Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 5.3e-55 217.2 96 100.0
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 3.7e-32 141.4 89 69.7
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 5.4e-31 137.5 89 67.4
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 7.8e-30 133.7 89 64.0
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.0e-29 133.3 83 69.9
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 2.3e-29 132.1 85 68.2
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 5.8e-25 117.5 80 61.2
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 9.8e-25 116.7 70 70.0
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 1.3e-24 116.3 72 69.4
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 8.3e-24 113.6 77 67.5
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 1.1e-23 113.2 90 58.9
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 1.4e-23 112.8 89 59.6
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 1.4e-23 112.8 89 59.6
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 1.4e-23 112.8 89 59.6
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 1.4e-23 112.8 89 59.6
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 1.4e-23 112.8 89 59.6
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 1.9e-23 112.5 84 61.9
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 2.4e-23 112.1 89 58.4
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 2.4e-23 112.1 89 58.4
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 2.4e-23 112.1 89 58.4
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 2.4e-23 112.1 89 58.4
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 3.2e-23 111.7 89 58.4
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 3.2e-23 111.7 89 58.4
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 3.2e-23 111.7 89 59.6
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 3.2e-23 111.7 89 59.6
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 4.1e-23 111.3 65 70.8
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 5.4e-23 110.9 65 70.8
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 5.4e-23 110.9 65 70.8
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 5.4e-23 110.9 65 70.8
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 7.1e-23 110.5 89 58.4
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 7.1e-23 110.5 89 58.4
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 7.1e-23 110.5 89 58.4
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 7.1e-23 110.5 89 58.4
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 7.1e-23 110.5 89 58.4
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 7.1e-23 110.5 89 58.4
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 7.1e-23 110.5 89 58.4
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 7.1e-23 110.5 89 58.4
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 7.1e-23 110.5 89 58.4
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 7.1e-23 110.5 89 58.4
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 7.1e-23 110.5 89 58.4
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 7.1e-23 110.5 89 58.4
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 7.1e-23 110.5 89 58.4
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 7.1e-23 110.5 89 58.4
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 7.1e-23 110.5 89 58.4
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 9.2e-23 110.2 89 58.4
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 9.2e-23 110.2 89 58.4
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 9.2e-23 110.2 89 58.4
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 9.2e-23 110.2 89 58.4
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 9.2e-23 110.2 89 58.4
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 9.2e-23 110.2 89 58.4
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 9.2e-23 110.2 62 72.6
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 1.2e-22 109.8 81 63.0
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 1.6e-22 109.4 89 57.3
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 1.6e-22 109.4 84 60.7
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 1.6e-22 109.4 84 60.7
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 1.6e-22 109.4 84 60.7
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 2.1e-22 109.0 88 58.0
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.7e-22 108.6 69 72.5
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 2.7e-22 108.6 89 57.3
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 2.7e-22 108.6 89 57.3
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 3.5e-22 108.2 91 56.0
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 3.5e-22 108.2 91 56.0
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 4.6e-22 107.8 79 63.3
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 4.6e-22 107.8 89 57.3
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 6.0e-22 107.5 89 57.3
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 7.8e-22 107.1 89 56.2
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 7.8e-22 107.1 89 56.2
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 7.8e-22 107.1 89 56.2
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 7.8e-22 107.1 89 56.2
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 7.8e-22 107.1 89 56.2
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 7.8e-22 107.1 89 56.2
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 7.8e-22 107.1 89 56.2
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 7.8e-22 107.1 89 56.2
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 7.8e-22 107.1 89 56.2
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 2.3e-21 105.5 89 55.1
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 3.0e-21 105.1 89 55.1
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 3.9e-21 104.8 90 56.7
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 3.9e-21 104.8 90 56.7
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 3.9e-21 104.8 89 55.1
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 3.9e-21 104.8 89 55.1
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 3.9e-21 104.8 64 73.4
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 5.1e-21 104.4 90 55.6
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 6.6e-21 104.0 60 76.7
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 6.6e-21 104.0 60 76.7
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 1.5e-20 102.8 89 53.9
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 1.9e-20 102.4 89 53.9
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 2.5e-20 102.1 60 68.3
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 2.5e-20 102.1 77 61.0
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 3.3e-20 101.7 60 70.0
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 1.2e-19 99.8 89 52.8
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 1.6e-19 99.4 59 74.6
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 3.6e-19 98.2 89 52.8
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 6.2e-19 97.4 86 54.7
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 8.1e-19 97.1 72 62.5
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 1.1e-18 96.7 88 53.4
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 1.4e-18 96.3 55 70.9
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 4.0e-18 94.7 89 51.7
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 4.0e-18 94.7 89 51.7
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 5.2e-18 94.4 89 52.8
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 9.9e-17 90.1 64 57.8
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 3.7e-16 88.2 66 59.1
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 3.7e-16 88.2 56 71.4
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 4.9e-16 87.8 55 70.9
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 6.4e-16 87.4 56 67.9
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 1.1e-15 86.7 55 69.1
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.4e-15 85.5 55 69.1
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.2e-14 83.2 54 70.4
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 2.1e-14 82.4 53 69.8
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 4.6e-14 81.3 47 68.1
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 4.6e-14 81.3 50 72.0
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 2.3e-13 79.0 69 56.5
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 3.9e-13 78.2 89 47.2
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 5.1e-13 77.8 48 72.9
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.6e-13 77.4 50 70.0
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.2e-11 73.2 45 73.3
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 2.1e-11 72.4 47 68.1
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 2.8e-11 72.0 47 68.1
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 2.8e-11 72.0 47 68.1
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 3.6e-11 71.6 47 68.1
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 3.6e-11 71.6 79 49.4
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 4.7e-11 71.2 45 71.1
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 4.7e-11 71.2 45 71.1
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.2e-11 70.9 52 63.5
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 1.1e-10 70.1 44 63.6
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 1.8e-10 69.3 44 70.5
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 2.4e-10 68.9 45 68.9
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.1e-10 68.6 78 43.6
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.0e-10 68.2 44 68.2
Aa31LG5G21720 Aethionema arabicum HOM05D000533 ORTHO05D006151 8.9e-10 67.0 47 61.7
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 2.6e-09 65.5 43 60.5
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 2.6e-09 65.5 42 59.5
Atru.chr9.2056 Acer truncatum HOM05D001098 ORTHO05D002527 3.4e-09 65.1 31 83.9
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 1.3e-08 63.2 48 60.4
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 2.9e-08 62.0 40 67.5
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 7.1e-07 57.4 89 38.2
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.6e-06 54.7 36 66.7


User provided reference genes

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