Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 3.4e-242 841.3 428 100.0
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 2.9e-225 785.0 428 93.2
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 3.2e-224 781.6 428 93.7
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 4.7e-212 741.1 428 90.0
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 3.9e-182 641.7 420 78.3
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 8.7e-182 640.6 413 78.2
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 1.5e-181 639.8 437 76.0
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 3.7e-180 635.2 419 77.3
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 4.8e-180 634.8 419 77.1
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 1.1e-179 633.6 419 77.1
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 1.2e-178 630.2 419 77.1
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 2.6e-178 629.0 426 76.3
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 2.7e-175 619.0 419 74.7
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 2.7e-175 619.0 412 76.7
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 3.6e-175 618.6 419 75.9
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 6.1e-175 617.8 419 74.5
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 7.9e-175 617.5 408 77.7
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 7.9e-175 617.5 418 76.8
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.8e-174 616.3 419 74.5
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 2.5e-173 612.5 420 73.1
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 8.2e-172 607.4 419 73.3
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 1.8e-171 606.3 415 74.2
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 2.0e-170 602.8 422 74.4
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 1.1e-168 597.0 419 72.6
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 1.4e-168 596.7 416 73.8
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 4.2e-168 595.1 408 74.0
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 7.2e-168 594.3 418 73.9
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 1.2e-167 593.6 416 72.6
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 2.1e-167 592.8 416 72.6
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 4.7e-167 591.7 419 72.1
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 7.9e-167 590.9 422 72.0
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 7.9e-167 590.9 419 72.6
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 1.0e-166 590.5 413 72.4
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 2.3e-166 589.3 417 71.0
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 2.3e-166 589.3 416 71.6
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 3.0e-166 589.0 416 73.1
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 6.7e-166 587.8 416 73.1
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 6.7e-166 587.8 428 71.0
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 1.5e-165 586.6 425 69.9
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 5.7e-165 584.7 415 71.8
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 7.4e-165 584.3 419 72.1
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 9.7e-165 583.9 418 70.3
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.3e-164 583.6 462 67.1
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 1.7e-164 583.2 419 70.4
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 2.2e-164 582.8 416 72.6
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 2.4e-163 579.3 419 71.1
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 5.9e-162 574.7 418 69.4
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 7.7e-162 574.3 419 71.8
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 2.2e-161 572.8 419 69.0
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 8.5e-161 570.9 418 69.1
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 9.4e-160 567.4 428 68.5
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 1.6e-159 566.6 419 71.4
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 1.6e-159 566.6 416 68.3
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 2.1e-159 566.2 420 69.5
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 1.4e-158 563.5 426 68.3
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 1.8e-158 563.1 419 66.6
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 2.3e-158 562.8 419 65.9
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 3.0e-158 562.4 426 68.5
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 1.1e-157 560.5 466 64.4
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 1.5e-157 560.1 419 65.6
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 2.0e-157 559.7 416 70.7
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 2.6e-157 559.3 405 70.6
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 7.4e-157 557.8 419 66.1
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 9.7e-157 557.4 425 65.4
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 2.2e-156 556.2 447 62.6
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 2.8e-156 555.8 419 65.9
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 4.8e-156 555.1 416 70.0
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 6.3e-156 554.7 455 64.4
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 2.0e-154 549.7 447 61.5
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 7.7e-154 547.7 447 61.3
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 5.0e-153 545.0 464 62.5
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.5e-152 543.5 449 65.7
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 4.2e-152 542.0 415 68.4
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 1.2e-151 540.4 420 64.0
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 5.2e-150 535.0 341 79.2
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 9.7e-149 530.8 390 71.3
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 6.3e-148 528.1 453 62.0
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 1.6e-146 523.5 419 63.7
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.3e-145 520.4 442 63.8
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 2.5e-144 516.2 421 61.3
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 4.2e-144 515.4 446 59.6
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 1.6e-143 513.5 411 65.9
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 3.0e-142 509.2 411 65.5
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 3.7e-140 502.3 353 73.1
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 4.8e-140 501.9 411 64.2
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 4.8e-140 501.9 416 61.5
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 1.2e-138 497.3 487 56.7
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 5.0e-137 491.9 419 63.5
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 2.1e-135 486.5 416 62.3
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 2.1e-135 486.5 471 54.4
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 4.7e-135 485.3 339 71.4
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 1.0e-134 484.2 416 63.7
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 7.5e-133 478.0 370 65.4
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 3.1e-131 472.6 309 78.3
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 3.1e-131 472.6 414 59.2
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 4.3e-128 462.2 423 58.2
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 1.2e-117 427.6 330 69.4
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 9.2e-115 417.9 292 71.6
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 6.6e-113 411.8 427 53.9
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 3.3e-112 409.5 419 55.4
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 5.8e-109 398.7 291 68.0
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 4.3e-104 382.5 262 72.9
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 4.3e-96 355.9 240 76.2
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 2.4e-94 350.1 423 46.3
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 3.1e-94 349.7 425 47.8
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 5.8e-93 345.5 420 48.1
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 6.0e-90 335.5 217 81.1
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 3.9e-89 332.8 327 55.4
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 1.3e-87 327.8 242 64.0
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 3.6e-87 326.2 214 80.4
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 5.3e-86 322.4 262 66.4
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 1.3e-81 307.8 317 49.8
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 1.3e-79 301.2 252 57.5
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 5.3e-78 295.8 367 49.0
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 5.7e-72 275.8 373 44.8
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 3.2e-67 260.0 226 60.2
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 3.8e-60 236.5 167 74.3
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.4e-59 234.6 138 82.6
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 8.8e-57 225.3 404 35.9
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 1.2e-53 214.9 139 78.4
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 1.7e-52 211.1 156 69.9
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 5.7e-48 196.1 180 55.6
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 8.2e-47 192.2 133 72.9
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 4.2e-43 179.9 410 32.2
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 3.2e-35 153.7 316 34.5
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 5.5e-35 152.9 99 70.7
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 6.1e-34 149.4 117 69.2
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 1.7e-31 141.4 118 65.3
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 8.3e-31 139.0 159 54.1
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 1.4e-30 138.3 93 76.3
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 1.6e-21 108.2 367 26.7
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 1.0e-20 105.5 214 33.2
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.7e-20 104.8 116 55.2
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.6e-16 90.9 65 69.2
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 5.7e-16 89.7 93 49.5
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.2e-14 84.0 79 55.7
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 9.2e-14 82.4 87 54.0


User provided reference genes

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