Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 1.4e-137 493.0 259 100.0
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 9.2e-102 374.0 214 93.9
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 7.8e-93 344.4 214 85.5
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 3.1e-73 279.3 214 71.0
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 8.4e-71 271.2 219 68.5
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 3.2e-70 269.2 202 72.3
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 4.2e-70 268.9 215 71.2
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 4.6e-69 265.4 203 72.4
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 6.0e-69 265.0 205 69.3
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 1.0e-68 264.2 218 67.9
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 1.3e-68 263.8 204 70.1
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 2.3e-68 263.1 214 66.8
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 2.3e-68 263.1 211 69.2
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 6.7e-68 261.5 206 68.9
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 6.7e-68 261.5 204 70.6
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 6.7e-68 261.5 205 68.3
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 8.7e-68 261.2 205 68.8
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 2.5e-67 259.6 197 72.1
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 3.3e-67 259.2 205 69.3
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 4.3e-67 258.8 197 70.6
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 4.3e-67 258.8 195 70.8
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 5.6e-67 258.5 196 71.9
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 5.6e-67 258.5 215 67.0
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.6e-67 258.5 199 69.3
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 9.6e-67 257.7 209 68.9
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.3e-66 257.3 204 69.6
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 1.3e-66 257.3 212 66.0
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.6e-66 256.9 187 71.7
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 1.6e-66 256.9 215 68.4
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 2.8e-66 256.1 191 71.7
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 3.7e-66 255.8 205 66.8
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 4.8e-66 255.4 211 68.2
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 4.8e-66 255.4 213 66.2
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 1.4e-65 253.8 205 66.8
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 1.4e-65 253.8 194 70.6
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 1.8e-65 253.4 183 73.2
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 1.8e-65 253.4 205 66.8
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 3.1e-65 252.7 199 71.9
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 5.3e-65 251.9 214 63.1
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 9.0e-65 251.1 214 63.1
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 9.0e-65 251.1 194 70.1
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 1.2e-64 250.8 205 65.9
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.5e-64 250.4 214 62.6
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 2.6e-64 249.6 192 69.3
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 2.6e-64 249.6 210 65.7
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 3.4e-64 249.2 211 63.5
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 1.0e-63 247.7 188 68.1
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 1.3e-63 247.3 190 68.4
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 1.3e-63 247.3 189 72.5
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 3.8e-63 245.7 204 64.7
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 6.5e-63 245.0 190 67.4
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 6.5e-63 245.0 196 65.8
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 1.1e-62 244.2 191 68.1
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 4.2e-62 242.3 214 62.1
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 4.2e-62 242.3 191 68.1
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 9.3e-62 241.1 193 68.4
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 9.3e-62 241.1 137 96.4
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 9.3e-62 241.1 190 68.4
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 1.2e-61 240.7 211 64.9
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 1.6e-61 240.4 220 62.7
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 2.7e-61 239.6 196 66.3
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 4.6e-61 238.8 213 62.4
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.3e-60 237.3 186 70.4
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 5.1e-60 235.3 187 65.2
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 5.1e-60 235.3 200 65.0
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.1e-59 234.2 190 67.9
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 4.3e-59 232.3 200 64.0
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 2.8e-58 229.6 195 65.1
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 2.8e-58 229.6 195 65.1
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 2.8e-58 229.6 195 65.1
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 6.3e-58 228.4 202 63.4
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 6.3e-58 228.4 229 58.1
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 8.2e-58 228.0 191 66.0
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 6.9e-57 224.9 194 62.4
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 1.5e-56 223.8 193 64.2
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 1.5e-56 223.8 214 60.7
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 1.7e-55 220.3 193 63.7
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 1.7e-55 220.3 193 63.7
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 8.5e-55 218.0 181 62.4
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.4e-54 217.2 192 62.0
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.4e-54 217.2 192 62.0
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 1.4e-54 217.2 175 66.3
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 1.4e-54 217.2 180 66.1
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 2.5e-54 216.5 211 57.8
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 5.5e-54 215.3 206 60.7
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 9.4e-54 214.5 192 59.4
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 4.6e-53 212.2 192 62.0
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 1.4e-52 210.7 227 55.1
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 1.5e-51 207.2 208 56.2
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 2.0e-51 206.8 216 55.6
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 3.3e-51 206.1 170 62.4
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 4.3e-51 205.7 187 61.0
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 9.7e-51 204.5 198 56.6
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 9.7e-51 204.5 196 60.2
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.7e-50 203.8 154 66.9
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 2.2e-50 203.4 143 72.0
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 4.8e-50 202.2 209 54.1
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 6.3e-50 201.8 144 68.8
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 6.9e-49 198.4 191 58.6
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 6.9e-49 198.4 209 55.0
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.6e-48 196.4 157 66.2
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.4e-48 196.1 155 68.4
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 5.9e-48 195.3 157 66.2
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 7.7e-48 194.9 142 73.9
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 3.8e-47 192.6 131 75.6
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 8.5e-47 191.4 185 54.6
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 7.9e-45 184.9 255 46.7
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 7.4e-43 178.3 188 54.3
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.4e-41 174.1 199 54.3
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 1.8e-41 173.7 124 69.4
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 1.5e-40 170.6 116 71.6
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 2.6e-40 169.9 153 66.0
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 1.3e-39 167.5 122 68.0
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 3.9e-36 156.0 126 59.5
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.0e-32 143.7 114 66.7
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 6.5e-31 138.7 124 63.7
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 2.1e-29 133.7 108 62.0
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 6.1e-29 132.1 103 68.9
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 8.8e-28 128.3 176 37.5
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.0e-27 127.1 98 69.4
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.8e-26 123.2 100 66.0
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.8e-26 122.5 98 67.3
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 7.7e-24 115.2 123 51.2
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 3.8e-23 112.8 179 36.9
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.1e-22 111.3 149 46.3
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 7.2e-22 108.6 195 35.9
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 2.7e-21 106.7 81 64.2
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 4.0e-20 102.8 99 56.6
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 3.4e-19 99.8 78 65.4
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 4.4e-19 99.4 68 75.0
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 1.7e-18 97.4 153 43.8
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 1.1e-17 94.7 61 70.5
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.6e-16 90.9 72 65.3
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 7.2e-14 82.0 109 37.6
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 2.8e-13 80.1 140 32.9
Eucgr.L03507 Eucalyptus grandis HOM05D005734 ORTHO05D006990 3.3e-06 56.6 84 44.0


User provided reference genes

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