Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 3.1e-162 575.1 294 100.0
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 7.2e-119 431.0 348 67.8
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 5.2e-117 424.9 347 67.7
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 8.3e-99 364.4 380 58.2
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 1.6e-65 253.8 293 54.3
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 7.6e-60 235.0 301 50.2
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 6.7e-56 221.9 301 48.8
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 9.0e-53 211.5 306 47.7
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 1.5e-52 210.7 300 48.0
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 2.6e-52 209.9 293 45.1
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 3.8e-51 206.1 310 46.5
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 8.4e-51 204.9 297 47.1
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 8.4e-51 204.9 310 45.8
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.4e-50 203.4 297 46.1
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 3.2e-50 203.0 294 45.6
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.5e-50 202.2 301 46.8
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 9.3e-50 201.4 303 45.5
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 1.6e-49 200.7 297 45.1
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 2.7e-49 199.9 298 47.0
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 3.5e-49 199.5 294 44.9
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 6.0e-49 198.7 305 44.6
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 3.0e-48 196.4 292 45.9
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.7e-48 194.9 309 43.0
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 2.5e-47 193.4 294 44.2
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 5.6e-47 192.2 308 42.5
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.6e-46 190.7 282 44.7
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 2.1e-46 190.3 282 45.0
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.8e-46 189.9 282 44.7
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 3.7e-46 189.5 294 43.9
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 6.2e-46 188.7 301 44.5
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.1e-45 188.0 299 42.8
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.4e-45 187.6 297 43.4
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 9.0e-45 184.9 296 43.6
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 2.0e-44 183.7 297 42.8
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 2.0e-44 183.7 321 42.1
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.0e-44 183.7 305 41.6
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 2.0e-44 183.7 293 42.3
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.0e-44 183.7 295 41.7
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 3.4e-44 183.0 293 40.3
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.3e-43 181.0 289 42.2
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 2.9e-43 179.9 313 42.5
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 2.9e-43 179.9 298 40.6
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 2.9e-43 179.9 296 42.6
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 2.9e-43 179.9 293 42.3
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 6.5e-43 178.7 297 41.1
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.5e-43 178.7 289 40.8
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 8.4e-43 178.3 281 42.7
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 2.5e-42 176.8 290 42.8
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 4.2e-42 176.0 293 43.0
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 5.5e-42 175.6 305 38.7
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 5.5e-42 175.6 397 35.3
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 9.3e-42 174.9 330 38.5
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 1.2e-41 174.5 322 38.2
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 1.6e-41 174.1 338 38.8
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.7e-41 173.3 339 41.3
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 2.7e-41 173.3 288 41.0
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 3.5e-41 172.9 281 40.6
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 7.9e-41 171.8 308 40.9
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 7.9e-41 171.8 297 38.4
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.3e-40 170.2 340 39.7
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 3.0e-40 169.9 294 39.5
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 5.1e-40 169.1 290 40.7
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 5.1e-40 169.1 287 41.1
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 8.7e-40 168.3 293 39.9
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.5e-39 166.8 288 41.0
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 3.3e-39 166.4 281 40.2
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 5.7e-39 165.6 249 43.4
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 9.6e-39 164.9 336 38.7
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 1.3e-38 164.5 297 41.8
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 3.7e-38 162.9 250 44.4
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 3.7e-38 162.9 270 39.3
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 4.8e-38 162.5 368 35.1
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 6.3e-38 162.2 381 35.4
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 6.3e-38 162.2 319 36.1
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 8.2e-38 161.8 259 42.5
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 8.2e-38 161.8 286 36.7
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 2.4e-37 160.2 288 40.6
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 5.3e-37 159.1 223 44.4
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 5.3e-37 159.1 238 42.4
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 5.3e-37 159.1 348 36.8
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 9.0e-37 158.3 302 38.4
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.5e-36 157.5 292 39.0
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 1.5e-36 157.5 319 40.8
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.5e-36 157.5 287 38.7
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 2.0e-36 157.1 370 36.5
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.9e-36 155.6 302 39.4
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 5.9e-36 155.6 391 34.3
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 7.6e-36 155.2 314 37.3
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 7.6e-36 155.2 279 36.6
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 1.0e-35 154.8 162 54.3
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 1.0e-35 154.8 353 38.0
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.7e-35 154.1 291 39.9
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 1.7e-35 154.1 320 37.2
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.2e-35 153.7 155 57.4
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.2e-35 153.7 155 57.4
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 2.2e-35 153.7 290 35.9
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 5.0e-35 152.5 319 36.7
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 1.4e-34 151.0 170 50.0
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.2e-34 149.8 375 36.3
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.2e-33 147.9 157 53.5
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 7.9e-33 145.2 353 37.1
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.0e-32 144.8 306 37.9
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.0e-32 144.8 155 52.9
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 6.7e-32 142.1 301 35.2
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.5e-31 141.0 374 34.0
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 2.5e-31 140.2 296 36.5
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 2.5e-31 140.2 295 36.9
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 4.3e-31 139.4 283 39.6
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 5.7e-31 139.0 255 42.0
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 7.4e-31 138.7 256 38.7
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 9.7e-31 138.3 257 39.7
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 2.8e-30 136.7 157 50.3
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 6.3e-30 135.6 348 32.8
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 8.2e-30 135.2 255 39.6
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 8.2e-30 135.2 331 34.1
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 1.4e-29 134.4 259 37.8
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 1.4e-29 134.4 259 37.8
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 1.4e-29 134.4 253 42.3
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 3.1e-29 133.3 235 40.4
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 2.6e-28 130.2 257 40.1
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 1.7e-27 127.5 228 41.7
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 2.2e-27 127.1 254 39.4
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 5.0e-27 125.9 222 40.1
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 6.5e-27 125.6 293 36.2
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 6.5e-27 125.6 254 39.4
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 6.5e-27 125.6 254 39.4
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 8.5e-27 125.2 287 34.8
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 3.2e-26 123.2 240 35.8
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 3.2e-26 123.2 162 49.4
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 5.5e-26 122.5 218 40.4
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 7.2e-26 122.1 257 37.7
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 1.6e-25 120.9 218 39.4
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 2.7e-25 120.2 205 40.5
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 3.6e-25 119.8 206 41.7
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 3.6e-25 119.8 214 41.1
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 3.6e-25 119.8 301 33.2
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 7.9e-25 118.6 239 36.0
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 1.8e-24 117.5 102 59.8
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.8e-24 117.5 259 37.8
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 6.7e-24 115.5 267 33.7
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 5.7e-23 112.5 394 27.7
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.7e-22 109.8 179 42.5
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 6.3e-22 109.0 153 41.2
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 5.3e-21 105.9 278 35.3
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.2e-20 104.8 236 36.0
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 2.2e-19 100.5 189 34.9
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.6e-17 93.2 121 44.6
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.0e-15 87.4 88 48.9
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 6.3e-14 82.4 222 33.8
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 5.3e-13 79.3 248 29.8
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.0e-12 77.4 95 49.5
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 5.9e-12 75.9 106 42.5
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 7.2e-10 68.9 319 25.4
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 1.2e-09 68.2 97 47.4
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 3.6e-09 66.6 60 58.3
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 4.7e-09 66.2 127 34.6
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.4e-08 64.7 65 49.2
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 4.0e-08 63.2 78 41.0
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 5.2e-08 62.8 52 55.8
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 6.7e-08 62.4 299 27.4
arahy.Tifrunner.gnm1.ann1.ZI9W5R Arachis hypogaea HOM05D004296 ORTHO05D005045 7.5e-07 58.9 149 33.6


User provided reference genes

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