Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 2860.5 1437 100.0
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 2404.4 1330 91.1
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 2121.7 1339 80.6
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 2098.2 1168 90.8
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1545.8 1346 59.9
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1498.0 1346 58.7
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1496.9 1348 58.7
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1480.7 1399 57.5
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1471.8 1350 57.6
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1469.9 1352 58.1
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1451.0 1382 55.8
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1449.9 1392 56.8
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1439.1 1349 57.4
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1434.5 1352 56.5
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1428.7 1348 57.2
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1420.6 1346 56.9
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1414.1 1348 56.7
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1412.9 1350 56.1
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1410.6 1364 55.4
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1408.3 1369 56.0
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1407.5 1360 56.1
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1406.3 1350 56.0
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1401.7 1360 55.6
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1375.1 1452 52.8
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1373.2 1354 54.8
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1369.8 1370 55.2
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1349.7 1345 54.9
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1344.3 1375 53.2
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1339.7 1442 52.4
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1335.1 1422 53.0
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1317.0 1367 52.9
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1312.0 1364 51.8
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1308.1 1351 52.7
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1300.4 1344 52.2
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1298.5 1356 52.1
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1295.8 1343 52.0
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1293.5 1343 52.0
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1289.6 1347 52.0
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1288.1 1347 52.3
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1288.1 1353 52.1
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1286.6 1344 52.2
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1282.7 1350 52.1
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1282.3 1377 50.9
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1282.3 1347 52.1
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1279.6 1374 50.7
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1276.5 1347 52.4
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1276.2 1350 51.6
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1271.5 1344 51.6
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1267.7 1235 55.9
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1266.9 1391 51.2
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1265.0 1348 51.9
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1262.3 1376 51.3
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1261.9 1353 51.3
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1255.7 1384 49.3
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1244.2 1355 50.9
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1243.4 1343 50.9
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1243.0 1351 51.3
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1235.3 1370 50.1
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1234.2 1365 51.0
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1234.2 1378 50.4
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1231.5 1350 51.2
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1231.5 1377 49.5
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1227.6 1365 50.1
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1224.2 1363 50.3
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1220.7 1378 49.9
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1219.9 1345 50.9
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1219.1 1347 49.8
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1218.8 1350 50.7
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1218.8 1350 50.7
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1218.0 1347 50.3
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1213.7 1358 50.4
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1211.4 1368 50.2
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1209.5 1371 50.8
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1204.9 1401 49.3
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1202.2 1370 48.8
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1190.6 1369 47.5
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1187.6 1380 49.3
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1185.6 1361 49.0
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1178.7 1390 48.8
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1176.4 1377 48.3
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1165.2 1375 47.7
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1158.7 1367 48.3
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1153.3 1361 47.9
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1150.2 1363 47.5
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1142.5 1283 50.4
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1129.4 1351 47.1
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1120.1 1363 47.4
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1097.8 1425 45.0
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1082.8 1248 49.7
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 5.7e-310 1068.1 1372 45.9
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 4.2e-289 998.8 1380 42.6
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 1.6e-280 970.3 1351 43.4
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 1.7e-274 950.3 1016 52.9
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 1.4e-271 940.6 1305 43.7
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 5.1e-258 895.6 992 51.1
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.1e-255 887.9 942 50.6
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 1.9e-196 691.0 1444 33.8
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 4.1e-183 646.7 859 43.5
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.7e-150 537.7 1029 34.4
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 4.3e-140 503.8 1346 28.8
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 5.2e-138 496.9 696 42.8
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 4.6e-126 457.2 369 67.2
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 2.9e-120 438.0 366 64.8
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 1.8e-106 392.1 404 53.5
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 6.3e-51 207.6 207 56.0
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.1e-50 205.3 536 28.5
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 3.0e-45 188.7 196 56.6
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 6.6e-24 117.9 89 60.7
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 7.3e-23 114.4 89 62.9
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 7.3e-23 114.4 89 62.9
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 1.2e-22 113.6 81 70.4
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 6.6e-16 91.3 67 73.1
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 5.1e-08 65.1 149 28.9
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 5.6e-07 61.6 46 67.4


User provided reference genes

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