Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G005030 Citrullus lanatus HOM05D008657 ORTHO05D010869 7.6e-228 794.3 421 100.0
MELO3C011779.2 Cucumis melo HOM05D008657 ORTHO05D010869 2.5e-162 576.6 420 75.5
CsaV3_5G029290 Cucumis sativus L. HOM05D008657 ORTHO05D010869 9.1e-157 558.1 371 81.4
Sed0024339 Sechium edule HOM05D008657 ORTHO05D010869 1.4e-152 544.3 411 68.1
RcHm_v2.0_Chr1g0330001 Rosa chinensis HOM05D008657 ORTHO05D010869 1.1e-80 305.4 361 52.6
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 1.1e-74 285.4 429 47.6
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.3e-64 250.0 401 44.1
Prupe.2G051600 Prunus persica HOM05D008657 ORTHO05D010869 5.3e-64 250.0 415 44.3
Sc08g0000170 Simmondsia chinensis HOM05D008657 ORTHO05D010869 5.0e-62 243.4 426 39.7
COL.COLO4_28899 Corchorus olitorius HOM05D008657 ORTHO05D010869 8.5e-62 242.7 331 50.5
BolC7t40688H Brassica oleracea HOM05D008657 ORTHO05D010869 2.6e-58 231.1 305 47.2
C07p02910 Brassica napus HOM05D008657 ORTHO05D010869 7.4e-58 229.6 305 46.9
A07p01450 Brassica napus HOM05D008657 ORTHO05D010869 1.2e-55 222.2 335 43.0
PGR031G0953 Punica granatum HOM05D008657 ORTHO05D010869 4.5e-55 220.3 415 41.0
CANSAT56G3352 Cannabis sativa HOM05D008657 ORTHO05D010869 1.3e-54 218.8 340 45.0
BcaC06g36560 Brassica carinata HOM05D008657 ORTHO05D010869 1.7e-54 218.4 298 46.3
Cpa.g.sc33.145 Carica papaya HOM05D008657 ORTHO05D010869 1.7e-54 218.4 344 44.8
Lj3C333T3 Lonicera japonica HOM05D008657 ORTHO05D010869 1.7e-54 218.4 422 41.9
Actinidia03250 Actinidia chinensis HOM05D008657 ORTHO05D010869 2.9e-54 217.6 329 45.6
BcaB03g16718 Brassica carinata HOM05D008657 ORTHO05D010869 2.9e-54 217.6 298 39.6
FAN10G0285 Fragaria x ananassa HOM05D008657 ORTHO05D010869 4.2e-53 213.8 342 45.3
BraA07t27942Z Brassica rapa HOM05D008657 ORTHO05D010869 1.6e-52 211.8 330 42.7
TAR376G1027 Trochodendron aralioides HOM05D008657 ORTHO05D010869 1.8e-48 198.4 411 39.2
Aa31LG8G16330 Aethionema arabicum HOM05D008657 ORTHO05D010869 4.5e-47 193.7 334 40.1
Thhalv10023028m.g Eutrema salsugineum HOM05D008657 ORTHO05D010869 1.7e-46 191.8 303 36.3
Hund22231 Selenicereus undatus HOM05D008657 ORTHO05D010869 1.7e-46 191.8 335 42.1
AT2G19280 Arabidopsis thaliana HOM05D008657 ORTHO05D010869 1.9e-45 188.3 391 36.8
Carub.0003s3351 Capsella rubella HOM05D008657 ORTHO05D010869 1.6e-44 185.3 325 40.0
Sp3g32660 Schrenkiella parvula HOM05D008657 ORTHO05D010869 2.3e-43 181.4 325 41.5
AL3G49010 Arabidopsis lyrata HOM05D008657 ORTHO05D010869 3.4e-42 177.6 401 35.4
FvH4_7g04580 Fragaria vesca HOM05D008657 ORTHO05D010869 1.7e-41 175.3 347 41.2
FAN06G4111 Fragaria x ananassa HOM05D008657 ORTHO05D010869 2.2e-41 174.9 347 40.9
CARHR109740 Cardamine hirsuta HOM05D008657 ORTHO05D010869 2.4e-40 171.4 365 37.0
FAN01G0963 Fragaria x ananassa HOM05D008657 ORTHO05D010869 7.0e-40 169.9 350 39.4
Gohir.A06G171100 Gossypium hirsutum HOM05D008657 ORTHO05D010869 9.8e-34 149.4 401 35.2
Gorai.010G208900 Gossypium raimondii HOM05D008657 ORTHO05D010869 2.4e-32 144.8 324 38.3
Thecc.10G128900 Theobroma cacao HOM05D008657 ORTHO05D010869 5.4e-32 143.7 325 39.4
DCAR_018350 Daucus carota HOM05D008657 ORTHO05D010869 7.0e-32 143.3 351 34.2
FAN03G0499 Fragaria x ananassa HOM05D008657 ORTHO05D010869 6.6e-30 136.7 151 49.7
Eucgr.G03180 Eucalyptus grandis HOM05D008657 ORTHO05D010869 1.2e-26 125.9 231 36.4
Lj3A303T33 Lonicera japonica HOM05D008657 ORTHO05D010869 2.7e-23 114.8 333 31.2
Oeu052822.1 Olea europaea HOM05D008657 ORTHO05D010869 5.6e-21 107.1 238 41.6
DCAR_005541 Daucus carota HOM05D007128 ORTHO05D009059 7.3e-13 80.1 298 25.5
Duzib138G0502 Durio zibethinus HOM05D007595 ORTHO05D009570 3.1e-11 74.7 216 26.9
Lj3C325T0 Lonicera japonica HOM05D008657 ORTHO05D010869 8.9e-11 73.2 75 50.7
Gohir.A12G098700 Gossypium hirsutum HOM05D007595 ORTHO05D009570 3.4e-10 71.2 216 25.0
Gohir.D06G179000 Gossypium hirsutum HOM05D008657 ORTHO05D010869 3.4e-10 71.2 206 36.9
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.3e-09 69.3 180 28.3
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 3.7e-09 67.8 260 23.8
Gorai.010G000600 Gossypium raimondii HOM05D007063 ORTHO05D008822 4.9e-09 67.4 196 33.7
Ca_24431_v3 Cicer arietinum L. HOM05D007128 ORTHO05D009059 6.4e-09 67.0 241 23.7
PGSC0003DMG401025809 Solanum tuberosum HOM05D006858 ORTHO05D008767 4.1e-08 64.3 204 23.5
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.4e-08 63.9 200 24.0
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 5.4e-08 63.9 205 24.4
AT5G15010 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 7.1e-08 63.5 194 25.3
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 7.1e-08 63.5 194 25.3
AUR62003048 Chenopodium quinoa HOM05D007623 ORTHO05D009641 9.2e-08 63.2 215 25.1
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 1.2e-07 62.8 192 24.0
arahy.Tifrunner.gnm1.ann1.GQ8ZCN Arachis hypogaea HOM05D002890 ORTHO05D009847 1.2e-07 62.8 217 25.8
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 1.2e-07 62.8 202 24.8
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.2e-07 62.8 294 22.1
Thhalv10015264m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 1.6e-07 62.4 194 24.7
Gohir.A08G253850 Gossypium hirsutum HOM05D007063 ORTHO05D008822 1.6e-07 62.4 198 33.8
Actinidia18161 Actinidia chinensis HOM05D008483 ORTHO05D010726 2.1e-07 62.0 201 25.9
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 2.1e-07 62.0 173 26.6
Gohir.A02G014400 Gossypium hirsutum HOM05D007128 ORTHO05D009059 2.1e-07 62.0 146 30.8
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 2.1e-07 62.0 216 24.5
MBI05_g05281_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D009847 2.7e-07 61.6 207 24.6
Rhsim06G0177300 Rhododendron simsii HOM05D005764 ORTHO05D006600 2.7e-07 61.6 188 23.4
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 2.7e-07 61.6 215 22.8
CARHR198300 Cardamine hirsuta HOM05D000424 ORTHO05D000355 3.5e-07 61.2 311 23.2
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 3.5e-07 61.2 229 26.2
AL6G25830 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 4.6e-07 60.8 257 24.1
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 4.6e-07 60.8 281 22.1
Migut.H00188 Erythranthe guttata HOM05D000424 ORTHO05D000355 4.6e-07 60.8 192 22.9
Dinv22679 Davidia involucrata HOM05D007128 ORTHO05D009059 6.0e-07 60.5 141 29.8
Oeu041026.1 Olea europaea HOM05D007212 ORTHO05D009094 6.0e-07 60.5 212 24.1
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 6.0e-07 60.5 184 25.0
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 7.8e-07 60.1 199 31.7
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 7.8e-07 60.1 205 22.9
arahy.Tifrunner.gnm1.ann1.59TWC6 Arachis hypogaea HOM05D002890 ORTHO05D009847 1.0e-06 59.7 218 22.5
Carub.0006s1317 Capsella rubella HOM05D000424 ORTHO05D000355 1.0e-06 59.7 194 24.2
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 1.0e-06 59.7 124 27.4
MSTRG.27720 Avicennia marina HOM05D006858 ORTHO05D008767 1.3e-06 59.3 204 21.6
Cfa015785 Carpinus fangiana HOM05D007128 ORTHO05D009059 1.3e-06 59.3 138 27.5
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 1.3e-06 59.3 222 24.3
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 1.3e-06 59.3 203 24.6
Sabra07G0100100 Salix brachista HOM05D007128 ORTHO05D009059 1.3e-06 59.3 206 25.7
SalBow5G0171 Salvia bowleyana HOM05D000424 ORTHO05D000355 1.3e-06 59.3 288 22.2
SalBow5G2401 Salvia bowleyana HOM05D000424 ORTHO05D000355 1.3e-06 59.3 288 22.2
TAR383G0144 Trochodendron aralioides HOM05D007168 ORTHO05D009495 1.3e-06 59.3 190 22.6
arahy.Tifrunner.gnm1.ann1.NUL68I Arachis hypogaea HOM05D002890 ORTHO05D009847 1.7e-06 58.9 218 22.5
SEGI_11241 Sequoiadendron giganteum HOM05D007496 ORTHO05D009479 1.7e-06 58.9 152 25.7
EL10Ac6g14659 Beta vulgaris HOM05D007623 ORTHO05D009641 2.3e-06 58.5 226 26.1
SGA_v2.0_scaffold296G47545 Striga asiatica HOM05D004783 ORTHO05D005581 2.3e-06 58.5 317 19.9
DCAR_020984 Daucus carota HOM05D000300 ORTHO05D000383 3.0e-06 58.2 279 22.2
Gorai.005G019500 Gossypium raimondii HOM05D007128 ORTHO05D009059 3.0e-06 58.2 203 24.1
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 3.0e-06 58.2 250 24.0
Peaxi162Scf00315g00041 Petunia axillaris HOM05D004783 ORTHO05D005581 3.0e-06 58.2 312 22.4
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 3.0e-06 58.2 184 26.6
Psat2g189360 Pisum sativum HOM05D007128 ORTHO05D009059 3.0e-06 58.2 216 24.5
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 3.0e-06 58.2 307 21.8
SEGI_04891 Sequoiadendron giganteum HOM05D006888 ORTHO05D008371 3.0e-06 58.2 153 25.5
Thecc.01G038900 Theobroma cacao HOM05D000891 ORTHO05D000761 3.0e-06 58.2 238 26.5
HPP92_010744 Vanilla planifolia HOM05D007168 ORTHO05D009495 3.0e-06 58.2 193 22.8
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 3.9e-06 57.8 135 28.9
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 3.9e-06 57.8 215 22.3
Ciclev10019425m.g Citrus clementina HOM05D000424 ORTHO05D000355 3.9e-06 57.8 192 24.0
Migut.G01107 Erythranthe guttata HOM05D007212 ORTHO05D009094 3.9e-06 57.8 316 21.5
Phvul.002G041300 Phaseolus vulgaris HOM05D007128 ORTHO05D009059 3.9e-06 57.8 205 22.4
Solyc07g042030.2 Solanum lycopersicum HOM05D004783 ORTHO05D005581 3.9e-06 57.8 312 20.8
TPR.G16108 Trifolium pratense HOM05D006503 ORTHO05D008116 3.9e-06 57.8 165 26.1
arahy.Tifrunner.gnm1.ann1.I4YG6Q Arachis hypogaea HOM05D000424 ORTHO05D000355 5.1e-06 57.4 176 25.0
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 5.1e-06 57.4 194 23.2
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 5.1e-06 57.4 194 23.2
Gohir.D12G065400 Gossypium hirsutum HOM05D000891 ORTHO05D000761 5.1e-06 57.4 238 24.4
Gorai.008G068700 Gossypium raimondii HOM05D000891 ORTHO05D000761 5.1e-06 57.4 238 24.4
MD12G1000700 Malus domestica HOM05D000424 ORTHO05D000355 5.1e-06 57.4 188 22.9
Atru.chr3.547 Acer truncatum HOM05D000891 ORTHO05D000761 6.6e-06 57.0 246 25.2
ATR0048G027 Amborella trichopoda HOM05D007623 ORTHO05D009641 6.6e-06 57.0 140 27.9
Haze_00709 Corylus avellana HOM05D007128 ORTHO05D009059 6.6e-06 57.0 138 26.8
Potri.007G123600 Populus trichocarpa HOM05D007128 ORTHO05D009059 6.6e-06 57.0 206 25.7
PGSC0003DMG400011668 Solanum tuberosum HOM05D000424 ORTHO05D000355 6.6e-06 57.0 203 23.6
TAR383G0679 Trochodendron aralioides HOM05D007173 ORTHO05D009151 6.6e-06 57.0 250 20.8
TAR633G0543 Trochodendron aralioides HOM05D007128 ORTHO05D009059 6.6e-06 57.0 138 27.5
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 8.6e-06 56.6 172 22.7
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 8.6e-06 56.6 235 23.8
Lsat_1_v5_gn_3_56000 Lactuca sativa HOM05D005622 ORTHO05D002854 8.6e-06 56.6 247 22.7
Lj9A359T74 Lonicera japonica HOM05D006858 ORTHO05D008767 8.6e-06 56.6 214 22.9
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 8.6e-06 56.6 212 26.4
Sopen07g021630 Solanum pennellii HOM05D004783 ORTHO05D005581 8.6e-06 56.6 312 21.5
VMungo1309G2539 Vigna mungo HOM05D007128 ORTHO05D009059 8.6e-06 56.6 205 23.4


User provided reference genes

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