Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G004590 Citrullus lanatus HOM05D006653 ORTHO05D008346 5.0e-161 571.2 280 100.0
CsaV3_5G010530 Cucumis sativus L. HOM05D006653 ORTHO05D008346 4.7e-127 458.4 278 82.7
Sed0010106 Sechium edule HOM05D006653 ORTHO05D008346 2.1e-114 416.4 278 76.6
MELO3C034224.2 Cucumis melo HOM05D006653 ORTHO05D008346 1.1e-94 350.9 202 84.7
Actinidia29724 Actinidia chinensis HOM05D006653 ORTHO05D008346 6.2e-87 325.1 262 61.1
CSS0019013 Camellia sinensis var. sinensis HOM05D006653 ORTHO05D008346 7.6e-85 318.2 274 58.4
Cc02_g06010 Coffea canephora HOM05D006653 ORTHO05D008346 5.5e-83 312.0 270 55.6
Cfa001271 Carpinus fangiana HOM05D006653 ORTHO05D008346 9.3e-83 311.2 253 59.3
Glyma.18G024100 Glycine max HOM05D006653 ORTHO05D008346 2.7e-82 309.7 268 56.3
QL08p063830 Quercus lobata HOM05D006653 ORTHO05D008346 3.5e-82 309.3 262 57.6
Hma1.2p1_1013F.1_g247760 Hydrangea macrophylla HOM05D006653 ORTHO05D008346 3.0e-81 306.2 266 57.1
CiPaw.01G301500 Carya illinoinensis HOM05D006653 ORTHO05D008346 5.1e-81 305.4 265 57.4
Prupe.2G256500 Prunus persica HOM05D006653 ORTHO05D008346 6.7e-81 305.1 273 58.6
TWI53G0670 Tripterygium wilfordii HOM05D006653 ORTHO05D008346 5.7e-80 302.0 277 57.0
Oeu001415.1 Olea europaea HOM05D006653 ORTHO05D008346 9.7e-80 301.2 262 56.5
Aqoxy2G00794 Aquilegia oxysepala HOM05D006653 ORTHO05D008346 1.3e-79 300.8 278 53.6
Potri.008G073200 Populus trichocarpa HOM05D006653 ORTHO05D008346 6.3e-79 298.5 276 54.3
Thecc.10G010700 Theobroma cacao HOM05D006653 ORTHO05D008346 1.1e-78 297.7 256 58.6
Ciclev10032369m.g Citrus clementina HOM05D006653 ORTHO05D008346 1.4e-78 297.4 262 55.7
Migut.F00634 Erythranthe guttata HOM05D006653 ORTHO05D008346 2.4e-78 296.6 262 56.5
FAN01G0493 Fragaria x ananassa HOM05D006653 ORTHO05D008346 6.9e-78 295.0 279 55.6
Haze_17274 Corylus avellana HOM05D006653 ORTHO05D008346 9.0e-78 294.7 289 52.9
MD01G1158200 Malus domestica HOM05D006653 ORTHO05D008346 9.0e-78 294.7 275 57.1
FAN06G1821 Fragaria x ananassa HOM05D006653 ORTHO05D008346 1.5e-77 293.9 275 57.1
GSVIVG01032749001 Vitis vinifera HOM05D006653 ORTHO05D008346 1.5e-77 293.9 268 57.1
Haze_17283 Corylus avellana HOM05D006653 ORTHO05D008346 4.5e-77 292.4 289 52.6
Duzib106G1369 Durio zibethinus HOM05D006653 ORTHO05D008346 1.3e-76 290.8 271 54.2
Medtr3g071640 Medicago truncatula HOM05D006653 ORTHO05D008346 2.2e-76 290.0 268 53.7
PSO339G4279 Papaver somniferum HOM05D006653 ORTHO05D008346 3.8e-76 289.3 267 52.8
PSO801G0584 Papaver somniferum HOM05D006653 ORTHO05D008346 3.8e-76 289.3 267 53.2
Nitab4.5_0003391g0090 Nicotiana tabacum HOM05D006653 ORTHO05D008346 5.0e-76 288.9 280 51.8
Ca_15156_v3 Cicer arietinum L. HOM05D006653 ORTHO05D008346 6.5e-76 288.5 248 56.0
Nn2g13243 Nelumbo nucifera HOM05D006653 ORTHO05D008346 8.5e-76 288.1 278 52.2
Lj6g0008682 Lotus japonicus HOM05D006653 ORTHO05D008346 1.4e-75 287.3 267 53.6
vmacro06946 Vaccinium macrocarpon HOM05D006653 ORTHO05D008346 1.4e-75 287.3 286 53.5
Phvul.001G246100 Phaseolus vulgaris HOM05D006653 ORTHO05D008346 2.5e-75 286.6 270 53.7
MD07G1226900 Malus domestica HOM05D006653 ORTHO05D008346 4.2e-75 285.8 275 55.6
SalBow3G2417 Salvia bowleyana HOM05D006653 ORTHO05D008346 9.4e-75 284.6 262 54.6
Lalb_Chr23g0277111 Lupinus albus HOM05D006653 ORTHO05D008346 6.1e-74 282.0 270 52.6
Nitab4.5_0000789g0140 Nicotiana tabacum HOM05D006653 ORTHO05D008346 7.9e-74 281.6 274 51.5
MSTRG.27303 Avicennia marina HOM05D006653 ORTHO05D008346 1.8e-73 280.4 268 52.6
SGA_v2.0_scaffold60G20961 Striga asiatica HOM05D006653 ORTHO05D008346 1.8e-73 280.4 266 54.5
Gorai.011G290500 Gossypium raimondii HOM05D006653 ORTHO05D008346 2.3e-73 280.0 274 51.5
Eucgr.G03091 Eucalyptus grandis HOM05D006653 ORTHO05D008346 5.1e-73 278.9 247 55.9
TAR633G2597 Trochodendron aralioides HOM05D006653 ORTHO05D008346 1.9e-72 276.9 223 60.1
TPR.G27742 Trifolium pratense HOM05D006653 ORTHO05D008346 2.5e-72 276.6 230 57.8
SalBow3G2982 Salvia bowleyana HOM05D006653 ORTHO05D008346 3.3e-72 276.2 284 50.4
Peaxi162Scf01149g00326 Petunia axillaris HOM05D006653 ORTHO05D008346 1.3e-71 274.2 267 51.7
Sabra08G0054400 Salix brachista HOM05D006653 ORTHO05D008346 8.2e-71 271.6 333 46.2
THA.LOC104810122 Tarenaya hassleriana HOM05D006653 ORTHO05D008346 1.1e-70 271.2 271 51.3
CAN.G203.2 Capsicum annuum HOM05D006653 ORTHO05D008346 1.8e-70 270.4 266 49.2
Solyc05g052460.3 Solanum lycopersicum HOM05D006653 ORTHO05D008346 1.8e-70 270.4 253 52.2
Sopen05g030990 Solanum pennellii HOM05D006653 ORTHO05D008346 3.1e-70 269.6 253 52.2
PGR142G3637 Punica granatum HOM05D006653 ORTHO05D008346 4.1e-70 269.2 247 55.9
AL4G38130 Arabidopsis lyrata HOM05D006653 ORTHO05D008346 2.2e-68 263.5 263 52.9
Lsat_1_v5_gn_9_60841 Lactuca sativa HOM05D006653 ORTHO05D008346 2.9e-68 263.1 264 49.6
EL10Ac2g04898 Beta vulgaris HOM05D006653 ORTHO05D008346 3.8e-68 262.7 277 48.0
FAN10G0035 Fragaria x ananassa HOM05D006653 ORTHO05D008346 5.0e-68 262.3 272 52.6
FAN03G1392 Fragaria x ananassa HOM05D006653 ORTHO05D008346 6.5e-68 261.9 279 52.0
RcHm_v2.0_Chr1g0371041 Rosa chinensis HOM05D006653 ORTHO05D008346 8.5e-68 261.5 285 50.5
Lsat_1_v5_gn_8_12960 Lactuca sativa HOM05D006653 ORTHO05D008346 1.1e-67 261.2 262 48.1
Thhalv10017062m.g Eutrema salsugineum HOM05D006653 ORTHO05D008346 1.9e-67 260.4 263 51.3
Aa31LG5G19250 Aethionema arabicum HOM05D006653 ORTHO05D008346 2.5e-67 260.0 264 50.8
Rhsim03G0147300 Rhododendron simsii HOM05D006653 ORTHO05D008346 2.5e-67 260.0 328 45.1
Carub.0004s2256 Capsella rubella HOM05D006653 ORTHO05D008346 3.2e-67 259.6 263 52.1
HanXRQChr17g0560871 Helianthus annuus HOM05D006653 ORTHO05D008346 5.5e-67 258.8 269 48.3
AUR62022948 Chenopodium quinoa HOM05D006653 ORTHO05D008346 9.4e-67 258.1 236 53.0
Duzib114G1011 Durio zibethinus HOM05D006653 ORTHO05D008346 9.4e-67 258.1 256 52.3
Dinv21781 Davidia involucrata HOM05D006653 ORTHO05D008346 3.6e-66 256.1 223 58.3
ECA233G2660 Erigeron canadensis HOM05D006653 ORTHO05D008346 7.4e-64 248.4 254 48.4
Sp4g22650 Schrenkiella parvula HOM05D006653 ORTHO05D008346 9.7e-64 248.1 264 48.9
BcaC02g12146 Brassica carinata HOM05D006653 ORTHO05D008346 1.3e-63 247.7 264 49.2
Ah.10g036190 Amaranthus hybridus HOM05D006653 ORTHO05D008346 1.7e-63 247.3 252 46.8
C04p07070 Brassica napus HOM05D006653 ORTHO05D008346 1.7e-63 247.3 265 49.1
HanXRQChr09g0253161 Helianthus annuus HOM05D006653 ORTHO05D008346 4.8e-63 245.7 214 53.3
Sc10g0002660 Simmondsia chinensis HOM05D006653 ORTHO05D008346 6.3e-63 245.4 270 47.8
FvH4_7g25140 Fragaria vesca HOM05D006653 ORTHO05D008346 1.4e-62 244.2 198 62.1
A05p06130 Brassica napus HOM05D006653 ORTHO05D008346 1.8e-62 243.8 258 48.8
Hund13903 Selenicereus undatus HOM05D006653 ORTHO05D008346 3.1e-62 243.0 209 54.5
ECA232G4592 Erigeron canadensis HOM05D006653 ORTHO05D008346 7.0e-62 241.9 285 44.2
arahy.Tifrunner.gnm1.ann1.CC0JZ8 Arachis hypogaea HOM05D006653 ORTHO05D008346 1.2e-61 241.1 229 50.7
BcaB02g09031 Brassica carinata HOM05D006653 ORTHO05D008346 2.6e-61 240.0 265 48.7
Psat5g130600 Pisum sativum HOM05D006653 ORTHO05D008346 1.3e-60 237.7 197 58.9
BolC4t22332H Brassica oleracea HOM05D006653 ORTHO05D008346 2.2e-60 236.9 227 52.4
CANSAT56G3810 Cannabis sativa HOM05D006653 ORTHO05D008346 3.8e-60 236.1 202 59.9
PGSC0003DMG400027171 Solanum tuberosum HOM05D006653 ORTHO05D008346 5.5e-59 232.3 260 45.4
Glyma.11G233000 Glycine max HOM05D006653 ORTHO05D008346 9.4e-59 231.5 208 53.8
HPP92_000719 Vanilla planifolia HOM05D006653 ORTHO05D008346 1.6e-58 230.7 240 48.8
BraA05t19578Z Brassica rapa HOM05D006653 ORTHO05D008346 2.7e-58 229.9 236 49.2
Manes.10G008100 Manihot esculenta HOM05D006653 ORTHO05D008346 1.4e-57 227.6 202 56.9
ATR0174G059 Amborella trichopoda HOM05D006653 ORTHO05D008346 1.3e-55 221.1 231 48.1
Gohir.D10G250100 Gossypium hirsutum HOM05D006653 ORTHO05D008346 6.3e-55 218.8 201 52.2
Gohir.A10G238200 Gossypium hirsutum HOM05D006653 ORTHO05D008346 1.1e-54 218.0 201 52.2
CARHR135400 Cardamine hirsuta HOM05D006653 ORTHO05D008346 7.0e-54 215.3 201 53.2
Atru.chr12.104 Acer truncatum HOM05D006653 ORTHO05D008346 2.6e-53 213.4 188 59.6
DCAR_011848 Daucus carota HOM05D006653 ORTHO05D008346 3.5e-53 213.0 198 54.0
AT2G40316 Arabidopsis thaliana HOM05D006653 ORTHO05D008346 3.8e-52 209.5 201 52.2
arahy.Tifrunner.gnm1.ann1.WF4WBF Arachis hypogaea HOM05D006653 ORTHO05D008346 3.8e-52 209.5 279 43.4
Lj8C62G17 Lonicera japonica HOM05D006653 ORTHO05D008346 6.7e-49 198.7 184 57.6
VMungo1383G0363 Vigna mungo HOM05D006653 ORTHO05D008346 2.6e-48 196.8 337 38.3
Zm00001eb013720 Zea mays HOM05D006653 ORTHO05D008346 1.7e-47 194.1 187 51.9
Pp3c11_970 Physcomitrium patens HOM05D006653 ORTHO05D008346 8.2e-47 191.8 220 44.1
PGR142G1681 Punica granatum HOM05D006653 ORTHO05D008346 1.1e-46 191.4 155 61.9
AUR62012309 Chenopodium quinoa HOM05D000043 ORTHO05D003538 1.4e-46 191.0 225 44.9
Pp3c2_28750 Physcomitrium patens HOM05D006653 ORTHO05D008346 5.5e-43 179.1 224 40.2
CDE06G2038 Ceratophyllum demersum HOM05D006653 ORTHO05D008346 2.7e-42 176.8 187 48.1
MBI03_g37948_MAGBIO Magnolia biondii HOM05D006653 ORTHO05D008346 1.2e-37 161.4 328 32.6
Mapoly0095s0003 Marchantia polymorpha HOM05D006653 ORTHO05D008346 2.0e-37 160.6 240 35.4
Dinv10585 Davidia involucrata HOM05D006653 ORTHO05D008346 4.5e-37 159.5 127 60.6
COL.COLO4_25792 Corchorus olitorius HOM05D006653 ORTHO05D008346 6.6e-36 155.6 166 48.8
HanXRQChr08g0221951 Helianthus annuus HOM05D006653 ORTHO05D008346 1.1e-30 138.3 166 44.0
AagrBONN_evm.TU.Sc2ySwM_362.1315 Anthoceros agrestis HOM05D006653 ORTHO05D008346 4.1e-30 136.3 186 36.0
Cpa.g.sc19.127 Carica papaya HOM05D006653 ORTHO05D008346 1.6e-29 134.4 113 56.6
Manes.07G134901 Manihot esculenta HOM05D006653 ORTHO05D008346 1.1e-22 111.7 146 44.5
SMO203G0248 Selaginella moellendorffii HOM05D006653 ORTHO05D008346 3.0e-20 103.6 166 36.7
Manes.07G074522 Manihot esculenta HOM05D006653 ORTHO05D008346 2.1e-18 97.4 93 55.9
SHI28813 Sapria himalayana HOM05D006653 ORTHO05D008346 1.2e-13 81.6 205 32.7
SEGI_38425 Sequoiadendron giganteum HOM05D006653 ORTHO05D008346 1.7e-07 61.2 71 39.4
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 3.2e-06 57.0 40 62.5
Manes.04G030750 Manihot esculenta HOM05D006653 ORTHO05D008346 3.2e-06 57.0 48 52.1
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 7.1e-06 55.8 83 37.3


User provided reference genes

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