Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 2.9e-88 328.6 170 100.0
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 3.7e-83 311.6 170 94.7
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 7.7e-81 303.9 170 92.9
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 2.7e-78 295.4 170 90.0
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 1.3e-59 233.4 172 70.3
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 1.7e-59 233.0 169 71.0
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.1e-58 230.3 168 69.0
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 2.4e-58 229.2 168 69.6
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 4.1e-58 228.4 168 69.0
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 2.0e-57 226.1 172 70.9
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 7.7e-57 224.2 170 69.4
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 5.0e-56 221.5 169 66.9
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.5e-55 219.9 169 66.9
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 3.3e-55 218.8 182 64.3
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 3.3e-55 218.8 170 68.2
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 5.6e-55 218.0 168 67.3
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 1.2e-54 216.9 173 67.6
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 1.2e-54 216.9 171 66.7
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 6.1e-54 214.5 176 61.9
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 8.0e-54 214.2 166 71.7
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 2.3e-53 212.6 170 65.9
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 3.0e-53 212.2 169 65.1
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 4.0e-53 211.8 172 63.4
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 6.8e-53 211.1 176 60.8
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 6.8e-53 211.1 180 63.3
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 1.5e-52 209.9 169 67.5
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 2.6e-52 209.1 171 67.8
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.4e-52 208.4 166 65.7
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 4.4e-52 208.4 175 64.6
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 1.7e-51 206.5 173 64.2
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 1.1e-50 203.8 168 62.5
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.4e-50 203.4 173 63.0
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 1.4e-50 203.4 165 65.5
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.2e-49 200.3 173 63.0
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 1.6e-49 199.9 171 66.7
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 7.8e-49 197.6 175 60.6
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.0e-48 197.2 169 61.5
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 1.0e-48 197.2 178 61.2
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 1.3e-48 196.8 185 58.9
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.7e-48 196.4 178 62.4
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 3.0e-48 195.7 172 59.9
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 3.9e-48 195.3 169 60.9
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 3.9e-48 195.3 169 60.9
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 3.9e-48 195.3 167 60.5
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 6.6e-48 194.5 172 59.9
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 1.1e-47 193.7 169 61.5
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 3.3e-47 192.2 172 59.9
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 3.3e-47 192.2 179 58.1
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 5.6e-47 191.4 173 59.0
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 5.6e-47 191.4 172 60.5
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 9.5e-47 190.7 169 57.4
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 9.5e-47 190.7 169 57.4
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 9.5e-47 190.7 169 58.6
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.6e-46 189.9 170 60.0
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 1.6e-46 189.9 172 58.7
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 1.6e-46 189.9 163 61.3
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 2.1e-46 189.5 169 56.8
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 3.6e-46 188.7 167 59.3
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 3.6e-46 188.7 172 59.9
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 2.3e-45 186.0 169 58.0
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 3.1e-45 185.7 168 57.7
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 2.6e-44 182.6 170 58.2
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 7.5e-44 181.0 177 57.1
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 9.8e-44 180.6 170 55.9
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 9.8e-44 180.6 170 60.6
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.3e-43 180.3 170 54.7
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.9e-43 179.1 170 55.3
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.9e-43 179.1 170 57.1
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 3.7e-43 178.7 169 56.8
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 3.7e-43 178.7 170 55.3
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 3.7e-43 178.7 173 58.4
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.9e-43 178.3 240 46.2
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 4.9e-43 178.3 170 54.7
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 1.1e-42 177.2 112 80.4
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 1.4e-42 176.8 106 81.1
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 2.4e-42 176.0 175 55.4
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 4.1e-42 175.3 124 68.5
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 5.4e-42 174.9 178 55.1
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 5.4e-42 174.9 178 55.1
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.0e-41 172.9 171 55.0
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 3.5e-41 172.2 179 52.5
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.0e-40 170.6 178 53.4
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.0e-40 170.6 132 67.4
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 1.3e-40 170.2 158 57.0
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 2.3e-40 169.5 168 55.4
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 2.3e-40 169.5 170 55.3
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 3.9e-40 168.7 169 57.4
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 8.6e-40 167.5 165 54.5
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 8.6e-40 167.5 163 53.4
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 1.5e-39 166.8 168 56.0
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 3.3e-39 165.6 169 53.8
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 7.3e-39 164.5 167 55.7
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 9.5e-39 164.1 104 77.9
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 2.8e-38 162.5 169 51.5
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 2.8e-38 162.5 141 60.3
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 4.7e-38 161.8 168 54.8
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 8.1e-38 161.0 170 52.4
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 1.8e-37 159.8 186 52.7
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 1.8e-37 159.8 151 57.0
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 1.8e-37 159.8 169 54.4
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 2.3e-37 159.5 170 52.4
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 5.2e-37 158.3 173 54.3
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 5.2e-37 158.3 180 50.6
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 1.5e-36 156.8 179 50.3
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 3.4e-36 155.6 169 48.5
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 3.4e-36 155.6 161 52.8
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 5.8e-36 154.8 130 59.2
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 2.2e-35 152.9 171 49.7
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 2.2e-35 152.9 154 55.2
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 6.4e-35 151.4 130 60.8
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 9.2e-34 147.5 188 47.9
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.1e-33 146.4 128 60.2
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 2.1e-33 146.4 172 48.3
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 3.5e-33 145.6 174 46.6
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 4.6e-33 145.2 183 46.4
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 6.0e-33 144.8 119 60.5
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 1.0e-32 144.1 155 52.3
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 3.0e-32 142.5 106 67.9
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 1.5e-31 140.2 165 50.3
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 4.7e-30 135.2 176 43.2
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.4e-29 133.7 170 47.6
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 9.9e-28 127.5 182 41.2
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 1.3e-27 127.1 97 64.9
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 2.9e-27 125.9 132 53.0
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 2.9e-27 125.9 106 60.4
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 3.9e-24 115.5 106 53.8
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 1.5e-23 113.6 75 76.0
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 5.6e-23 111.7 106 51.9
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 4.7e-22 108.6 121 57.0
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 1.7e-19 100.1 107 52.3
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 6.4e-19 98.2 170 35.9
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 7.1e-18 94.7 104 52.9
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 7.1e-18 94.7 104 52.9
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 1.6e-17 93.6 97 54.6
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 3.4e-12 75.9 111 36.9
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.9e-10 70.1 133 39.1
MCO11G196 Micromonas commoda HOM05D004876 ORTHO05D005488 3.2e-10 69.3 110 32.7
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 6.0e-09 65.1 62 50.0
Actinidia31636 Actinidia chinensis HOM05D004876 ORTHO05D005488 2.3e-08 63.2 99 41.4
Nitab4.5_0001671g0020 Nicotiana tabacum HOM05D004876 ORTHO05D005488 7.4e-07 58.2 64 50.0


User provided reference genes

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