Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G004850 Citrullus lanatus HOM05D006817 ORTHO05D008603 2.3e-274 948.3 502 100.0
CsaV3_5G010750 Cucumis sativus L. HOM05D006817 ORTHO05D008603 4.3e-265 917.5 502 95.8
MELO3C020113.2 Cucumis melo HOM05D006817 ORTHO05D008603 2.2e-261 905.2 505 94.1
Sed0020006 Sechium edule HOM05D006817 ORTHO05D008603 5.7e-249 864.0 496 90.9
GSVIVG01032704001 Vitis vinifera HOM05D006817 ORTHO05D008603 8.9e-194 680.6 502 73.3
TAR623G0065 Trochodendron aralioides HOM05D006817 ORTHO05D008603 1.1e-191 673.7 504 72.2
Ciclev10031264m.g Citrus clementina HOM05D006817 ORTHO05D008603 2.4e-191 672.5 509 71.1
Atru.chr12.157 Acer truncatum HOM05D006817 ORTHO05D008603 1.6e-190 669.8 503 71.8
Potri.019G048700 Populus trichocarpa HOM05D006817 ORTHO05D008603 1.0e-189 667.2 500 72.0
arahy.Tifrunner.gnm1.ann1.6ZT9VY Arachis hypogaea HOM05D006817 ORTHO05D008603 1.5e-188 663.3 499 70.5
arahy.Tifrunner.gnm1.ann1.6QBV89 Arachis hypogaea HOM05D006817 ORTHO05D008603 3.3e-188 662.1 499 70.5
TWI09G1614 Tripterygium wilfordii HOM05D006817 ORTHO05D008603 2.1e-187 659.4 503 70.2
MD01G1164100 Malus domestica HOM05D006817 ORTHO05D008603 3.6e-187 658.7 502 71.5
Thecc.10G176900 Theobroma cacao HOM05D006817 ORTHO05D008603 6.2e-187 657.9 504 71.2
Prupe.2G261900 Prunus persica HOM05D006817 ORTHO05D008603 2.4e-186 656.0 504 72.0
Actinidia00992 Actinidia chinensis HOM05D006817 ORTHO05D008603 2.6e-185 652.5 501 68.7
CSS0030257 Camellia sinensis var. sinensis HOM05D006817 ORTHO05D008603 9.9e-185 650.6 504 69.6
Gohir.A10G180300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 4.9e-184 648.3 507 69.8
Gorai.011G210100 Gossypium raimondii HOM05D006817 ORTHO05D008603 8.4e-184 647.5 507 69.6
Aqoxy4G02362 Aquilegia oxysepala HOM05D006817 ORTHO05D008603 1.1e-183 647.1 501 70.5
Phvul.001G074700 Phaseolus vulgaris HOM05D006817 ORTHO05D008603 3.2e-183 645.6 501 70.1
Lj5g0023407 Lotus japonicus HOM05D006817 ORTHO05D008603 9.3e-183 644.0 496 69.2
Medtr1g007630 Medicago truncatula HOM05D006817 ORTHO05D008603 9.3e-183 644.0 493 69.8
Migut.F00593 Erythranthe guttata HOM05D006817 ORTHO05D008603 1.6e-182 643.3 499 69.7
Oeu036532.1 Olea europaea HOM05D006817 ORTHO05D008603 1.6e-182 643.3 499 70.3
PGR044G0301 Punica granatum HOM05D006817 ORTHO05D008603 2.7e-182 642.5 503 70.0
Psat6g035880 Pisum sativum HOM05D006817 ORTHO05D008603 6.0e-182 641.3 493 69.2
Glyma.19G067100 Glycine max HOM05D006817 ORTHO05D008603 1.0e-181 640.6 495 70.7
Nn2g10348 Nelumbo nucifera HOM05D006817 ORTHO05D008603 1.3e-181 640.2 500 69.0
THA.LOC104816518 Tarenaya hassleriana HOM05D006817 ORTHO05D008603 2.5e-180 636.0 496 70.0
TPR.G24539 Trifolium pratense HOM05D006817 ORTHO05D008603 1.6e-179 633.3 493 69.0
Rhsim09G0184300 Rhododendron simsii HOM05D006817 ORTHO05D008603 2.4e-178 629.4 512 67.6
Eucgr.J00131 Eucalyptus grandis HOM05D006817 ORTHO05D008603 4.0e-178 628.6 493 68.8
Thhalv10013352m.g Eutrema salsugineum HOM05D006817 ORTHO05D008603 5.3e-178 628.2 499 69.5
BraA10t45133Z Brassica rapa HOM05D006817 ORTHO05D008603 1.5e-177 626.7 501 69.5
A10p30880 Brassica napus HOM05D006817 ORTHO05D008603 2.0e-177 626.3 491 70.1
Peaxi162Scf00739g00017 Petunia axillaris HOM05D006817 ORTHO05D008603 2.0e-177 626.3 518 66.8
BcaC06g32240 Brassica carinata HOM05D006817 ORTHO05D008603 1.3e-176 623.6 491 69.5
CAN.G169.4 Capsicum annuum HOM05D006817 ORTHO05D008603 1.3e-176 623.6 500 67.4
Nitab4.5_0011715g0010 Nicotiana tabacum HOM05D006817 ORTHO05D008603 1.3e-176 623.6 500 67.6
BolC9t59902H Brassica oleracea HOM05D006817 ORTHO05D008603 8.4e-176 620.9 496 69.0
Gohir.D10G187300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 8.4e-176 620.9 507 67.7
MSTRG.27274 Avicennia marina HOM05D006817 ORTHO05D008603 1.4e-175 620.2 497 67.4
C09p71390 Brassica napus HOM05D006817 ORTHO05D008603 4.2e-175 618.6 491 69.2
Sp6g37510 Schrenkiella parvula HOM05D006817 ORTHO05D008603 4.2e-175 618.6 501 67.5
Sopen06g015650 Solanum pennellii HOM05D006817 ORTHO05D008603 7.1e-175 617.8 496 67.5
Solyc06g050210.3 Solanum lycopersicum HOM05D006817 ORTHO05D008603 1.2e-174 617.1 496 67.5
PSO170G5674 Papaver somniferum HOM05D006817 ORTHO05D008603 2.1e-174 616.3 507 66.7
COL.COLO4_10038 Corchorus olitorius HOM05D006817 ORTHO05D008603 3.9e-173 612.1 483 70.0
Lalb_Chr22g0360921 Lupinus albus HOM05D006817 ORTHO05D008603 9.6e-172 607.4 491 67.0
EL10Ac2g04256 Beta vulgaris HOM05D006817 ORTHO05D008603 4.8e-171 605.1 493 65.7
Cc02_g05530 Coffea canephora HOM05D006817 ORTHO05D008603 1.8e-170 603.2 505 66.9
MBI15_g27349_MAGBIO Magnolia biondii HOM05D006817 ORTHO05D008603 4.0e-170 602.1 564 59.6
vmacro09974 Vaccinium macrocarpon HOM05D006817 ORTHO05D008603 4.0e-170 602.1 512 65.4
ECA232G4264 Erigeron canadensis HOM05D006817 ORTHO05D008603 9.9e-169 597.4 507 63.7
Manes.10G004900 Manihot esculenta HOM05D006817 ORTHO05D008603 9.9e-169 597.4 503 66.0
Lsat_1_v5_gn_9_59361 Lactuca sativa HOM05D006817 ORTHO05D008603 2.2e-168 596.3 508 64.6
Sc11g0005730 Simmondsia chinensis HOM05D006817 ORTHO05D008603 2.9e-168 595.9 491 66.2
Cpa.g.sc19.86 Carica papaya HOM05D006817 ORTHO05D008603 1.4e-167 593.6 500 65.6
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.4e-167 593.6 504 66.5
Ah.16g104230 Amaranthus hybridus HOM05D006817 ORTHO05D008603 9.3e-167 590.9 524 62.0
CDE04G2280 Ceratophyllum demersum HOM05D006817 ORTHO05D008603 1.2e-166 590.5 498 64.5
ATR0681G057 Amborella trichopoda HOM05D006817 ORTHO05D008603 2.1e-166 589.7 499 66.1
DCAR_014588 Daucus carota HOM05D006817 ORTHO05D008603 1.3e-165 587.0 505 65.0
Cfa001223 Carpinus fangiana HOM05D006817 ORTHO05D008603 3.0e-165 585.9 442 74.0
HanXRQChr15g0493791 Helianthus annuus HOM05D006817 ORTHO05D008603 4.3e-164 582.0 476 66.6
FAN03G2834 Fragaria x ananassa HOM05D006817 ORTHO05D008603 6.2e-163 578.2 551 60.6
Zm00001eb406320 Zea mays HOM05D006817 ORTHO05D008603 2.9e-160 569.3 494 63.0
HPP92_019064 Vanilla planifolia HOM05D006817 ORTHO05D008603 3.8e-160 568.9 493 62.9
QL08p064576 Quercus lobata HOM05D006817 ORTHO05D008603 1.1e-159 567.4 459 69.5
Os12g0112300 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 1.2e-158 563.9 493 63.7
PSO017G6024 Papaver somniferum HOM05D006817 ORTHO05D008603 1.3e-157 560.5 461 66.8
FAN01G1353 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.1e-156 557.4 454 67.6
Haze_17339 Corylus avellana HOM05D006817 ORTHO05D008603 1.5e-156 557.0 478 67.6
FAN10G2384 Fragaria x ananassa HOM05D006817 ORTHO05D008603 5.3e-154 548.5 452 67.5
HanXRQChr08g0222561 Helianthus annuus HOM05D006817 ORTHO05D008603 9.0e-154 547.7 513 59.6
AUR62003430 Chenopodium quinoa HOM05D006817 ORTHO05D008603 5.5e-151 538.5 516 60.1
Lj8A57G58 Lonicera japonica HOM05D006817 ORTHO05D008603 9.7e-148 527.7 408 70.8
CiPaw.02G198400 Carya illinoinensis HOM05D006817 ORTHO05D008603 2.2e-147 526.6 413 70.0
AUR62012358 Chenopodium quinoa HOM05D006817 ORTHO05D008603 3.4e-145 519.2 473 63.4
CANSAT56G1261 Cannabis sativa HOM05D006817 ORTHO05D008603 1.0e-144 517.7 485 63.3
FvH4_7g25670 Fragaria vesca HOM05D006817 ORTHO05D008603 5.0e-144 515.4 435 65.1
Aa31LG11G6330 Aethionema arabicum HOM05D006817 ORTHO05D008603 3.6e-142 509.2 492 60.8
SGA_v2.0_scaffold44G16643 Striga asiatica HOM05D006817 ORTHO05D008603 1.4e-141 507.3 503 58.1
Sabra19G0058300 Salix brachista HOM05D000055 ORTHO05D000057 4.1e-138 495.7 469 61.0
CARHR207930 Cardamine hirsuta HOM05D006817 ORTHO05D008603 7.7e-129 464.9 372 68.5
MD07G1231900 Malus domestica HOM05D006817 ORTHO05D008603 2.3e-125 453.4 363 70.5
AT5G05310 Arabidopsis thaliana HOM05D006817 ORTHO05D008603 2.2e-120 436.8 334 69.2
AUR62031486 Chenopodium quinoa HOM05D006817 ORTHO05D008603 5.4e-106 389.0 498 50.8
Pp3c22_2490 Physcomitrium patens HOM05D006817 ORTHO05D008603 1.8e-101 374.0 503 46.3
Ca_12776_v3 Cicer arietinum L. HOM05D006817 ORTHO05D008603 3.5e-97 359.8 323 62.8
unitig_46.g18743 Utricularia gibba HOM05D006817 ORTHO05D008603 2.2e-91 340.5 372 51.1
Carub.0006s0424 Capsella rubella HOM05D006817 ORTHO05D008603 2.9e-91 340.1 283 66.1
RcHm_v2.0_Chr1g0371891 Rosa chinensis HOM05D006817 ORTHO05D008603 8.3e-91 338.6 254 71.3
VMungo0647G0362 Vigna mungo HOM05D006817 ORTHO05D008603 2.1e-81 307.4 253 68.0
MD05G1328700 Malus domestica HOM05D006817 ORTHO05D008603 2.5e-71 273.9 247 65.2
Nitab4.5_0000109g0530 Nicotiana tabacum HOM05D006817 ORTHO05D008603 1.8e-69 267.7 239 62.8
RcHm_v2.0_Chr1g0371881 Rosa chinensis HOM05D006817 ORTHO05D008603 1.4e-66 258.1 171 77.2
SEGI_05100 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 4.6e-65 253.1 216 59.3
VMungo0647G0650 Vigna mungo HOM05D006817 ORTHO05D008603 7.6e-60 235.7 212 61.8
MSTRG.24128 Avicennia marina HOM05D006817 ORTHO05D008603 1.8e-53 214.5 153 69.3
MD07G1231800 Malus domestica HOM05D006817 ORTHO05D008603 3.4e-52 210.3 160 69.4
QL10p038395 Quercus lobata HOM05D006817 ORTHO05D008603 9.9e-52 208.8 179 65.9
Oeu020109.1 Olea europaea HOM05D006817 ORTHO05D008603 3.2e-42 177.2 158 58.2
QL05p063879 Quercus lobata HOM05D006817 ORTHO05D008603 1.9e-39 167.9 130 70.0
SEGI_41528 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 6.3e-38 162.9 164 56.1
Cre08.g361000 Chlamydomonas reinhardtii HOM05D006817 ORTHO05D008603 7.9e-33 146.0 489 28.6
QL03p030054 Quercus lobata HOM05D006817 ORTHO05D008603 4.8e-30 136.7 95 78.9
QL06p040335 Quercus lobata HOM05D006817 ORTHO05D008603 3.1e-29 134.0 104 73.1
FvH4_7g25690 Fragaria vesca HOM05D006817 ORTHO05D008603 6.9e-29 132.9 90 75.6
QL09p047975 Quercus lobata HOM05D000176 ORTHO05D000106 1.4e-26 125.2 104 69.2
FAN06G4794 Fragaria x ananassa HOM05D006817 ORTHO05D008603 5.1e-24 116.7 76 76.3
Hund15836 Selenicereus undatus HOM05D006817 ORTHO05D008603 2.0e-23 114.8 72 79.2
Os11g0112900 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 2.4e-21 107.8 99 61.6
QL08p064573 Quercus lobata HOM05D006817 ORTHO05D008603 2.9e-19 100.9 63 74.6
QL10p065865 Quercus lobata HOM05D006817 ORTHO05D008603 8.5e-19 99.4 85 65.9
FAN06G1140 Fragaria x ananassa HOM05D006817 ORTHO05D008603 5.7e-15 86.7 59 76.3
MD17G1183400 Malus domestica HOM05D006817 ORTHO05D008603 1.3e-14 85.5 57 78.9
PGSC0003DMG400024308 Solanum tuberosum HOM05D006817 ORTHO05D008603 4.4e-07 60.5 42 64.3
Prupe.2G262300 Prunus persica HOM05D006817 ORTHO05D008603 5.7e-07 60.1 90 44.4


User provided reference genes

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