.8 97 46.4
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 6.8e-10 67.8 97 46.4
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 6.8e-10 67.8 107 40.2
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 8.9e-10 67.4 130 44.6
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 8.9e-10 67.4 102 44.1
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.2e-09 67.0 98 44.9
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 1.2e-09 67.0 109 44.0
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 1.2e-09 67.0 105 40.0
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 1.2e-09 67.0 79 49.4
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.5e-09 66.6 95 46.3
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 2.0e-09 66.2 127 39.4
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 3.4e-09 65.5 98 43.9
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.4e-09 65.5 97 43.3
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 4.4e-09 65.1 95 47.4
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 5.8e-09 64.7 91 47.3
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 7.5e-09 64.3 134 44.0
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 9.9e-09 63.9 96 46.9
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 9.9e-09 63.9 103 42.7
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 9.9e-09 63.9 106 42.5
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 1.3e-08 63.5 103 42.7
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 1.3e-08 63.5 125 40.8
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.3e-08 63.5 95 44.2
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 1.7e-08 63.2 101 42.6
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 1.7e-08 63.2 101 42.6
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 3.7e-08 62.0 101 42.6
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 3.7e-08 62.0 75 49.3
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 3.7e-08 62.0 88 43.2
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 3.7e-08 62.0 114 41.2
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 3.7e-08 62.0 105 42.9
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 4.9e-08 61.6 88 48.9
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 4.9e-08 61.6 89 43.8
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 4.9e-08 61.6 88 43.2
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 8.3e-08 60.8 88 48.9
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 8.3e-08 60.8 88 48.9
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.9e-07 59.7 97 45.4
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 1.9e-07 59.7 88 47.7
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 1.9e-07 59.7 88 46.6
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 1.9e-07 59.7 103 39.8
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 2.4e-07 59.3 103 40.8
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 2.4e-07 59.3 97 41.2
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 4.1e-07 58.5 81 46.9
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 4.1e-07 58.5 101 39.6
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 5.4e-07 58.2 107 39.3
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 5.4e-07 58.2 105 41.0
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 5.4e-07 58.2 93 43.0
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 9.2e-07 57.4 90 43.3
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 4.6e-06 55.1 92 44.6
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 4.6e-06 55.1 92 39.1
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 7.8e-06 54.3 83 44.6


User provided reference genes

Program Settings