Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 0.0e+00 1417.1 679 100.0
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 0.0e+00 1269.6 681 88.7
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 0.0e+00 1162.5 684 81.4
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 0.0e+00 1159.8 679 82.8
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 0.0e+00 1076.2 681 75.2
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.7e-301 1038.9 685 71.8
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.5e-263 912.1 691 64.7
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.7e-248 862.8 693 60.6
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 3.1e-242 842.0 685 59.7
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 4.1e-242 841.6 677 59.8
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 3.2e-239 832.0 685 59.3
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.2e-238 830.1 676 59.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.6e-238 829.7 694 58.2
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 6.1e-238 827.8 678 59.9
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.0e-237 827.0 697 58.2
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 3.0e-237 825.5 685 59.1
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 7.5e-236 820.8 678 59.7
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 2.8e-235 818.9 709 58.0
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.8e-235 818.9 694 58.1
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 6.3e-235 817.8 691 58.2
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 1.2e-233 813.5 681 58.3
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 2.7e-233 812.4 678 58.7
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 4.5e-233 811.6 670 59.1
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 5.9e-233 811.2 675 59.1
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 7.7e-233 810.8 698 57.0
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.7e-232 809.7 693 58.4
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 6.6e-232 807.7 670 59.1
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 8.6e-232 807.4 669 59.0
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 1.9e-231 806.2 685 56.8
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 8.0e-230 800.8 683 57.4
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.0e-229 800.4 687 57.1
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.8e-229 799.7 696 57.2
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.8e-229 799.7 685 57.5
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.8e-229 799.7 691 57.5
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.0e-229 798.5 685 58.0
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 6.8e-229 797.7 687 57.1
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 8.9e-229 797.3 661 58.2
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 2.6e-228 795.8 688 57.8
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.6e-228 795.8 692 56.9
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.4e-228 795.0 684 58.0
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.3e-227 793.5 674 58.3
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.7e-227 793.1 685 57.5
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 2.2e-227 792.7 726 55.1
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.8e-227 792.3 697 56.5
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 4.9e-227 791.6 697 56.7
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.1e-226 790.4 675 57.8
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.1e-226 788.5 710 56.2
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 4.1e-226 788.5 675 57.0
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 7.0e-226 787.7 701 57.3
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 9.2e-226 787.3 726 53.4
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 2.7e-225 785.8 681 57.4
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 4.5e-225 785.0 701 57.3
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 7.8e-225 784.3 680 56.8
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.3e-224 783.5 675 57.5
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 2.3e-224 782.7 680 57.6
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.3e-224 782.7 681 56.1
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.0e-224 781.6 710 55.9
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.5e-223 780.0 698 55.9
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.2e-222 776.9 698 55.4
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.2e-222 776.9 695 56.3
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 2.8e-222 775.8 683 56.1
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 3.7e-219 765.4 697 54.1
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 3.7e-219 765.4 731 52.4
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.4e-218 763.5 687 55.0
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 4.1e-218 761.9 687 56.5
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.5e-217 758.8 699 54.8
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.0e-216 757.3 684 55.8
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 5.0e-216 755.0 680 56.0
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.6e-214 750.0 692 53.9
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.2e-212 743.8 690 53.2
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.5e-212 743.4 689 55.2
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.5e-212 743.4 686 53.9
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 5.8e-212 741.5 691 53.7
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 7.5e-212 741.1 680 53.5
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 8.3e-211 737.6 700 52.9
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 4.6e-209 731.9 623 58.1
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 7.8e-209 731.1 698 52.6
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.0e-208 730.7 714 51.5
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.1e-207 727.2 685 52.4
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.6e-206 723.4 694 51.3
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 3.6e-206 722.2 851 46.8
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 8.1e-206 721.1 681 52.7
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 8.9e-205 717.6 681 52.3
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 1.9e-202 709.9 684 52.6
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 5.4e-202 708.4 692 51.4
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 7.1e-202 708.0 622 56.1
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 9.2e-202 707.6 633 55.8
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 7.8e-201 704.5 688 51.5
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.5e-199 699.5 677 52.3
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 4.3e-199 698.7 681 51.5
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 5.6e-199 698.4 678 51.5
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 2.4e-197 693.0 679 51.3
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 6.8e-197 691.4 676 51.3
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 2.0e-196 689.9 678 50.9
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 5.8e-196 688.3 729 49.9
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.9e-195 686.0 682 51.2
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.4e-194 683.7 676 51.8
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.4e-194 682.9 679 50.4
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.7e-193 679.5 739 50.1
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 3.5e-193 679.1 593 57.5
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 6.0e-193 678.3 679 50.1
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 6.0e-193 678.3 679 50.1
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 8.7e-192 674.5 697 51.2
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.5e-191 672.9 687 49.9
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 8.1e-190 667.9 684 49.3
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.1e-189 667.5 696 49.9
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.4e-189 667.2 676 50.9
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 4.0e-189 665.6 677 50.8
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 5.3e-189 665.2 683 49.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 9.0e-189 664.5 697 48.9
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.2e-188 664.1 682 49.7
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.2e-188 664.1 686 50.0
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 1.4e-186 657.1 595 55.3
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 2.4e-186 656.4 731 46.2
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 3.2e-186 656.0 677 51.4
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.4e-186 655.2 664 52.7
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 2.1e-185 653.3 687 49.3
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 2.7e-185 652.9 683 49.5
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 6.0e-185 651.7 698 48.4
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.3e-184 650.6 687 49.6
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.0e-184 649.4 683 48.3
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 6.6e-184 648.3 677 47.6
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 7.1e-178 628.2 681 48.5
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 3.0e-168 596.3 679 46.5
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.1e-167 594.3 536 54.7
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.5e-167 594.0 688 46.5
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.0e-160 571.2 556 52.9
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.8e-160 570.5 683 44.2
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 2.6e-156 556.6 676 45.3
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 7.4e-151 538.5 675 45.6
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 4.1e-149 532.7 538 50.0
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.3e-134 484.6 550 46.2
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-117 427.6 323 61.6
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.6e-116 424.5 383 53.8
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.5e-111 407.9 425 46.6
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 4.4e-103 379.8 404 49.8
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 3.3e-98 363.6 295 59.0
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 8.3e-94 349.0 402 43.8
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.2e-89 335.1 210 72.9
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 2.8e-89 334.0 411 43.1
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 3.2e-85 320.5 468 38.7
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 9.9e-79 298.9 311 45.7
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 7.1e-77 292.7 571 33.5
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 4.8e-73 280.0 550 33.3
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 3.8e-70 270.4 580 32.4
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 3.9e-59 233.8 335 42.1
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 6.7e-59 233.0 156 69.2
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 7.4e-58 229.6 198 57.6
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.4e-55 220.7 206 52.9
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 3.8e-54 217.2 155 68.4
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 2.5e-50 204.5 137 68.6
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 6.9e-48 196.4 254 45.3
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.2e-46 191.4 207 48.3
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 1.5e-42 178.7 126 62.7
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 7.7e-39 166.4 218 42.7
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 3.9e-35 154.1 185 45.4
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 5.9e-31 140.2 99 67.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 5.9e-31 140.2 99 67.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 5.9e-31 140.2 99 67.7
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 3.8e-30 137.5 222 40.5
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 5.0e-30 137.1 390 29.2
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 2.4e-24 118.2 136 39.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 2.2e-22 111.7 282 30.1
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 7.2e-21 106.7 261 29.1
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 3.6e-20 104.4 256 28.9
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 1.0e-19 102.8 148 39.2
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 8.8e-19 99.8 237 31.2
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-15 89.4 77 54.5
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 3.5e-15 87.8 60 63.3
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.3e-11 75.1 48 62.5
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.3e-11 75.1 48 62.5


User provided reference genes

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