Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G007790 Citrullus lanatus HOM05D064331 ORTHO05D034659 7.7e-58 226.9 109 100.0
ClCG09G017140 Citrullus lanatus HOM05D000034 ORTHO05D034659 2.2e-28 129.0 91 71.4
Rhsim03G0151700 Rhododendron simsii HOM05D000114 ORTHO05D000037 6.6e-17 90.9 117 41.9
Sed0001448 Sechium edule HOM05D000034 ORTHO05D000037 6.6e-17 90.9 79 60.8
Sed0014053 Sechium edule HOM05D000034 ORTHO05D000037 1.9e-16 89.4 79 59.5
Sed0003641 Sechium edule HOM05D000034 ORTHO05D000037 3.3e-16 88.6 79 59.5
CSS0041293 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 2.1e-15 85.9 118 41.5
CSS0004838 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 8.0e-15 84.0 118 39.8
Rhsim12G0067000 Rhododendron simsii HOM05D000034 ORTHO05D000037 8.0e-15 84.0 106 41.5
TAR080G0001 Trochodendron aralioides HOM05D000034 ORTHO05D000037 1.0e-14 83.6 122 41.0
Sed0005979 Sechium edule HOM05D000034 ORTHO05D000037 1.8e-14 82.8 98 48.0
CSS0001254 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 2.3e-14 82.4 106 41.5
CSS0010359 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 4.0e-14 81.6 118 39.8
CSS0001522 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 6.8e-14 80.9 118 39.8
CSS0002925 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 6.8e-14 80.9 118 39.8
CSS0009060 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 6.8e-14 80.9 118 39.8
CSS0015900 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 6.8e-14 80.9 118 39.8
CSS0032587 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 6.8e-14 80.9 118 39.8
CSS0037429 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 3.4e-13 78.6 118 39.0
Rhsim04G0134000 Rhododendron simsii HOM05D000034 ORTHO05D000037 1.3e-12 76.6 91 45.1
CANSAT25G1047 Cannabis sativa HOM05D000034 ORTHO05D000037 1.1e-11 73.6 97 38.1
CSS0041691 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 4.1e-11 71.6 89 42.7
CANSAT01G0970 Cannabis sativa HOM05D000034 ORTHO05D000037 5.4e-11 71.2 124 34.7
CANSAT54G0349 Cannabis sativa HOM05D000034 ORTHO05D000037 5.4e-11 71.2 124 34.7
CANSAT25G2314 Cannabis sativa HOM05D000034 ORTHO05D000037 9.2e-11 70.5 115 34.8
TAR555G0001 Trochodendron aralioides HOM05D000034 ORTHO05D000037 6.0e-10 67.8 115 31.3
TWI34G1639 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 1.7e-09 66.2 122 32.8
TWI36G1086 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 5.0e-09 64.7 122 31.1
LjContig00141g0023111 Lotus japonicus HOM05D000034 ORTHO05D000037 8.6e-09 63.9 92 37.0
TPR.G31033 Trifolium pratense HOM05D000034 ORTHO05D000037 1.5e-08 63.2 90 38.9
TWI23G0109 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 1.9e-08 62.8 129 34.1
arahy.Tifrunner.gnm1.ann1.6EI20W Arachis hypogaea HOM05D000034 ORTHO05D000037 2.5e-08 62.4 70 41.4
TWI74G1293 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 3.3e-08 62.0 100 35.0
Lj2g0024330 Lotus japonicus HOM05D000034 ORTHO05D000037 4.3e-08 61.6 127 33.1
Aqoxy5G02831 Aquilegia oxysepala HOM05D000034 ORTHO05D000037 5.6e-08 61.2 91 38.5
CANSAT25G1749 Cannabis sativa HOM05D000034 ORTHO05D000037 5.6e-08 61.2 90 34.4
FvH4_4g20922 Fragaria vesca HOM05D000034 ORTHO05D000037 5.6e-08 61.2 118 31.4
FvH4_5g23912 Fragaria vesca HOM05D000034 ORTHO05D000037 5.6e-08 61.2 118 31.4
Lj3g0012180 Lotus japonicus HOM05D000034 ORTHO05D000037 5.6e-08 61.2 79 38.0
TWI73G0374 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 7.3e-08 60.8 100 34.0
CANSAT25G0317 Cannabis sativa HOM05D000034 ORTHO05D000037 9.5e-08 60.5 119 29.4
FvH4_4g30624 Fragaria vesca HOM05D000034 ORTHO05D000037 9.5e-08 60.5 97 33.0
Lj1g0002194 Lotus japonicus HOM05D000034 ORTHO05D000037 9.5e-08 60.5 91 38.5
Lj6g0006348 Lotus japonicus HOM05D000034 ORTHO05D000037 9.5e-08 60.5 91 38.5
PSO675G3384 Papaver somniferum HOM05D000034 ORTHO05D000037 1.2e-07 60.1 87 39.1
Atru.chr1.2793 Acer truncatum HOM05D000034 ORTHO05D000037 1.6e-07 59.7 113 31.0
Atru.chr13.2003 Acer truncatum HOM05D000034 ORTHO05D000037 1.6e-07 59.7 113 31.9
CANSAT25G0660 Cannabis sativa HOM05D000665 ORTHO05D000921 1.6e-07 59.7 56 39.3
arahy.Tifrunner.gnm1.ann1.5VN1MT Arachis hypogaea HOM05D000034 ORTHO05D000037 2.1e-07 59.3 101 34.7
FvH4_3g29911 Fragaria vesca HOM05D000034 ORTHO05D000037 2.1e-07 59.3 125 28.8
FvH4_3g21471 Fragaria vesca HOM05D000034 ORTHO05D000285 2.8e-07 58.9 97 32.0
PSO732G0275 Papaver somniferum HOM05D000034 ORTHO05D000037 2.8e-07 58.9 87 37.9
arahy.Tifrunner.gnm1.ann1.WZP6LC Arachis hypogaea HOM05D000034 ORTHO05D000037 4.7e-07 58.2 113 31.9
CANSAT56G4166 Cannabis sativa HOM05D000034 ORTHO05D000037 4.7e-07 58.2 119 28.6
PSO782G4903 Papaver somniferum HOM05D000034 ORTHO05D000037 4.7e-07 58.2 118 33.1
arahy.Tifrunner.gnm1.ann1.NV9TN2 Arachis hypogaea HOM05D000034 ORTHO05D000037 6.2e-07 57.8 101 33.7
AUR62009279 Chenopodium quinoa HOM05D000034 ORTHO05D000037 6.2e-07 57.8 90 38.9
FvH4_6g30381 Fragaria vesca HOM05D000034 ORTHO05D000037 6.2e-07 57.8 88 37.5
PSO063G3806 Papaver somniferum HOM05D000034 ORTHO05D000037 6.2e-07 57.8 87 37.9
TWI38G1947 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 6.2e-07 57.8 90 33.3
arahy.Tifrunner.gnm1.ann1.6D5SIE Arachis hypogaea HOM05D000034 ORTHO05D000037 8.0e-07 57.4 114 30.7
arahy.Tifrunner.gnm1.ann1.Z5ZQ3Q Arachis hypogaea HOM05D000034 ORTHO05D000037 8.0e-07 57.4 114 30.7
SHI51617 Sapria himalayana HOM05D000034 ORTHO05D000037 8.0e-07 57.4 70 41.4
TWI63G0950 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 8.0e-07 57.4 121 33.1
arahy.Tifrunner.gnm1.ann1.8YPI5A Arachis hypogaea HOM05D000034 ORTHO05D000037 1.1e-06 57.0 113 31.0
arahy.Tifrunner.gnm1.ann1.HDS2CW Arachis hypogaea HOM05D000034 ORTHO05D000037 1.1e-06 57.0 114 30.7
Lj1g0006711 Lotus japonicus HOM05D000034 ORTHO05D000037 1.1e-06 57.0 46 45.7
Oeu059140.1 Olea europaea HOM05D000034 ORTHO05D000037 1.1e-06 57.0 87 37.9
PGR102G0003 Punica granatum HOM05D000034 ORTHO05D000037 1.1e-06 57.0 123 31.7
SHI00667 Sapria himalayana HOM05D000034 ORTHO05D000037 1.1e-06 57.0 110 30.9
TPR.G21292 Trifolium pratense HOM05D000034 ORTHO05D014074 1.1e-06 57.0 118 32.2
FvH4_1g10461 Fragaria vesca HOM05D000034 ORTHO05D000037 1.4e-06 56.6 125 28.8
CANSAT01G2537 Cannabis sativa HOM05D000034 ORTHO05D000037 1.8e-06 56.2 96 30.2
CANSAT01G2719 Cannabis sativa HOM05D000034 ORTHO05D000037 1.8e-06 56.2 96 30.2
CANSAT64G2926 Cannabis sativa HOM05D000034 ORTHO05D000037 1.8e-06 56.2 96 30.2
PSO017G6925 Papaver somniferum HOM05D000034 ORTHO05D000037 1.8e-06 56.2 87 37.9
PSO170G6048 Papaver somniferum HOM05D000034 ORTHO05D000037 1.8e-06 56.2 90 31.1
PSO339G5100 Papaver somniferum HOM05D000034 ORTHO05D000037 1.8e-06 56.2 87 37.9
PSO455G0007 Papaver somniferum HOM05D000034 ORTHO05D000037 1.8e-06 56.2 90 31.1
PSO541G3789 Papaver somniferum HOM05D000034 ORTHO05D000037 1.8e-06 56.2 87 37.9
PSO782G5727 Papaver somniferum HOM05D000034 ORTHO05D000037 1.8e-06 56.2 87 37.9
CANSAT11G0430 Cannabis sativa HOM05D000034 ORTHO05D000037 2.3e-06 55.8 87 33.3
CANSAT21G2391 Cannabis sativa HOM05D000034 ORTHO05D000037 2.3e-06 55.8 119 28.6
CANSAT78G1769 Cannabis sativa HOM05D000034 ORTHO05D000037 2.3e-06 55.8 97 30.9
MELO3C035142.2 Cucumis melo HOM05D064331 ORTHO05D034659 2.3e-06 55.8 33 63.6
Lj1g0024931 Lotus japonicus HOM05D000034 ORTHO05D000037 2.3e-06 55.8 46 47.8
Lj3g0012091 Lotus japonicus HOM05D000034 ORTHO05D000037 2.3e-06 55.8 46 47.8
Rhsim06G0023900 Rhododendron simsii HOM05D000034 ORTHO05D000037 2.3e-06 55.8 96 34.4
Solyc10g049530.3 Solanum lycopersicum HOM05D000034 ORTHO05D000037 2.3e-06 55.8 89 30.3
TWI56G0722 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 2.3e-06 55.8 90 35.6
arahy.Tifrunner.gnm1.ann1.GL17HH Arachis hypogaea HOM05D000034 ORTHO05D000037 3.1e-06 55.5 92 37.0
arahy.Tifrunner.gnm1.ann1.Z2QP4M Arachis hypogaea HOM05D000034 ORTHO05D000037 3.1e-06 55.5 90 35.6
AUR62039525 Chenopodium quinoa HOM05D000034 ORTHO05D000037 3.1e-06 55.5 133 30.8
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 4.0e-06 55.1 89 31.5
PSO063G2661 Papaver somniferum HOM05D000034 ORTHO05D000037 4.0e-06 55.1 118 32.2
PSO210G1286 Papaver somniferum HOM05D000034 ORTHO05D000037 4.0e-06 55.1 82 39.0
TWI09G1151 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 4.0e-06 55.1 102 33.3
TWI15G1167 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 4.0e-06 55.1 88 36.4
TWI38G1809 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 4.0e-06 55.1 112 33.9
Atru.chr7.239 Acer truncatum HOM05D000034 ORTHO05D000037 5.2e-06 54.7 90 32.2
arahy.Tifrunner.gnm1.ann1.JE1DTX Arachis hypogaea HOM05D000034 ORTHO05D000037 5.2e-06 54.7 101 32.7
CANSAT78G0143 Cannabis sativa HOM05D000034 ORTHO05D000037 5.2e-06 54.7 119 27.7
LjContig00272g0009285 Lotus japonicus HOM05D000034 ORTHO05D000037 5.2e-06 54.7 89 37.1
Prupe.6G192900 Prunus persica HOM05D000034 ORTHO05D000037 5.2e-06 54.7 87 37.9
RcHm_v2.0_Chr2g0103971 Rosa chinensis HOM05D000034 ORTHO05D000037 5.2e-06 54.7 124 25.8
TWI60G0194 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 5.2e-06 54.7 88 33.0
Atru.chr1.2563 Acer truncatum HOM05D000034 ORTHO05D000037 6.8e-06 54.3 83 33.7
arahy.Tifrunner.gnm1.ann1.UAQH0I Arachis hypogaea HOM05D000034 ORTHO05D000037 6.8e-06 54.3 114 29.8
PGR031G3580 Punica granatum HOM05D000034 ORTHO05D000037 6.8e-06 54.3 89 33.7
PGR042G3315 Punica granatum HOM05D000034 ORTHO05D000037 6.8e-06 54.3 89 33.7
PGR044G0928 Punica granatum HOM05D000034 ORTHO05D000037 6.8e-06 54.3 89 33.7
PGR142G1558 Punica granatum HOM05D000034 ORTHO05D000037 6.8e-06 54.3 89 33.7
Rhsim09G0017200 Rhododendron simsii HOM05D000034 ORTHO05D000037 6.8e-06 54.3 90 35.6
Gorai.013G191100 Gossypium raimondii HOM05D000034 ORTHO05D000037 8.9e-06 53.9 73 41.1
PSO541G3074 Papaver somniferum HOM05D000034 ORTHO05D000037 8.9e-06 53.9 87 36.8
PGR044G0068 Punica granatum HOM05D000034 ORTHO05D000037 8.9e-06 53.9 89 33.7
PGR102G2747 Punica granatum HOM05D000034 ORTHO05D000037 8.9e-06 53.9 89 33.7
PGR119G1562 Punica granatum HOM05D000034 ORTHO05D000037 8.9e-06 53.9 96 31.2
Solyc12g150115.1 Solanum lycopersicum HOM05D000034 ORTHO05D000037 8.9e-06 53.9 89 29.2


User provided reference genes

Program Settings