Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 4.3e-186 654.4 318 100.0
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 1.4e-123 446.8 288 78.5
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 2.2e-121 439.5 288 77.8
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 6.4e-113 411.4 288 73.6
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 5.9e-74 282.0 186 72.6
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 1.1e-72 277.7 291 52.6
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 1.4e-72 277.3 291 53.6
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 3.2e-72 276.2 293 52.6
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 6.1e-71 271.9 186 68.8
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 1.4e-70 270.8 186 69.9
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 1.8e-70 270.4 293 52.2
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.8e-70 270.4 267 53.9
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 1.7e-68 263.8 186 66.7
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 1.7e-68 263.8 186 66.7
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 2.2e-68 263.5 194 66.0
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 2.2e-68 263.5 283 51.6
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 4.8e-68 262.3 271 54.2
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 4.8e-68 262.3 279 50.5
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.8e-67 260.4 194 65.5
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 2.4e-67 260.0 186 66.1
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 3.1e-67 259.6 295 50.5
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 4.1e-67 259.2 186 65.6
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 4.1e-67 259.2 270 51.1
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 5.3e-67 258.8 238 55.0
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 5.3e-67 258.8 263 51.0
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 9.1e-67 258.1 186 65.6
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 9.1e-67 258.1 186 65.6
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 2.0e-66 256.9 273 51.3
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 2.0e-66 256.9 279 49.1
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 3.4e-66 256.1 186 66.1
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 5.9e-66 255.4 186 65.6
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 5.9e-66 255.4 263 50.6
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 5.9e-66 255.4 272 52.9
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.7e-65 253.8 270 54.1
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 2.2e-65 253.4 186 64.0
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 2.2e-65 253.4 186 65.1
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 2.9e-65 253.1 239 55.2
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 5.0e-65 252.3 186 63.4
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 6.5e-65 251.9 186 61.8
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 6.5e-65 251.9 186 64.5
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 8.5e-65 251.5 262 52.3
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 1.9e-64 250.4 276 50.7
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 2.5e-64 250.0 186 61.8
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 3.2e-64 249.6 175 64.0
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 5.5e-64 248.8 186 62.4
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 7.2e-64 248.4 281 48.8
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 9.4e-64 248.1 186 62.9
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 4.7e-63 245.7 186 62.4
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 1.8e-62 243.8 186 61.3
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 2.3e-62 243.4 246 52.4
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 5.1e-62 242.3 186 61.8
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 6.7e-62 241.9 238 51.7
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 8.8e-62 241.5 173 63.6
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 8.8e-62 241.5 187 61.5
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 8.8e-62 241.5 187 61.5
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 2.0e-61 240.4 264 53.0
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 2.6e-61 240.0 175 61.7
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 2.6e-61 240.0 186 61.8
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 3.3e-61 239.6 175 63.4
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 7.4e-61 238.4 186 61.3
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 2.2e-60 236.9 175 61.1
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 2.2e-60 236.9 187 60.4
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 2.8e-60 236.5 175 60.0
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 2.8e-60 236.5 175 60.0
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 3.7e-60 236.1 180 61.7
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 3.7e-60 236.1 175 61.1
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 8.2e-60 235.0 175 60.6
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 8.2e-60 235.0 175 60.6
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 1.1e-59 234.6 186 62.9
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 2.4e-59 233.4 186 59.7
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 2.4e-59 233.4 164 66.5
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 2.6e-58 229.9 254 51.2
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.0e-57 228.0 181 64.1
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 1.4e-56 224.2 264 50.8
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 9.4e-56 221.5 171 61.4
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 1.2e-55 221.1 242 53.3
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.0e-54 218.0 242 52.5
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 8.8e-54 214.9 242 51.7
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 2.8e-52 209.9 186 53.2
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 1.1e-51 208.0 157 64.3
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 2.4e-51 206.8 204 54.9
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 2.0e-50 203.8 180 56.7
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 2.6e-50 203.4 260 46.5
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.0e-49 201.4 179 55.9
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 1.0e-49 201.4 186 52.2
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 1.7e-49 200.7 186 53.2
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 8.5e-49 198.4 304 38.8
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 1.1e-48 198.0 217 48.4
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 8.8e-46 188.3 186 45.7
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 2.6e-45 186.8 134 63.4
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 9.7e-45 184.9 183 45.9
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 7.0e-43 178.7 212 47.6
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 1.6e-42 177.6 159 56.6
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.7e-41 174.1 132 62.1
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 4.8e-36 156.0 112 65.2
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 1.2e-34 151.4 124 58.1
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 8.6e-33 145.2 186 44.6
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 6.1e-31 139.0 185 37.3
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 8.3e-28 128.6 185 35.7
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 1.7e-25 120.9 182 36.3
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.8e-22 110.9 124 50.8
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 3.1e-22 110.2 78 62.8
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.7e-20 104.4 76 61.8
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 7.8e-18 95.5 176 29.0
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 1.1e-16 91.7 179 27.4
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 5.6e-16 89.4 167 29.9
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 6.8e-14 82.4 143 31.5
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 1.2e-13 81.6 174 29.3
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 3.2e-11 73.6 46 67.4
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 2.3e-09 67.4 68 54.4
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 6.6e-09 65.9 53 52.8
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.5e-08 64.7 53 52.8
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 1.9e-08 64.3 89 42.7
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 7.3e-08 62.4 164 25.6
AagrBONN_evm.TU.Sc2ySwM_117.2950 Anthoceros agrestis HOM05D006617 ORTHO05D008247 1.2e-07 61.6 147 26.5
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 4.7e-07 59.7 153 26.8
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 4.7e-07 59.7 164 25.0
Ciclev10012522m.g Citrus clementina HOM05D003252 ORTHO05D003640 6.2e-07 59.3 179 24.0
PGR044G0627 Punica granatum HOM05D003252 ORTHO05D003640 3.1e-06 57.0 164 23.8
SMO307G0050 Selaginella moellendorffii HOM05D037974 ORTHO05D008247 5.2e-06 56.2 165 23.0
Dinv25571 Davidia involucrata HOM05D003252 ORTHO05D003640 6.8e-06 55.8 166 23.5


User provided reference genes

Program Settings