Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 3.2e-84 315.1 161 100.0
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 1.4e-76 289.7 163 92.0
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 1.9e-73 279.3 165 90.3
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 4.8e-56 221.5 158 76.6
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 1.5e-30 136.7 135 54.8
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 3.4e-30 135.6 149 50.3
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 4.5e-30 135.2 156 48.7
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.1e-28 130.6 145 50.3
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 3.2e-28 129.0 144 47.2
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 4.2e-28 128.6 160 48.8
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 4.2e-28 128.6 131 51.1
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 5.5e-28 128.3 129 55.0
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.2e-27 127.1 149 47.7
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 3.6e-27 125.6 145 48.3
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 4.6e-27 125.2 143 46.2
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 7.9e-27 124.4 142 48.6
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 2.3e-26 122.9 134 50.0
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 3.0e-26 122.5 140 47.1
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 5.1e-26 121.7 132 48.5
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 5.1e-26 121.7 131 50.4
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 6.7e-26 121.3 144 50.0
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 6.7e-26 121.3 125 49.6
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.5e-25 119.4 149 45.0
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 7.4e-25 117.9 146 46.6
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 7.4e-25 117.9 146 45.2
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 9.7e-25 117.5 140 47.9
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 1.3e-24 117.1 124 54.8
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 1.7e-24 116.7 169 46.7
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 1.7e-24 116.7 151 46.4
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.7e-24 116.7 148 45.3
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 1.7e-24 116.7 155 45.2
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 1.7e-24 116.7 154 45.5
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 3.7e-24 115.5 154 41.6
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 4.8e-24 115.2 138 48.6
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 4.8e-24 115.2 138 48.6
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 4.8e-24 115.2 146 51.4
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 4.8e-24 115.2 132 49.2
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 8.2e-24 114.4 128 48.4
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 8.2e-24 114.4 128 48.4
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 8.2e-24 114.4 153 45.8
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 8.2e-24 114.4 145 46.2
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.4e-23 113.6 148 43.9
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.4e-23 113.6 146 45.2
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.4e-23 112.8 165 44.2
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 3.1e-23 112.5 147 45.6
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 3.1e-23 112.5 149 45.0
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.1e-23 112.1 151 45.7
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 6.9e-23 111.3 151 45.0
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 9.1e-23 110.9 165 43.0
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 9.1e-23 110.9 146 45.2
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 9.1e-23 110.9 147 46.3
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.2e-22 110.5 151 45.0
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 1.5e-22 110.2 155 46.5
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 2.0e-22 109.8 150 42.7
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 2.6e-22 109.4 152 41.4
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.6e-22 109.4 138 47.8
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 3.4e-22 109.0 129 49.6
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.4e-22 109.0 137 48.2
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 3.4e-22 109.0 126 51.6
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 5.9e-22 108.2 150 45.3
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 5.9e-22 108.2 130 43.8
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 7.7e-22 107.8 146 47.3
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 1.0e-21 107.5 139 43.9
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.0e-21 107.5 141 47.5
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 1.0e-21 107.5 140 45.0
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 1.3e-21 107.1 124 48.4
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 1.3e-21 107.1 131 46.6
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 1.7e-21 106.7 148 42.6
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 1.7e-21 106.7 137 46.7
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 2.2e-21 106.3 135 45.9
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 2.9e-21 105.9 138 44.9
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 2.9e-21 105.9 144 45.8
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 5.0e-21 105.1 144 45.1
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.9e-20 103.2 138 47.1
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 5.5e-20 101.7 135 48.1
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 7.2e-20 101.3 128 45.3
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 1.6e-19 100.1 159 41.5
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.6e-19 100.1 148 42.6
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 2.1e-19 99.8 144 45.1
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 2.1e-19 99.8 147 40.8
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 2.1e-19 99.8 141 42.6
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 7.9e-19 97.8 149 41.6
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 7.9e-19 97.8 140 41.4
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.0e-18 97.4 133 47.4
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 1.4e-18 97.1 149 41.6
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 1.4e-18 97.1 142 42.3
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 1.4e-18 97.1 159 42.1
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 1.4e-18 97.1 123 44.7
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.4e-18 97.1 133 45.1
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.4e-18 97.1 133 45.1
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 1.8e-18 96.7 158 41.8
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 3.0e-18 95.9 88 55.7
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 3.0e-18 95.9 142 40.1
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 1.1e-17 94.0 139 43.9
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 1.1e-17 94.0 144 43.1
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 1.1e-17 94.0 149 40.9
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 1.1e-17 94.0 149 40.9
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 1.1e-17 94.0 130 44.6
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 1.1e-17 94.0 156 38.5
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 2.0e-17 93.2 142 42.3
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 2.6e-17 92.8 142 42.3
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 3.3e-17 92.4 148 41.2
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 3.3e-17 92.4 152 40.1
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 3.3e-17 92.4 142 38.0
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 4.4e-17 92.0 158 39.2
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 4.4e-17 92.0 145 40.7
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 7.4e-17 91.3 139 43.2
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 7.4e-17 91.3 141 44.0
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 7.4e-17 91.3 141 44.0
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 1.3e-16 90.5 148 39.2
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 1.7e-16 90.1 150 42.7
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 1.7e-16 90.1 140 41.4
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.7e-16 90.1 138 42.0
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 2.2e-16 89.7 124 46.8
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 2.8e-16 89.4 128 42.2
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 2.8e-16 89.4 132 40.9
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 3.7e-16 89.0 146 41.1
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 6.3e-16 88.2 139 38.8
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 6.3e-16 88.2 138 41.3
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 6.3e-16 88.2 139 38.8
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 6.3e-16 88.2 139 38.8
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 1.1e-15 87.4 138 39.9
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 1.4e-15 87.0 132 40.2
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 1.4e-15 87.0 130 41.5
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 2.4e-15 86.3 152 38.8
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 5.3e-15 85.1 138 39.1
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 9.1e-15 84.3 152 37.5
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 5.9e-14 81.6 79 53.2
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 1.0e-13 80.9 139 38.8
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.2e-13 79.7 123 37.4
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 3.6e-11 72.4 94 42.6
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 6.7e-10 68.2 57 57.9
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 1.5e-09 67.0 144 31.2
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 1.7e-08 63.5 45 57.8
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 2.2e-08 63.2 151 31.8
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 3.7e-08 62.4 91 44.0
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 3.7e-08 62.4 138 31.9
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 1.1e-07 60.8 137 33.6
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 1.1e-07 60.8 67 50.7
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 1.8e-07 60.1 121 32.2
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.4e-07 59.7 152 31.6
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 4.1e-07 58.9 108 38.0
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 4.1e-07 58.9 80 41.2
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 4.1e-07 58.9 119 33.6
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 4.1e-07 58.9 152 33.6
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 4.1e-07 58.9 92 41.3
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 4.1e-07 58.9 127 31.5
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 5.3e-07 58.5 85 38.8
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 7.0e-07 58.2 163 30.1
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 7.0e-07 58.2 110 31.8
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 7.0e-07 58.2 98 34.7
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 9.1e-07 57.8 130 29.2
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 1.2e-06 57.4 76 43.4
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 1.2e-06 57.4 76 43.4
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 1.2e-06 57.4 159 31.4
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.6e-06 57.0 159 28.3
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 2.0e-06 56.6 76 43.4
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 3.5e-06 55.8 166 31.9
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 4.5e-06 55.5 156 31.4
Lj8P558T18 Lonicera japonica HOM05D012621 ORTHO05D004349 4.5e-06 55.5 85 36.5
Zm00001eb126760 Zea mays HOM05D041344 ORTHO05D037183 4.5e-06 55.5 149 30.2
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 5.9e-06 55.1 90 37.8
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 5.9e-06 55.1 96 36.5
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 7.7e-06 54.7 158 30.4
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 7.7e-06 54.7 94 37.2


User provided reference genes

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