Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 6.4e-263 910.2 461 100.0
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 3.8e-231 804.7 459 89.5
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 1.3e-228 796.2 460 89.6
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 3.5e-205 718.4 461 80.0
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 9.8e-139 497.7 412 63.6
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.6e-136 490.3 390 66.2
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 7.8e-136 488.0 443 58.7
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 7.8e-136 488.0 401 63.3
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 1.7e-135 486.9 458 58.1
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 3.9e-135 485.7 478 57.7
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 5.1e-135 485.3 448 58.3
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 1.1e-134 484.2 438 58.9
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 2.5e-134 483.0 394 62.9
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 7.3e-134 481.5 466 58.4
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 1.2e-133 480.7 442 58.4
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 4.0e-132 475.7 460 57.6
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 5.2e-132 475.3 376 64.1
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 2.0e-131 473.4 470 57.7
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 1.7e-130 470.3 463 55.7
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 2.9e-130 469.5 381 62.7
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 4.9e-130 468.8 449 57.2
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 1.9e-129 466.8 359 64.6
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.2e-129 466.1 357 65.0
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.2e-129 466.1 357 65.0
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 1.0e-127 461.1 361 64.8
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 8.6e-127 458.0 537 51.4
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 1.1e-126 457.6 372 61.6
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 5.6e-126 455.3 398 58.8
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 5.6e-126 455.3 359 64.9
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 9.6e-126 454.5 374 62.8
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 2.1e-125 453.4 363 64.5
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 2.8e-125 453.0 474 53.2
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 6.2e-125 451.8 408 59.6
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 8.1e-125 451.4 365 63.0
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 1.4e-124 450.7 474 53.0
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 1.8e-124 450.3 365 62.2
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 2.4e-124 449.9 413 58.8
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 4.0e-124 449.1 365 62.2
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 4.0e-124 449.1 363 63.4
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 6.9e-124 448.4 431 56.8
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 1.5e-123 447.2 399 58.1
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 1.7e-122 443.7 513 50.3
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 1.1e-121 441.0 371 60.1
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.4e-121 440.7 352 65.6
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 1.4e-121 440.7 343 64.1
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 1.9e-121 440.3 435 54.5
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 2.4e-121 439.9 396 60.6
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 2.4e-121 439.9 422 55.7
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 1.2e-120 437.6 358 62.8
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 1.6e-120 437.2 449 53.0
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 2.1e-120 436.8 356 61.0
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 4.6e-120 435.6 371 59.8
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 6.0e-120 435.3 359 61.3
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 6.0e-120 435.3 414 54.8
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 3.0e-119 433.0 353 62.6
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 5.1e-119 432.2 354 59.9
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 1.1e-118 431.0 428 56.1
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.9e-118 430.3 364 58.8
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 2.5e-118 429.9 409 57.9
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 9.6e-118 427.9 439 53.8
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 9.6e-118 427.9 354 60.2
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 9.6e-118 427.9 343 61.5
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 4.8e-117 425.6 348 62.4
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 6.2e-117 425.2 423 54.1
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 4.0e-116 422.5 289 72.0
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 1.2e-115 421.0 372 60.2
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.5e-115 420.6 357 60.8
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 2.6e-115 419.9 371 58.2
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 3.4e-115 419.5 350 61.7
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 7.6e-115 418.3 467 49.7
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 3.2e-113 412.9 334 62.9
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 5.4e-113 412.1 315 65.7
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 6.0e-112 408.7 307 66.8
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 1.8e-111 407.1 424 53.1
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.5e-110 404.1 300 64.7
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.5e-110 404.1 346 61.0
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 4.3e-110 402.5 359 55.2
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 2.1e-109 400.2 359 56.3
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.1e-109 400.2 355 59.4
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.6e-109 399.4 373 57.1
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 6.2e-109 398.7 324 61.4
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 3.1e-108 396.4 317 63.4
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 9.0e-108 394.8 356 58.4
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 3.8e-106 389.4 351 56.7
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 4.2e-105 386.0 361 56.8
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.2e-105 386.0 328 60.4
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 3.3e-102 376.3 294 61.6
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 4.0e-100 369.4 526 43.3
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 1.0e-98 364.8 330 60.0
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 6.5e-98 362.1 315 61.6
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 2.5e-97 360.1 480 44.2
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 9.3e-97 358.2 332 56.6
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 1.2e-96 357.8 297 59.3
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 3.7e-93 346.3 257 65.4
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 2.0e-91 340.5 248 66.9
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 6.1e-88 328.9 373 50.4
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 3.6e-80 303.1 377 49.3
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 2.2e-77 293.9 325 51.1
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 4.1e-76 289.7 316 53.8
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 3.8e-74 283.1 238 58.8
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 3.8e-66 256.5 275 49.8
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 3.8e-66 256.5 343 43.4
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 3.2e-65 253.4 210 60.5
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 8.8e-63 245.4 297 42.4
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 9.1e-60 235.3 218 56.0
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 5.9e-59 232.6 286 48.6
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 5.0e-58 229.6 274 49.6
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 9.4e-57 225.3 154 72.1
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 1.6e-51 208.0 187 54.5
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 2.7e-51 207.2 241 46.9
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 1.0e-50 205.3 191 53.4
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 1.4e-47 194.9 292 40.1
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 5.4e-44 183.0 202 49.0
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 1.9e-33 147.9 196 46.9
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 2.5e-33 147.5 150 53.3
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 9.5e-33 145.6 186 43.5
Duzib068G0898 Durio zibethinus HOM05D005158 ORTHO05D005510 3.1e-31 140.6 168 46.4
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 3.4e-30 137.1 112 56.2
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 1.5e-25 121.7 232 36.6
Os06g0269200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 4.7e-24 116.7 82 63.4
Prupe.5G232800 Prunus persica HOM05D005158 ORTHO05D005510 4.7e-24 116.7 86 62.8
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 2.3e-23 114.4 195 40.0
Pp3c9_21990 Physcomitrium patens HOM05D005158 ORTHO05D005510 4.0e-23 113.6 359 28.1
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 1.2e-22 112.1 188 41.0
PGR044G0956 Punica granatum HOM05D005158 ORTHO05D005510 4.4e-22 110.2 193 37.3
AagrBONN_evm.TU.Sc2ySwM_368.719 Anthoceros agrestis HOM05D005158 ORTHO05D005510 9.9e-22 109.0 307 29.3
DCAR_007307 Daucus carota HOM05D005158 ORTHO05D005510 2.9e-21 107.5 98 56.1
MD16G1025900 Malus domestica HOM05D005158 ORTHO05D005510 3.2e-20 104.0 78 67.9
PRCOL_00000423 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 3.2e-20 104.0 227 33.5
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 7.1e-20 102.8 141 45.4
Peaxi162Scf00159g01110 Petunia axillaris HOM05D005158 ORTHO05D005510 7.1e-20 102.8 109 50.5
Solyc05g017940.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 3.5e-19 100.5 105 53.3
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 6.0e-19 99.8 63 76.2
C06p44960 Brassica napus HOM05D005158 ORTHO05D005510 1.7e-18 98.2 107 52.3
MCO07G148 Micromonas commoda HOM05D005158 ORTHO05D005510 5.1e-18 96.7 171 33.3
Mapoly0003s0267 Marchantia polymorpha HOM05D032652 ORTHO05D005510 2.4e-15 87.8 391 26.1
SMO118G0092 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 2.0e-14 84.7 273 26.7
SMO263G0001 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 9.9e-14 82.4 314 26.1
Cpa.g.sc130.33 Carica papaya HOM05D005158 ORTHO05D005510 1.3e-13 82.0 58 65.5
Manes.09G075257 Manihot esculenta HOM05D005158 ORTHO05D005510 1.1e-12 79.0 100 48.0
Pp3c15_24210 Physcomitrium patens HOM05D005158 ORTHO05D005510 3.9e-10 70.5 257 26.5
RcHm_v2.0_Chr7g0199801 Rosa chinensis HOM05D005158 ORTHO05D005510 5.1e-10 70.1 58 53.4
AagrBONN_evm.TU.Sc2ySwM_117.460 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.9e-09 68.2 263 27.4
MCO04G437 Micromonas commoda HOM05D005158 ORTHO05D005510 1.2e-08 65.5 317 25.2
MCO07G404 Micromonas commoda HOM05D005158 ORTHO05D005510 2.8e-08 64.3 281 23.8
Aqoxy2G01678 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 4.0e-07 60.5 62 45.2
CBR_g49491 Chara braunii HOM05D005158 ORTHO05D005510 2.6e-06 57.8 220 23.6


User provided reference genes

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