Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 0.0e+00 1428.3 692 100.0
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 0.0e+00 1178.3 691 81.5
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 0.0e+00 1077.4 681 75.2
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 4.3e-311 1070.8 681 74.6
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.4e-309 1065.8 681 73.9
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.8e-294 1015.0 701 71.9
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.7e-283 978.0 681 69.3
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 2.2e-235 819.3 680 59.1
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 4.2e-234 815.1 697 58.1
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 7.9e-233 810.8 687 59.1
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 1.0e-232 810.4 691 59.0
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.1e-230 802.7 684 58.8
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 4.1e-229 798.5 689 56.9
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.2e-228 797.0 693 56.7
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 2.6e-228 795.8 694 56.9
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 5.9e-228 794.7 701 56.8
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.9e-227 792.3 694 56.8
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.9e-227 792.3 692 57.7
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 2.1e-225 786.2 688 58.4
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 3.5e-225 785.4 684 58.0
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 6.1e-225 784.6 678 57.8
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.3e-224 783.5 690 57.4
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 2.3e-224 782.7 688 56.8
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.3e-224 782.7 674 57.7
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 6.7e-224 781.2 708 56.5
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.5e-223 780.0 674 57.3
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.5e-223 779.2 704 56.8
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.7e-223 778.1 715 56.1
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 5.7e-223 778.1 712 55.9
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.4e-223 777.7 674 57.4
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.3e-222 776.9 686 57.0
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 2.8e-222 775.8 688 54.9
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.8e-221 773.1 671 56.8
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 3.1e-221 772.3 651 57.6
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.5e-220 770.0 679 56.0
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 2.6e-220 769.2 688 56.2
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 4.5e-220 768.5 716 54.9
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 4.5e-220 768.5 709 56.4
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 5.9e-220 768.1 710 56.2
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.7e-219 766.5 687 55.7
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 5.0e-219 765.0 709 56.1
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.6e-217 760.0 702 54.0
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.1e-217 759.6 730 54.4
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 2.1e-217 759.6 672 56.4
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 2.1e-217 759.6 667 56.7
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 2.1e-217 759.6 680 55.1
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 2.1e-217 759.6 689 54.3
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 6.1e-217 758.1 690 54.5
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.0e-216 757.3 693 55.3
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 3.0e-216 755.7 682 55.7
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 3.9e-216 755.4 681 55.4
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 3.9e-216 755.4 670 55.4
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 5.1e-216 755.0 680 56.0
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 8.8e-216 754.2 700 53.3
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 6.3e-214 748.0 685 53.1
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 6.3e-214 748.0 741 53.0
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.4e-213 746.9 690 55.5
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.1e-213 745.7 685 55.8
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 5.3e-213 745.0 674 54.2
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 6.9e-213 744.6 688 53.9
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.5e-212 743.4 721 51.5
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 7.7e-212 741.1 681 56.1
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 2.2e-211 739.6 671 54.5
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 5.0e-211 738.4 680 55.9
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.9e-210 736.5 686 55.0
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.6e-209 733.4 676 55.5
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 2.7e-209 732.6 682 53.4
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.1e-207 727.2 686 53.9
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 6.3e-206 721.5 690 54.3
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.8e-205 719.9 679 53.8
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 7.0e-205 718.0 680 52.9
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.2e-204 717.2 692 52.5
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 4.5e-204 715.3 696 52.2
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 4.5e-204 715.3 614 58.5
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.3e-203 713.8 697 52.2
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 2.2e-203 713.0 684 53.7
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.5e-202 709.5 689 53.0
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 4.2e-202 708.8 697 52.4
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 2.1e-201 706.4 699 51.4
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 8.8e-200 701.0 693 50.6
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 2.6e-199 699.5 715 52.2
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 2.2e-198 696.4 696 50.1
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 3.1e-197 692.6 683 51.5
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.2e-195 686.4 628 55.7
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.5e-194 683.7 675 51.1
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 1.9e-194 683.3 851 45.1
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 4.2e-194 682.2 611 55.2
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.0e-192 677.6 680 50.4
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 2.3e-192 676.4 689 51.2
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 3.0e-192 676.0 673 50.5
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 4.0e-192 675.6 676 50.3
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 5.2e-192 675.2 686 50.3
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 2.0e-191 673.3 680 50.1
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.6e-191 672.9 676 50.4
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 2.2e-190 669.8 677 49.6
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.8e-190 669.5 680 49.6
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 4.1e-189 665.6 692 50.0
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.0e-189 664.8 684 51.5
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 9.1e-189 664.5 680 49.4
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 9.1e-189 664.5 680 49.4
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.2e-188 664.1 673 49.8
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 2.0e-188 663.3 674 51.2
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 9.4e-186 654.4 674 49.7
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 6.1e-185 651.7 700 47.7
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.0e-184 651.0 680 48.4
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.4e-184 650.6 675 48.9
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.5e-183 647.1 675 48.7
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.0e-183 646.7 723 48.4
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 4.4e-183 645.6 670 48.4
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 9.8e-183 644.4 742 45.6
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.7e-182 643.7 740 46.9
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 3.7e-182 642.5 684 49.6
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 8.3e-182 641.3 689 48.6
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 3.1e-181 639.4 589 55.3
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 9.2e-181 637.9 675 47.4
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 3.5e-180 636.0 590 54.7
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.3e-179 634.0 681 49.3
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.8e-179 632.5 669 48.3
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.2e-177 627.5 658 51.2
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.6e-177 627.1 674 47.8
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 3.0e-176 622.9 684 49.0
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 7.5e-175 618.2 686 48.8
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 2.4e-173 613.2 649 48.4
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.2e-164 584.3 698 45.1
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-162 577.8 565 51.2
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 4.3e-162 575.9 533 55.3
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 8.9e-160 568.2 670 44.6
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 4.6e-156 555.8 670 46.3
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.1e-148 530.4 553 50.1
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.5e-146 524.2 691 43.7
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 3.9e-139 499.6 531 49.0
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 4.9e-134 482.6 547 46.4
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-120 437.2 305 66.6
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 4.2e-117 426.4 432 48.4
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 4.5e-111 406.4 379 52.0
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 1.1e-96 358.6 413 43.3
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 5.0e-94 349.7 289 56.1
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 5.3e-88 329.7 210 72.4
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 5.3e-88 329.7 391 46.8
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 6.1e-84 316.2 402 43.3
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 2.3e-83 314.3 459 38.6
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.6e-79 301.6 311 46.6
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 6.8e-75 286.2 568 32.4
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 8.8e-75 285.8 571 34.2
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.9e-70 270.8 199 67.3
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.2e-66 258.8 548 32.3
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.1e-60 238.0 211 57.8
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 3.6e-60 237.3 156 70.5
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.4e-56 225.3 336 42.9
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 2.6e-50 204.5 148 64.2
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 6.4e-49 199.9 192 54.2
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 9.5e-45 186.0 119 67.2
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.1e-44 184.9 212 47.2
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 4.6e-39 167.2 245 38.8
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 2.1e-36 158.3 229 40.2
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 7.1e-32 143.3 178 43.3
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.6e-31 140.6 390 27.9
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-29 135.2 99 64.6
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-29 135.2 99 64.6
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-29 135.2 99 64.6
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 2.5e-29 134.8 191 41.4
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 4.3e-21 107.5 136 36.0
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 3.1e-19 101.3 277 29.6
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 6.9e-19 100.1 247 28.7
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 4.5e-18 97.4 249 27.3
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.1e-16 92.8 72 59.7
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 9.3e-16 89.7 60 68.3
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.6e-15 89.0 237 30.0
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 8.1e-12 76.6 48 68.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 8.1e-12 76.6 48 68.8


User provided reference genes

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