Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 1.4e-148 530.0 355 100.0
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 1.5e-126 456.8 299 80.9
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 1.7e-114 416.8 357 71.4
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 2.1e-96 356.7 298 65.8
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 6.1e-96 355.1 298 65.1
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.1e-96 355.1 298 65.1
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.0e-95 354.4 298 65.4
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.8e-95 353.6 298 65.1
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 8.8e-95 351.3 298 64.8
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 2.6e-94 349.7 301 65.1
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 4.1e-92 342.4 312 61.2
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 1.2e-91 340.9 303 63.7
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.0e-91 340.1 357 61.3
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 7.7e-91 338.2 303 63.4
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 1.0e-87 327.8 304 67.4
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.9e-87 325.9 295 61.0
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 6.7e-87 325.1 300 61.0
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 8.8e-87 324.7 313 59.4
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 4.4e-86 322.4 297 61.6
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 5.7e-86 322.0 369 59.3
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 2.8e-85 319.7 300 60.7
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 3.7e-85 319.3 303 60.4
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 3.7e-85 319.3 303 60.4
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 2.4e-84 316.6 302 62.9
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 2.6e-83 313.2 302 59.3
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 4.5e-83 312.4 302 59.6
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.0e-82 311.2 287 61.3
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.7e-82 310.5 296 59.8
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 2.9e-82 309.7 301 60.8
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 8.5e-82 308.1 299 58.5
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 5.5e-81 305.4 306 58.5
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 7.2e-81 305.1 302 56.6
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 9.4e-81 304.7 299 58.2
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 9.4e-81 304.7 300 58.3
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 1.4e-79 300.8 299 57.2
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 3.0e-79 299.7 305 57.4
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 1.5e-78 297.4 300 56.3
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 1.7e-77 293.9 310 56.5
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 3.7e-77 292.7 301 56.1
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.8e-76 290.4 298 57.4
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 2.9e-74 283.1 300 56.0
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 3.8e-74 282.7 302 55.0
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 2.5e-73 280.0 302 56.0
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.0e-71 274.6 299 56.2
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.4e-71 274.2 303 60.4
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 1.2e-70 271.2 298 56.7
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 1.5e-70 270.8 304 56.9
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.4e-70 269.2 302 56.3
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.6e-67 260.8 299 54.5
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.6e-67 260.8 310 52.9
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.3e-66 257.7 299 53.8
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 5.0e-66 255.8 298 57.0
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 5.0e-66 255.8 305 56.1
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.6e-64 250.8 308 55.2
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 3.6e-64 249.6 300 53.7
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 6.1e-64 248.8 300 53.3
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 8.0e-64 248.4 341 48.7
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 8.0e-64 248.4 341 48.7
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.0e-63 246.5 260 57.7
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 4.0e-63 246.1 307 50.5
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 5.2e-63 245.7 342 49.4
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 3.4e-62 243.0 307 49.8
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 4.4e-62 242.7 306 49.3
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 4.4e-62 242.7 301 49.8
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 5.7e-62 242.3 304 50.0
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.7e-62 242.3 307 48.9
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 7.5e-62 241.9 304 49.7
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.5e-62 241.9 305 48.9
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.7e-61 240.7 303 49.5
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.7e-61 240.7 296 50.3
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 2.2e-61 240.4 304 49.7
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.8e-61 240.0 302 51.7
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 3.7e-61 239.6 300 51.7
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 3.7e-61 239.6 305 55.7
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 6.3e-61 238.8 302 50.3
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.8e-60 237.3 303 51.5
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 1.8e-60 237.3 309 49.5
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 3.2e-60 236.5 311 49.2
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 5.4e-60 235.7 299 50.8
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 7.0e-60 235.3 318 48.7
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.2e-59 234.6 292 49.3
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.0e-59 233.8 300 48.3
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 2.0e-59 233.8 305 49.2
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.5e-59 233.0 307 48.5
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 4.5e-59 232.6 281 55.5
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 5.9e-59 232.3 303 49.8
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 5.9e-59 232.3 310 49.4
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 7.8e-59 231.9 302 49.0
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.3e-58 230.3 310 51.0
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 6.6e-58 228.8 303 49.2
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 7.3e-57 225.3 320 48.8
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 7.3e-57 225.3 300 46.7
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 4.7e-56 222.6 313 50.2
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 4.7e-56 222.6 303 47.9
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.4e-55 221.1 303 48.5
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 3.1e-55 219.9 309 47.6
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 8.9e-55 218.4 306 47.4
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 4.4e-54 216.1 183 78.7
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 4.4e-54 216.1 277 49.1
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 5.8e-54 215.7 255 51.8
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.7e-53 214.2 295 48.1
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 3.7e-53 213.0 305 46.6
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 3.7e-53 213.0 308 47.1
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 6.4e-53 212.2 306 47.7
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.1e-52 211.5 310 47.7
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.4e-52 211.1 300 47.0
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 1.4e-52 211.1 319 44.5
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 2.4e-52 210.3 319 46.7
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 5.4e-52 209.1 304 46.7
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.2e-51 208.0 292 48.3
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 1.6e-51 207.6 301 46.8
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 4.6e-51 206.1 303 44.6
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 6.0e-51 205.7 306 47.4
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 6.0e-51 205.7 297 47.5
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 7.8e-51 205.3 264 50.4
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 3.9e-50 203.0 291 45.4
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 8.6e-50 201.8 317 45.4
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.1e-49 201.4 324 42.9
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.5e-49 201.1 270 51.9
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 3.3e-49 199.9 298 43.6
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 9.5e-49 198.4 277 50.5
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.2e-48 198.0 349 39.3
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 3.6e-48 196.4 314 44.9
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 7.5e-46 188.7 182 57.7
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 8.3e-45 185.3 317 42.3
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 1.7e-42 177.6 307 40.4
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.5e-41 174.5 264 42.4
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.9e-41 174.1 221 47.1
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 1.2e-40 171.4 110 76.4
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 1.2e-40 171.4 109 76.1
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.6e-40 171.0 307 40.4
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 8.1e-40 168.7 302 40.1
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.8e-39 167.5 311 40.8
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.5e-38 164.5 232 42.7
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.2e-37 160.6 111 72.1
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.2e-37 160.6 232 42.2
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 6.4e-37 159.1 304 42.1
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 3.5e-35 153.3 299 37.5
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 6.0e-35 152.5 189 48.1
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 4.3e-33 146.4 293 36.2
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.6e-32 144.4 179 49.7
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 1.6e-32 144.4 77 88.3
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.4e-31 141.4 109 68.8
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 2.2e-29 134.0 103 67.0
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 3.8e-29 133.3 116 58.6
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 3.2e-28 130.2 102 61.8
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 3.2e-28 130.2 102 62.7
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 4.6e-27 126.3 96 61.5
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 3.9e-26 123.2 106 58.5
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 3.9e-26 123.2 103 57.3
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 3.9e-26 123.2 103 57.3
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.1e-25 121.7 254 39.0
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 2.9e-21 107.1 102 50.0
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 1.9e-20 104.4 170 53.5
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.3e-16 91.7 135 48.9
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 2.6e-14 84.0 167 40.7
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 1.7e-13 81.3 192 35.4
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 1.1e-12 78.6 152 40.8
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.9e-12 77.8 48 72.9
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.4e-12 77.4 56 64.3
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 5.5e-12 76.3 94 57.4
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 8.1e-08 62.4 116 39.7
Medtr7g114200 Medicago truncatula HOM05D063531 ORTHO05D005140 6.9e-07 59.3 40 65.0
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 6.9e-07 59.3 97 41.2


User provided reference genes

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